Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.48289 * 2 1 4 4 C 1.53095 * 109.48123 * 120.02847 * 2 1 3 5 5 C 1.53175 * 109.21905 * 62.33846 * 4 2 1 6 6 H 1.09000 * 109.54149 * 297.14959 * 5 4 2 7 7 N 1.46494 * 109.54702 * 176.88125 * 5 4 2 8 8 C 1.36945 * 119.99592 * 300.00035 * 7 5 4 9 9 H 1.07993 * 120.00429 * 325.82474 * 8 7 5 10 10 C 1.38819 * 119.99423 * 145.82627 * 8 7 5 11 11 N 1.31618 * 120.00388 * 336.98755 * 10 8 7 12 12 Si 1.86801 * 119.99503 * 156.99763 * 10 8 7 13 13 H 1.48502 * 109.47263 * 89.99796 * 12 10 8 14 14 H 1.48505 * 109.46838 * 209.99417 * 12 10 8 15 15 H 1.48494 * 109.47113 * 329.99525 * 12 10 8 16 16 C 1.46493 * 120.00290 * 119.99938 * 7 5 4 17 17 C 1.50693 * 109.47297 * 85.23720 * 16 7 5 18 18 C 1.38237 * 119.99967 * 265.87223 * 17 16 7 19 19 C 1.38237 * 120.00089 * 179.78636 * 18 17 16 20 20 C 1.38238 * 119.99645 * 0.43992 * 19 18 17 21 21 C 1.38228 * 120.00060 * 359.81097 * 20 19 18 22 22 C 1.38228 * 120.00271 * 359.97438 * 21 20 19 23 23 C 1.53315 * 108.96237 * 56.95075 * 5 4 2 24 24 C 1.53087 * 109.19736 * 303.05922 * 23 5 4 25 25 O 1.42899 * 109.41669 * 57.61383 * 24 23 5 26 26 H 1.09003 * 109.46785 * 299.97767 * 1 2 3 27 27 H 1.08999 * 109.47152 * 59.97453 * 1 2 3 28 28 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47321 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46956 * 300.02653 * 3 2 1 31 31 H 1.09002 * 109.47066 * 60.02623 * 3 2 1 32 32 H 1.08998 * 109.52004 * 182.27768 * 4 2 1 33 33 H 1.09001 * 109.52285 * 302.40000 * 4 2 1 34 34 H 0.96995 * 120.00153 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47360 * 205.23751 * 16 7 5 36 36 H 1.09002 * 109.47188 * 325.23289 * 16 7 5 37 37 H 1.08000 * 120.00023 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.99937 * 180.26916 * 19 18 17 39 39 H 1.08000 * 119.99477 * 179.83208 * 20 19 18 40 40 H 1.08000 * 119.99860 * 179.97438 * 21 20 19 41 41 H 1.08007 * 120.00435 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.50174 * 183.14000 * 23 5 4 43 43 H 1.08998 * 109.55566 * 63.01150 * 23 5 4 44 44 H 1.09002 * 109.48314 * 297.61995 * 24 23 5 45 45 H 1.09008 * 109.47587 * 177.58985 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7223 1.2496 5 6 1.5757 -2.1813 1.2139 6 1 0.4867 -2.2178 1.2426 7 7 2.1223 -2.8983 2.3686 8 6 3.4781 -2.9882 2.5395 9 1 4.1272 -3.0609 1.6795 10 6 4.0180 -2.9860 3.8184 11 7 3.3415 -2.4602 4.8175 12 14 5.7049 -3.7292 4.1212 13 1 6.7448 -2.6832 3.9490 14 1 5.7679 -4.2668 5.5041 15 1 5.9429 -4.8283 3.1514 16 6 1.2188 -3.5190 3.3404 17 6 0.8313 -4.8935 2.8594 18 6 -0.3326 -5.0696 2.1346 19 6 -0.6858 -6.3298 1.6896 20 6 0.1202 -7.4154 1.9773 21 6 1.2813 -7.2401 2.7065 22 6 1.6368 -5.9793 3.1476 23 6 2.0763 -2.8322 -0.0808 24 6 1.5644 -2.0285 -1.2789 25 8 2.0065 -0.6743 -1.1664 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9561 0.8902 32 1 3.1298 -0.6874 1.2709 33 1 1.6431 -0.2350 2.1399 34 1 3.7189 -2.4584 5.7110 35 1 1.7216 -3.5996 4.3042 36 1 0.3239 -2.9059 3.4476 37 1 -0.9644 -4.2220 1.9134 38 1 -1.5929 -6.4666 1.1196 39 1 -0.1572 -8.4004 1.6319 40 1 1.9108 -8.0884 2.9315 41 1 2.5439 -5.8424 3.7178 42 1 1.7035 -3.8547 -0.1418 43 1 3.1663 -2.8410 -0.0869 44 1 0.4748 -2.0551 -1.2957 45 1 1.9530 -2.4624 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255546247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = -22.235116 kcal Electronic energy + Delta-G solvation = -24480.069799 eV Core-core repulsion = 21269.094225 eV Total energy + Delta-G solvation = -3210.975575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94603 -39.90530 -37.40368 -34.45018 -34.07624 -33.09152 -31.60743 -30.99867 -28.68472 -28.17580 -27.35913 -25.49888 -23.95185 -23.25391 -22.17838 -21.65363 -20.14153 -18.39821 -17.47500 -17.04996 -16.99390 -16.40858 -16.09375 -15.89238 -15.78063 -15.40875 -15.07655 -14.84015 -14.39662 -14.12528 -13.94468 -13.74075 -13.45767 -13.28435 -13.00630 -12.92525 -12.81366 -12.75910 -12.62491 -12.46853 -12.37714 -12.23106 -11.91836 -11.78582 -11.73968 -11.54824 -11.52432 -10.77370 -10.48897 -10.31115 -9.66627 -9.42404 -8.57496 -7.84846 -5.36892 0.64708 0.67208 1.38779 1.43183 1.50905 2.48358 2.91557 3.02622 3.25481 3.67123 3.96378 4.02511 4.08502 4.13944 4.23297 4.25526 4.33159 4.39084 4.43514 4.56097 4.58651 4.61427 4.67765 4.76097 4.83278 4.84155 4.88316 4.93318 4.97383 5.05321 5.15134 5.20184 5.28157 5.31501 5.32708 5.43146 5.50700 5.60786 5.63361 5.71839 5.73249 5.79210 6.05622 6.30704 6.44918 6.48477 7.16836 7.87556 8.38103 9.13266 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.007550 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.050385 B = 3707.851357 C = 5320.748039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 C -0.132 4.132 4 C -0.130 4.130 5 C 0.177 3.823 6 H 0.062 0.938 7 N -0.580 5.580 8 C -0.240 4.240 9 H 0.047 0.953 10 C -0.030 4.030 11 N -0.911 5.911 12 Si 0.936 3.064 13 H -0.287 1.287 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.179 3.821 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.151 4.151 24 C 0.067 3.933 25 O -0.392 6.392 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.067 0.933 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 -1.825 -9.157 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.070 3.930 3 C -0.190 4.190 4 C -0.169 4.169 5 C 0.071 3.929 6 H 0.080 0.920 7 N -0.298 5.298 8 C -0.371 4.371 9 H 0.064 0.936 10 C -0.227 4.227 11 N -0.556 5.556 12 Si 0.765 3.235 13 H -0.214 1.214 14 H -0.216 1.216 15 H -0.202 1.202 16 C 0.054 3.946 17 C -0.094 4.094 18 C -0.148 4.148 19 C -0.138 4.138 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.191 4.191 24 C -0.010 4.010 25 O -0.312 6.312 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.211 -1.682 -9.096 13.054 hybrid contribution 1.421 -0.464 1.042 1.823 sum -7.790 -2.146 -8.054 11.409 Atomic orbital electron populations 1.22364 0.94274 1.02777 1.03263 1.21626 0.94170 0.92892 0.84343 1.21732 1.01149 0.92993 1.03082 1.22405 1.00221 0.97446 0.96873 1.20544 0.95575 0.89811 0.87015 0.91982 1.43948 1.01761 1.58552 1.25538 1.18918 0.83595 1.43551 0.91024 0.93576 1.25494 0.99767 1.00338 0.97121 1.70097 1.39714 1.45202 1.00543 0.85767 0.81971 0.78886 0.76857 1.21437 1.21572 1.20237 1.19844 0.91981 0.87502 0.95304 1.21008 0.94258 0.96970 0.97115 1.21163 0.96537 0.98094 0.98966 1.21388 1.00412 0.92157 0.99881 1.21332 0.94768 0.99870 0.99388 1.21322 0.98049 0.96458 0.98962 1.21007 0.98828 0.93569 1.01008 1.22498 1.00668 0.99515 0.96427 1.22614 0.99218 0.81376 0.97751 1.87871 1.74687 1.25216 1.43388 0.91105 0.90571 0.92067 0.93340 0.90552 0.90433 0.94407 0.93364 0.94047 0.90857 0.95168 0.86061 0.83601 0.83636 0.85252 0.89347 0.92184 0.94067 0.91537 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 7.93 71.98 0.57 -3.74 16 2 C 0.11 3.43 1.11 -10.76 -0.01 3.42 16 3 C -0.13 -3.64 8.85 71.98 0.64 -3.00 16 4 C -0.13 -5.19 4.22 30.68 0.13 -5.06 16 5 C 0.18 7.12 2.42 45.16 0.11 7.23 16 6 H 0.06 2.32 6.35 -2.39 -0.02 2.31 16 7 N -0.58 -27.75 2.38 -681.45 -1.62 -29.37 16 8 C -0.24 -12.90 8.19 84.03 0.69 -12.22 16 9 H 0.05 2.58 6.77 -2.91 -0.02 2.57 16 10 C -0.03 -1.65 4.90 84.86 0.42 -1.23 16 11 N -0.91 -52.11 11.40 21.65 0.25 -51.86 16 12 Si 0.94 44.93 29.61 68.60 2.03 46.96 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 C 0.18 8.36 5.32 85.63 0.46 8.81 16 17 C -0.09 -3.68 5.46 -19.87 -0.11 -3.79 16 18 C -0.13 -4.27 9.69 22.27 0.22 -4.05 16 19 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 20 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 21 C -0.13 -4.21 10.05 22.26 0.22 -3.99 16 22 C -0.13 -5.06 9.72 22.27 0.22 -4.84 16 23 C -0.15 -5.62 5.44 30.73 0.17 -5.45 16 24 C 0.07 2.00 6.51 72.01 0.47 2.47 16 25 O -0.39 -12.99 10.24 -148.98 -1.53 -14.51 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.56 4.98 -2.39 -0.01 1.55 16 29 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.07 3.96 5.35 -2.38 -0.01 3.94 16 36 H 0.03 1.35 7.94 -2.39 -0.02 1.33 16 37 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.09 4.01 8.06 -2.91 -0.02 3.98 16 42 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.04 1.76 6.86 -2.39 -0.02 1.74 16 44 H 0.07 1.70 6.34 -2.39 -0.02 1.69 16 45 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -61.79 350.74 4.70 -57.09 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.95 Total: 23.70 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 4.63 Total: -31.99 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -1.38 Total: -81.24 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.53 Total: -14.51 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.79 4.70 -57.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255546247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.850 kcal (2) G-P(sol) polarization free energy of solvation -61.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds