Wall clock time and date at job start Tue Mar 31 2020 06:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99781 * 2 1 4 4 C 1.53001 * 109.47365 * 90.00291 * 3 2 1 5 5 C 1.52998 * 109.47361 * 59.99812 * 4 3 2 6 6 C 1.53002 * 109.47110 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.46941 * 299.99738 * 4 3 2 8 8 C 1.34770 * 120.00165 * 179.72336 * 2 1 3 9 9 O 1.21284 * 120.00268 * 180.02562 * 8 2 1 10 10 C 1.50709 * 120.00088 * 0.02562 * 8 2 1 11 11 H 1.08997 * 109.46587 * 299.99919 * 10 8 2 12 12 C 1.50692 * 109.46906 * 59.99716 * 10 8 2 13 13 H 1.08001 * 120.00056 * 27.30113 * 12 10 8 14 14 C 1.37879 * 119.99766 * 207.29421 * 12 10 8 15 15 N 1.31508 * 120.00220 * 5.92079 * 14 12 10 16 16 Si 1.86803 * 119.99730 * 185.91614 * 14 12 10 17 17 H 1.48499 * 109.47455 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46885 * 120.00365 * 16 14 12 19 19 H 1.48499 * 109.47323 * 240.00048 * 16 14 12 20 20 C 1.50697 * 109.47179 * 180.02562 * 10 8 2 21 21 C 1.38237 * 119.99822 * 293.56981 * 20 10 8 22 22 C 1.38238 * 119.99872 * 179.78894 * 21 20 10 23 23 C 1.38234 * 119.99984 * 0.44043 * 22 21 20 24 24 C 1.38245 * 119.99854 * 359.80904 * 23 22 21 25 25 C 1.38230 * 120.00148 * 113.83803 * 20 10 8 26 26 H 1.08994 * 109.47162 * 90.00317 * 1 2 3 27 27 H 1.09005 * 109.46970 * 210.00120 * 1 2 3 28 28 H 1.08998 * 109.47133 * 329.99578 * 1 2 3 29 29 H 1.09007 * 109.47001 * 210.00202 * 3 2 1 30 30 H 1.09000 * 109.47190 * 330.00170 * 3 2 1 31 31 H 1.08998 * 109.47297 * 59.99597 * 5 4 3 32 32 H 1.08992 * 109.47185 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46910 * 300.00135 * 5 4 3 34 34 H 1.08993 * 109.47041 * 59.99871 * 6 4 3 35 35 H 1.09002 * 109.46966 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.46686 * 299.99282 * 6 4 3 37 37 H 1.09004 * 109.47148 * 59.99976 * 7 4 3 38 38 H 1.08992 * 109.47196 * 180.02562 * 7 4 3 39 39 H 1.09004 * 109.47012 * 300.00336 * 7 4 3 40 40 H 0.97001 * 120.00279 * 179.97438 * 15 14 12 41 41 H 1.08004 * 120.00269 * 359.97438 * 21 20 10 42 42 H 1.08000 * 119.99922 * 180.26796 * 22 21 20 43 43 H 1.08001 * 120.00223 * 179.83253 * 23 22 21 44 44 H 1.07998 * 119.99651 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.00400 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2794 0.6442 2.1637 6 6 3.2169 3.0359 1.4424 7 6 1.1157 1.8934 2.1638 8 6 2.1389 -1.1671 0.0056 9 8 3.3517 -1.1671 0.0061 10 6 1.3854 -2.4723 0.0114 11 1 0.7584 -2.5259 0.9014 12 6 0.5195 -2.5578 -1.2190 13 1 0.8029 -2.0283 -2.1166 14 6 -0.6346 -3.3120 -1.1987 15 7 -1.0414 -3.8614 -0.0753 16 14 -1.6203 -3.5533 -2.7670 17 1 -0.9546 -2.8378 -3.8852 18 1 -1.6992 -5.0019 -3.0841 19 1 -2.9904 -3.0125 -2.5788 20 6 2.3647 -3.6177 0.0176 21 6 3.1785 -3.8372 -1.0780 22 6 4.0800 -4.8852 -1.0705 23 6 4.1611 -5.7192 0.0289 24 6 3.3436 -5.5028 1.1225 25 6 2.4453 -4.4521 1.1167 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 3.1499 1.1385 -0.5139 30 1 1.6083 2.0284 -0.5138 31 1 4.2318 0.5138 1.6499 32 1 3.4607 0.9587 3.1914 33 1 2.7344 -0.2998 2.1638 34 1 2.6274 3.7952 0.9288 35 1 3.3982 3.3507 2.4701 36 1 4.1693 2.9059 0.9285 37 1 0.5706 0.9494 2.1638 38 1 1.2973 2.2085 3.1912 39 1 0.5265 2.6531 1.6499 40 1 -1.8535 -4.3917 -0.0609 41 1 3.1123 -3.1881 -1.9387 42 1 4.7188 -5.0541 -1.9247 43 1 4.8635 -6.5396 0.0337 44 1 3.4073 -6.1541 1.9816 45 1 1.8067 -4.2831 1.9712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264905563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:19 Heat of formation + Delta-G solvation = -37.831527 kcal Electronic energy + Delta-G solvation = -24406.836822 eV Core-core repulsion = 21195.184936 eV Total energy + Delta-G solvation = -3211.651886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21903 -39.65305 -37.95538 -35.81733 -34.91961 -32.80752 -31.53605 -29.50298 -28.65528 -28.14191 -27.59565 -26.64171 -25.15776 -23.19978 -22.31694 -20.32498 -19.44084 -18.65888 -17.70003 -17.44618 -16.87197 -16.58408 -16.19867 -15.71057 -15.50143 -15.13466 -14.76879 -14.53092 -14.22194 -14.05263 -13.89532 -13.85330 -13.36607 -13.33092 -13.21643 -12.93098 -12.88005 -12.76262 -12.72185 -12.46799 -12.33209 -12.15958 -11.95552 -11.86048 -11.63891 -11.58807 -11.48935 -11.23477 -10.63239 -10.25190 -9.56022 -9.30554 -9.24315 -8.17866 -6.25790 0.75688 0.81160 1.39707 1.44947 1.53262 2.02546 2.42361 2.46082 3.11299 3.26745 3.87472 3.90921 4.06699 4.20990 4.29413 4.30460 4.43355 4.51988 4.54528 4.56764 4.69586 4.74523 4.81426 4.85311 4.90526 4.94555 4.95619 4.99803 5.08105 5.10087 5.14423 5.21934 5.26855 5.35363 5.37580 5.45624 5.50860 5.53728 5.67476 5.78090 5.82073 5.94613 5.99965 6.25863 6.40390 6.68095 6.76941 7.38660 7.60218 8.90564 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.007052 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.952321 B = 3969.621778 C = 5431.252381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.083 4.083 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.138 4.138 8 C 0.526 3.474 9 O -0.586 6.586 10 C 0.058 3.942 11 H 0.059 0.941 12 C -0.504 4.504 13 H 0.048 0.952 14 C 0.040 3.960 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.036 4.036 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.142 4.142 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 8.297 2.909 9.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.338 5.338 3 C 0.000 4.000 4 C -0.084 4.084 5 C -0.180 4.180 6 C -0.188 4.188 7 C -0.195 4.195 8 C 0.317 3.683 9 O -0.468 6.468 10 C 0.036 3.964 11 H 0.077 0.923 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.162 4.162 15 N -0.540 5.540 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.037 4.037 21 C -0.128 4.128 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.148 4.148 25 C -0.160 4.160 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.961 8.212 2.978 9.591 hybrid contribution -0.814 -0.559 -0.825 1.287 sum 3.147 7.652 2.154 8.550 Atomic orbital electron populations 1.21777 0.78347 1.02490 1.01715 1.47672 1.07654 1.05244 1.73204 1.21601 0.96861 0.84883 0.96652 1.20961 0.96557 0.96019 0.94833 1.21715 0.99083 0.97652 0.99543 1.21738 0.99602 0.94861 1.02556 1.21929 0.95737 1.01514 1.00350 1.21246 0.87183 0.86664 0.73225 1.90540 1.15465 1.88312 1.52464 1.17957 0.92032 0.86566 0.99795 0.92273 1.20618 1.06114 1.31004 0.96463 0.93397 1.25431 0.97680 0.94828 0.98245 1.69991 1.23794 1.33601 1.26613 0.85724 0.78978 0.77658 0.80681 1.19556 1.21378 1.19701 1.20170 0.93784 0.96773 0.92977 1.20834 0.96442 0.97854 0.97662 1.21318 0.98997 0.95585 0.99462 1.21252 1.00717 1.00560 0.93637 1.21287 0.96348 0.97683 0.99467 1.21101 0.99640 0.97225 0.98041 0.93362 0.92179 0.89638 0.92484 0.88771 0.94248 0.92356 0.95852 0.90937 0.91569 0.93173 0.93762 0.92022 0.90957 0.92511 0.88820 0.84757 0.83604 0.84392 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 8.06 127.77 1.03 4.50 16 2 N -0.61 -22.90 2.40 -846.74 -2.04 -24.94 16 3 C 0.12 3.77 4.60 86.38 0.40 4.17 16 4 C -0.08 -2.19 0.84 -52.18 -0.04 -2.24 16 5 C -0.12 -3.99 7.14 71.98 0.51 -3.48 16 6 C -0.13 -2.63 8.47 71.98 0.61 -2.02 16 7 C -0.14 -3.24 7.22 71.98 0.52 -2.72 16 8 C 0.53 24.13 5.36 87.66 0.47 24.60 16 9 O -0.59 -29.05 13.19 -3.04 -0.04 -29.10 16 10 C 0.06 2.85 1.55 -13.03 -0.02 2.83 16 11 H 0.06 3.17 6.46 -2.39 -0.02 3.15 16 12 C -0.50 -25.66 5.49 25.60 0.14 -25.52 16 13 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 14 C 0.04 2.04 5.45 84.66 0.46 2.50 16 15 N -0.90 -48.04 12.88 21.45 0.28 -47.77 16 16 Si 0.94 41.15 29.54 68.60 2.03 43.17 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 C -0.04 -1.77 4.30 -19.87 -0.09 -1.85 16 21 C -0.11 -5.12 8.33 22.27 0.19 -4.94 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 23 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 24 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 25 C -0.14 -6.45 9.67 22.27 0.22 -6.23 16 26 H 0.05 1.72 7.90 -2.39 -0.02 1.70 16 27 H 0.06 2.47 6.13 -2.38 -0.01 2.46 16 28 H 0.09 2.32 6.05 -2.39 -0.01 2.30 16 29 H 0.06 1.98 7.43 -2.38 -0.02 1.97 16 30 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.04 1.41 7.72 -2.39 -0.02 1.39 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.02 0.89 6.13 -2.38 -0.01 0.88 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.22 5.99 -2.38 -0.01 1.21 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.39 8.08 -2.38 -0.02 1.37 16 40 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 41 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 42 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 44 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 45 H 0.10 4.67 7.96 -2.91 -0.02 4.65 16 Total: -1.00 -61.69 352.75 6.24 -55.45 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.95 Total: 28.25 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.06 Total: -25.08 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.76 Total: -72.70 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.04 Total: -29.10 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -61.69 6.24 -55.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264905563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.621 kcal (2) G-P(sol) polarization free energy of solvation -61.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds