Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 113.38088 * 2 1 4 4 C 1.53509 * 114.17446 * 133.08134 * 2 1 3 5 5 N 1.47472 * 87.93304 * 87.62187 * 4 2 1 6 6 C 1.46905 * 111.00085 * 138.70446 * 5 4 2 7 7 C 1.50698 * 109.47044 * 91.52674 * 6 5 4 8 8 C 1.38297 * 119.93202 * 90.00061 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.47477 * 87.83779 * 27.00849 * 5 4 2 23 23 C 1.53001 * 113.47609 * 87.75582 * 22 5 4 24 24 C 1.53001 * 113.47983 * 218.21899 * 22 5 4 25 25 H 1.09000 * 109.46995 * 306.42290 * 1 2 3 26 26 H 1.08994 * 109.47558 * 66.42346 * 1 2 3 27 27 H 1.09006 * 109.46752 * 186.43033 * 1 2 3 28 28 H 1.08993 * 109.47241 * 173.57740 * 3 2 1 29 29 H 1.09003 * 109.46863 * 293.57713 * 3 2 1 30 30 H 1.08999 * 109.47152 * 53.57663 * 3 2 1 31 31 H 1.09001 * 113.47570 * 332.85153 * 4 2 1 32 32 H 1.09000 * 113.47453 * 202.39029 * 4 2 1 33 33 H 1.09003 * 109.46647 * 331.52401 * 6 5 4 34 34 H 1.09004 * 109.46926 * 211.52627 * 6 5 4 35 35 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 36 36 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 37 37 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 39 39 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 40 40 H 1.09004 * 109.47339 * 79.50245 * 23 22 5 41 41 H 1.08999 * 109.47679 * 199.50803 * 23 22 5 42 42 H 1.09005 * 109.46854 * 319.50595 * 23 22 5 43 43 H 1.09005 * 109.46585 * 40.50034 * 24 22 5 44 44 H 1.09004 * 109.46995 * 160.49188 * 24 22 5 45 45 H 1.08994 * 109.47212 * 280.49698 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1587 -0.9566 1.0229 5 7 2.0811 -2.0160 0.0000 6 6 3.2987 -2.8379 -0.0001 7 6 3.1105 -4.0146 0.9224 8 6 2.5889 -5.1984 0.4333 9 6 2.4147 -6.2784 1.2762 10 6 2.7645 -6.1748 2.6163 11 8 2.5949 -7.2348 3.4473 12 6 2.1911 -8.3930 2.8875 13 1 1.9391 -8.4265 1.8379 14 6 2.0993 -9.5412 3.6595 15 7 2.4067 -9.5005 4.9380 16 14 1.5405 -11.1459 2.8838 17 1 2.7216 -11.8849 2.3697 18 1 0.8446 -11.9723 3.9027 19 1 0.6111 -10.8565 1.7623 20 6 3.2831 -4.9831 3.1056 21 6 3.4594 -3.9082 2.2565 22 6 2.1585 -0.9565 -1.0230 23 6 3.5918 -0.5829 -1.4063 24 6 1.2688 -1.2180 -2.2399 25 1 -0.3633 0.6102 0.8269 26 1 -0.3634 0.4110 -0.9418 27 1 -0.3633 -1.0213 0.1151 28 1 3.2187 1.3327 0.1149 29 1 1.9041 1.9010 -0.9419 30 1 1.7213 1.9800 0.8269 31 1 1.5249 -1.1428 1.8899 32 1 3.1798 -0.6904 1.2958 33 1 4.1418 -2.2383 0.3431 34 1 3.4951 -3.1963 -1.0107 35 1 2.3175 -5.2784 -0.6090 36 1 2.0070 -7.2023 0.8938 37 1 2.3421 -10.3036 5.4781 38 1 3.5519 -4.8981 4.1481 39 1 3.8661 -2.9824 2.6355 40 1 3.9860 -1.3224 -2.1034 41 1 3.5976 0.3999 -1.8775 42 1 4.2132 -0.5603 -0.5110 43 1 0.3133 -1.6263 -1.9104 44 1 1.0995 -0.2829 -2.7739 45 1 1.7595 -1.9310 -2.9024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319418330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 25.264559 kcal Electronic energy + Delta-G solvation = -23124.587737 eV Core-core repulsion = 19915.671903 eV Total energy + Delta-G solvation = -3208.915834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38373 -38.90104 -36.58781 -33.43072 -32.21146 -31.39406 -30.14587 -29.67941 -28.86487 -26.34267 -26.17410 -25.07276 -23.22639 -21.87359 -21.61733 -20.07024 -17.93517 -17.15828 -16.90829 -16.04467 -15.69019 -15.41510 -14.59852 -14.50789 -14.24892 -13.85166 -13.60388 -13.50485 -13.38248 -12.81858 -12.65686 -12.62218 -12.46253 -12.38642 -12.21742 -12.04085 -11.86320 -11.75731 -11.62899 -11.31910 -11.08142 -11.00102 -10.85316 -10.67060 -10.49036 -10.39313 -10.19111 -9.90696 -9.28246 -8.79906 -8.66487 -8.10930 -7.11048 -6.41485 -4.00080 2.28198 2.36344 3.14992 3.15832 3.20585 3.97931 3.99983 4.15472 4.54895 4.66348 4.89286 4.98315 5.05072 5.11266 5.14989 5.25909 5.34205 5.38953 5.43534 5.48105 5.51214 5.61984 5.63366 5.70242 5.72300 5.74445 5.78324 5.83210 5.89370 5.92056 5.97580 6.00405 6.09305 6.19506 6.26168 6.38182 6.43133 6.57527 6.76028 6.97969 7.09578 7.24186 7.30875 7.47471 7.50081 7.89019 8.04056 9.04436 9.75614 10.76821 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.003142 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.303152 B = 8909.290428 C = 9121.708716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.008 3.992 5 N -0.450 5.450 6 C 0.078 3.922 7 C -0.171 4.171 8 C -0.053 4.053 9 C -0.234 4.234 10 C 0.155 3.845 11 O -0.180 6.180 12 C -0.391 4.391 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.864 5.864 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.267 1.267 20 C -0.193 4.193 21 C -0.067 4.067 22 C 0.052 3.948 23 C -0.156 4.156 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.269 0.731 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 18.709 -12.015 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.121 4.121 5 N -0.171 5.171 6 C -0.049 4.049 7 C -0.173 4.173 8 C -0.072 4.072 9 C -0.253 4.253 10 C 0.101 3.899 11 O -0.083 6.083 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.500 5.500 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.213 4.213 21 C -0.086 4.086 22 C -0.038 4.038 23 C -0.214 4.214 24 C -0.184 4.184 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.583 17.980 -11.573 21.391 hybrid contribution 0.539 -0.442 -0.357 0.783 sum -0.044 17.538 -11.930 21.211 Atomic orbital electron populations 1.21476 0.92386 1.02741 1.01138 1.22074 0.96387 0.93708 0.96520 1.21720 1.00459 0.95458 1.01667 1.23927 1.00012 0.91490 0.96694 1.69145 1.34557 1.10482 1.02964 1.21339 0.91185 0.93646 0.98735 1.19029 1.09171 0.94888 0.94189 1.20540 0.96326 0.92203 0.98147 1.21147 1.09808 1.00291 0.94076 1.19379 0.92164 0.88896 0.89464 1.83974 1.74331 1.16638 1.33406 1.21325 1.45354 0.84163 0.95870 0.89114 1.25279 0.97018 0.98750 0.95495 1.70039 1.44990 1.29452 1.05480 0.85722 0.78865 0.80295 0.78612 1.19914 1.20282 1.19196 1.20157 1.08600 0.92519 0.99993 1.20427 0.98770 0.96676 0.92694 1.22773 0.94930 0.92143 0.93984 1.22086 0.95563 1.01953 1.01793 1.21606 0.99947 1.00853 0.95956 0.92773 0.92595 0.91206 0.92468 0.92515 0.92471 0.89885 0.91670 0.93787 0.91171 0.87756 0.85685 0.92084 0.86724 0.87740 0.92004 0.91740 0.92112 0.91377 0.92604 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 7.91 37.16 0.29 -0.85 16 2 C -0.09 -0.84 1.39 -153.98 -0.21 -1.05 16 3 C -0.14 -1.07 8.26 37.16 0.31 -0.76 16 4 C 0.01 0.09 6.53 -7.56 -0.05 0.04 16 5 N -0.45 -5.92 5.88 -230.02 -1.35 -7.27 16 6 C 0.08 1.10 4.01 -4.97 -0.02 1.08 16 7 C -0.17 -3.03 5.45 -104.58 -0.57 -3.60 16 8 C -0.05 -1.03 9.69 -39.61 -0.38 -1.41 16 9 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 10 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 11 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 12 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 13 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 16 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.19 -4.22 9.99 -39.39 -0.39 -4.61 16 21 C -0.07 -1.23 9.69 -39.60 -0.38 -1.62 16 22 C 0.05 0.54 1.20 -135.33 -0.16 0.38 16 23 C -0.16 -1.41 6.49 37.16 0.24 -1.17 16 24 C -0.13 -1.24 8.44 37.16 0.31 -0.93 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 7.74 -51.93 -0.40 0.07 16 27 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 28 H 0.06 0.44 6.82 -51.93 -0.35 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.07 8.12 -51.93 -0.42 0.64 16 32 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 33 H 0.04 0.57 5.86 -51.93 -0.30 0.26 16 34 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16 35 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.06 0.56 7.72 -51.93 -0.40 0.16 16 41 H 0.06 0.50 7.48 -51.93 -0.39 0.11 16 42 H 0.06 0.56 5.54 -51.93 -0.29 0.27 16 43 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -30.63 352.28 -8.90 -39.53 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.15 Total: 3.26 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.45 Total: -26.43 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.59 Total: -32.25 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.63 -8.90 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319418330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.791 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds