Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 113.38088 * 2 1 4 4 C 1.53509 * 114.17446 * 133.08134 * 2 1 3 5 5 N 1.47472 * 87.93304 * 87.62187 * 4 2 1 6 6 C 1.46905 * 111.00085 * 138.70446 * 5 4 2 7 7 C 1.50698 * 109.47044 * 91.52674 * 6 5 4 8 8 C 1.38297 * 119.93202 * 90.00061 * 7 6 5 9 9 C 1.38101 * 120.07230 * 180.02562 * 8 7 6 10 10 C 1.38886 * 119.92536 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06440 * 180.02562 * 10 9 8 12 12 C 1.34828 * 117.00075 * 5.53777 * 11 10 9 13 13 H 1.07993 * 120.00518 * 354.94289 * 12 11 10 14 14 C 1.38663 * 119.99751 * 174.94575 * 12 11 10 15 15 N 1.31556 * 120.00220 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99821 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47448 * 89.99502 * 16 14 12 18 18 H 1.48501 * 109.47175 * 209.99712 * 16 14 12 19 19 H 1.48506 * 109.47415 * 329.99678 * 16 14 12 20 20 C 1.38874 * 119.86623 * 0.27854 * 10 9 8 21 21 C 1.38110 * 119.92772 * 359.48927 * 20 10 9 22 22 C 1.47477 * 87.83779 * 27.00849 * 5 4 2 23 23 C 1.53001 * 113.47609 * 87.75582 * 22 5 4 24 24 C 1.53001 * 113.47983 * 218.21899 * 22 5 4 25 25 H 1.09000 * 109.46995 * 306.42290 * 1 2 3 26 26 H 1.08994 * 109.47558 * 66.42346 * 1 2 3 27 27 H 1.09006 * 109.46752 * 186.43033 * 1 2 3 28 28 H 1.08993 * 109.47241 * 173.57740 * 3 2 1 29 29 H 1.09003 * 109.46863 * 293.57713 * 3 2 1 30 30 H 1.08999 * 109.47152 * 53.57663 * 3 2 1 31 31 H 1.09001 * 113.47570 * 332.85153 * 4 2 1 32 32 H 1.09000 * 113.47453 * 202.39029 * 4 2 1 33 33 H 1.09003 * 109.46647 * 331.52401 * 6 5 4 34 34 H 1.09004 * 109.46926 * 211.52627 * 6 5 4 35 35 H 1.07999 * 119.96698 * 0.02562 * 8 7 6 36 36 H 1.07992 * 120.03608 * 179.97438 * 9 8 7 37 37 H 0.96996 * 120.00178 * 179.97438 * 15 14 12 38 38 H 1.07996 * 120.03745 * 179.72497 * 20 10 9 39 39 H 1.07996 * 119.96227 * 180.23396 * 21 20 10 40 40 H 1.09004 * 109.47339 * 79.50245 * 23 22 5 41 41 H 1.08999 * 109.47679 * 199.50803 * 23 22 5 42 42 H 1.09005 * 109.46854 * 319.50595 * 23 22 5 43 43 H 1.09005 * 109.46585 * 40.50034 * 24 22 5 44 44 H 1.09004 * 109.46995 * 160.49188 * 24 22 5 45 45 H 1.08994 * 109.47212 * 280.49698 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1587 -0.9566 1.0229 5 7 2.0811 -2.0160 0.0000 6 6 3.2987 -2.8379 -0.0001 7 6 3.1105 -4.0146 0.9224 8 6 2.5889 -5.1984 0.4333 9 6 2.4147 -6.2784 1.2762 10 6 2.7645 -6.1748 2.6163 11 8 2.5949 -7.2348 3.4473 12 6 2.1911 -8.3930 2.8875 13 1 1.9391 -8.4265 1.8379 14 6 2.0993 -9.5412 3.6595 15 7 2.4067 -9.5005 4.9380 16 14 1.5405 -11.1459 2.8838 17 1 2.7216 -11.8849 2.3697 18 1 0.8446 -11.9723 3.9027 19 1 0.6111 -10.8565 1.7623 20 6 3.2831 -4.9831 3.1056 21 6 3.4594 -3.9082 2.2565 22 6 2.1585 -0.9565 -1.0230 23 6 3.5918 -0.5829 -1.4063 24 6 1.2688 -1.2180 -2.2399 25 1 -0.3633 0.6102 0.8269 26 1 -0.3634 0.4110 -0.9418 27 1 -0.3633 -1.0213 0.1151 28 1 3.2187 1.3327 0.1149 29 1 1.9041 1.9010 -0.9419 30 1 1.7213 1.9800 0.8269 31 1 1.5249 -1.1428 1.8899 32 1 3.1798 -0.6904 1.2958 33 1 4.1418 -2.2383 0.3431 34 1 3.4951 -3.1963 -1.0107 35 1 2.3175 -5.2784 -0.6090 36 1 2.0070 -7.2023 0.8938 37 1 2.3421 -10.3036 5.4781 38 1 3.5519 -4.8981 4.1481 39 1 3.8661 -2.9824 2.6355 40 1 3.9860 -1.3224 -2.1034 41 1 3.5976 0.3999 -1.8775 42 1 4.2132 -0.5603 -0.5110 43 1 0.3133 -1.6263 -1.9104 44 1 1.0995 -0.2829 -2.7739 45 1 1.7595 -1.9310 -2.9024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319418330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = 6.406135 kcal Electronic energy + Delta-G solvation = -23125.405500 eV Core-core repulsion = 19915.671903 eV Total energy + Delta-G solvation = -3209.733597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.26900 -40.69038 -38.34085 -34.66741 -34.05902 -32.21541 -31.81385 -31.02878 -29.58633 -27.85731 -26.95589 -26.73960 -24.29634 -23.56236 -22.74887 -21.45597 -19.83890 -18.82971 -17.94931 -17.00826 -16.63515 -16.56725 -16.25243 -16.17259 -15.56412 -15.47222 -15.02155 -14.79364 -14.51629 -14.34609 -14.00966 -13.66068 -13.46543 -13.28797 -13.21298 -13.13628 -12.95869 -12.77459 -12.61981 -12.53013 -12.48045 -12.38281 -12.19848 -12.10468 -11.77091 -11.72196 -11.19940 -11.16097 -10.77988 -10.68919 -9.78197 -9.62300 -8.88992 -8.47795 -6.15958 0.59662 0.69303 1.33911 1.43442 1.51630 2.17357 2.77061 3.06329 3.27140 3.37816 3.51395 3.78417 3.95349 4.06668 4.15457 4.19011 4.22587 4.33416 4.36171 4.46632 4.59852 4.61036 4.70703 4.72358 4.78983 4.87003 4.90616 4.92367 4.95222 4.97467 5.07335 5.11470 5.14787 5.16239 5.21108 5.24961 5.29114 5.35589 5.44428 5.53453 5.62587 5.66363 5.72125 5.86375 6.02483 6.20746 6.32848 6.96890 7.78127 8.75690 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.003142 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.303152 B = 8909.290428 C = 9121.708716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 C -0.132 4.132 4 C 0.001 3.999 5 N -0.475 5.475 6 C 0.083 3.917 7 C -0.146 4.146 8 C -0.056 4.056 9 C -0.242 4.242 10 C 0.113 3.887 11 O -0.234 6.234 12 C -0.415 4.415 13 H 0.100 0.900 14 C -0.023 4.023 15 N -0.921 5.921 16 Si 1.019 2.981 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.204 4.204 21 C -0.060 4.060 22 C 0.055 3.945 23 C -0.154 4.154 24 C -0.126 4.126 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.244 21.178 -14.827 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.189 4.189 4 C -0.128 4.128 5 N -0.197 5.197 6 C -0.045 4.045 7 C -0.148 4.148 8 C -0.074 4.074 9 C -0.261 4.261 10 C 0.062 3.938 11 O -0.140 6.140 12 C -0.491 4.491 13 H 0.117 0.883 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.177 1.177 20 C -0.223 4.223 21 C -0.078 4.078 22 C -0.035 4.035 23 C -0.212 4.212 24 C -0.183 4.183 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.249 20.508 -14.423 25.073 hybrid contribution 0.468 -0.858 0.376 1.047 sum 0.219 19.651 -14.046 24.156 Atomic orbital electron populations 1.21457 0.92579 1.01485 1.02099 1.22045 0.96224 0.94543 0.95097 1.21699 1.00652 0.94027 1.02533 1.24012 1.00556 0.91862 0.96325 1.69090 1.33961 1.11851 1.04775 1.21339 0.92496 0.92491 0.98165 1.19587 1.05111 0.95595 0.94460 1.20864 0.95828 0.91686 0.99047 1.21233 1.10013 1.01205 0.93697 1.19906 0.94260 0.89063 0.90536 1.83936 1.77069 1.17806 1.35236 1.21816 1.45884 0.84793 0.96572 0.88294 1.26597 0.96849 1.02601 0.95983 1.70183 1.47613 1.30803 1.07382 0.84587 0.78841 0.74797 0.77980 1.18709 1.19450 1.17746 1.20421 1.08594 0.92652 1.00672 1.20806 0.97612 0.96757 0.92633 1.22868 0.96118 0.90949 0.93603 1.22082 0.94178 1.02980 1.01928 1.21612 0.99118 1.01739 0.95852 0.92219 0.91304 0.93508 0.91894 0.91326 0.92083 0.91649 0.90537 0.91897 0.90128 0.85036 0.86581 0.91818 0.87014 0.84164 0.91944 0.90005 0.92102 0.92754 0.90755 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 7.91 71.98 0.57 -1.45 16 2 C -0.08 -1.29 1.39 -51.84 -0.07 -1.36 16 3 C -0.13 -1.57 8.26 71.98 0.59 -0.97 16 4 C 0.00 0.03 6.53 83.57 0.55 0.57 16 5 N -0.47 -11.15 5.88 -881.65 -5.19 -16.33 16 6 C 0.08 2.02 4.01 85.56 0.34 2.36 16 7 C -0.15 -4.84 5.45 -19.84 -0.11 -4.95 16 8 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 9 C -0.24 -11.16 9.17 22.39 0.21 -10.95 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 O -0.23 -14.57 9.76 -22.72 -0.22 -14.80 16 12 C -0.41 -24.93 9.49 67.92 0.64 -24.28 16 13 H 0.10 5.50 5.20 -2.91 -0.02 5.48 16 14 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 15 N -0.92 -57.75 13.67 21.62 0.30 -57.45 16 16 Si 1.02 43.88 29.55 68.60 2.03 45.91 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 20 C -0.20 -9.10 9.99 22.39 0.22 -8.88 16 21 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 22 C 0.05 0.95 1.20 0.80 0.00 0.95 16 23 C -0.15 -2.12 6.49 71.98 0.47 -1.65 16 24 C -0.13 -2.09 8.44 71.98 0.61 -1.49 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.98 7.74 -2.39 -0.02 0.96 16 27 H 0.05 1.01 7.65 -2.38 -0.02 0.99 16 28 H 0.06 0.70 6.82 -2.39 -0.02 0.68 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 32 H 0.08 1.41 6.56 -2.39 -0.02 1.40 16 33 H 0.06 1.34 5.86 -2.39 -0.01 1.33 16 34 H 0.08 1.85 7.58 -2.39 -0.02 1.83 16 35 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 40 H 0.06 0.87 7.72 -2.39 -0.02 0.85 16 41 H 0.08 0.87 7.48 -2.39 -0.02 0.86 16 42 H 0.06 0.85 5.54 -2.38 -0.01 0.84 16 43 H 0.05 1.06 7.13 -2.38 -0.02 1.04 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.16 352.28 2.95 -68.21 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.96 Total: 25.16 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 5.07 Total: -50.70 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -4.89 Total: -73.78 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.22 Total: -14.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.16 2.95 -68.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319418330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.616 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds