Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46781 * 2 1 4 4 C 1.38383 * 119.85552 * 265.23634 * 3 2 1 5 5 C 1.37935 * 120.14630 * 180.28133 * 4 3 2 6 6 C 1.39594 * 119.85235 * 359.74065 * 5 4 3 7 7 C 1.47845 * 120.14730 * 180.02562 * 6 5 4 8 8 O 1.21550 * 119.99754 * 134.32753 * 7 6 5 9 9 N 1.34768 * 120.00144 * 314.33645 * 7 6 5 10 10 C 1.46505 * 120.00226 * 5.74276 * 9 7 6 11 11 C 1.52998 * 109.47139 * 97.52086 * 10 9 7 12 12 C 1.46500 * 120.00352 * 185.74886 * 9 7 6 13 13 C 1.50704 * 109.47220 * 89.99356 * 12 9 7 14 14 H 1.08001 * 119.99707 * 0.02562 * 13 12 9 15 15 C 1.37882 * 120.00207 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99723 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47072 * 89.99918 * 17 15 13 19 19 H 1.48500 * 109.46965 * 210.00093 * 17 15 13 20 20 H 1.48504 * 109.46973 * 329.99782 * 17 15 13 21 21 C 1.39562 * 119.71286 * 0.02562 * 6 5 4 22 22 C 1.37980 * 119.84983 * 359.97438 * 21 6 5 23 23 C 1.50703 * 119.92648 * 179.97438 * 22 21 6 24 24 C 1.53002 * 109.46948 * 264.99511 * 23 22 21 25 25 H 1.08994 * 109.47326 * 60.00032 * 1 2 3 26 26 H 1.08998 * 109.47057 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47401 * 299.99379 * 1 2 3 28 28 H 1.09000 * 109.46974 * 240.00302 * 2 1 3 29 29 H 1.08990 * 109.47610 * 120.00380 * 2 1 3 30 30 H 1.08007 * 119.92785 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.07583 * 179.72382 * 5 4 3 32 32 H 1.08997 * 109.47335 * 217.52493 * 10 9 7 33 33 H 1.09002 * 109.46736 * 337.52474 * 10 9 7 34 34 H 1.09005 * 109.46851 * 69.38424 * 11 10 9 35 35 H 1.08993 * 109.47454 * 189.38577 * 11 10 9 36 36 H 1.09002 * 109.47447 * 309.38837 * 11 10 9 37 37 H 1.08996 * 109.47231 * 209.99500 * 12 9 7 38 38 H 1.09003 * 109.46754 * 329.99915 * 12 9 7 39 39 H 0.97000 * 120.00173 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.07870 * 180.02562 * 21 6 5 41 41 H 1.09007 * 109.46946 * 144.99837 * 23 22 21 42 42 H 1.08993 * 109.47305 * 25.00087 * 23 22 21 43 43 H 1.08993 * 109.47588 * 300.00403 * 24 23 22 44 44 H 1.09006 * 109.46524 * 60.00251 * 24 23 22 45 45 H 1.08996 * 109.46823 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3558 2.0371 -1.1960 5 6 2.8216 3.3354 -1.2025 6 6 2.9611 4.0296 0.0005 7 6 3.4592 5.4217 0.0011 8 8 2.8985 6.2674 0.6703 9 7 4.5346 5.7529 -0.7405 10 6 5.1338 4.7668 -1.6433 11 6 4.6101 4.9908 -3.0632 12 6 5.1047 7.0989 -0.6439 13 6 6.1562 7.1229 0.4354 14 1 6.3779 6.2251 0.9933 15 6 6.8351 8.2910 0.7107 16 7 7.7531 8.3118 1.6522 17 14 6.4510 9.8440 -0.2537 18 1 5.3738 10.6001 0.4341 19 1 7.6703 10.6873 -0.3401 20 1 6.0037 9.4790 -1.6220 21 6 2.6284 3.4039 1.2028 22 6 2.1636 2.1048 1.1953 23 6 1.8044 1.4272 2.4926 24 6 2.9992 0.6109 2.9895 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8898 30 1 2.2473 1.4989 -2.1262 31 1 3.0780 3.8138 -2.1363 32 1 6.2181 4.8775 -1.6342 33 1 4.8683 3.7627 -1.3123 34 1 5.0144 5.9236 -3.4566 35 1 4.9212 4.1628 -3.7001 36 1 3.5216 5.0459 -3.0447 37 1 5.5567 7.3714 -1.5976 38 1 4.3163 7.8106 -0.3988 39 1 8.2304 9.1336 1.8462 40 1 2.7337 3.9356 2.1370 41 1 0.9531 0.7653 2.3332 42 1 1.5446 2.1806 3.2362 43 1 3.2590 -0.1425 2.2459 44 1 3.8504 1.2729 3.1488 45 1 2.7395 0.1212 3.9280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320622717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -21.144416 kcal Electronic energy + Delta-G solvation = -23388.072638 eV Core-core repulsion = 20177.144360 eV Total energy + Delta-G solvation = -3210.928278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25034 -38.59285 -35.54219 -34.62820 -33.48205 -32.65844 -30.52585 -29.95350 -29.21153 -27.61667 -24.73890 -23.85614 -22.98682 -22.34331 -21.55609 -20.73865 -18.48216 -16.93635 -16.65632 -16.37240 -15.86446 -15.32421 -14.74637 -14.41393 -14.15915 -13.85066 -13.77995 -13.70595 -13.39779 -13.12660 -13.01103 -12.59177 -12.50539 -12.39949 -12.18124 -11.89745 -11.78342 -11.58509 -11.41740 -11.38674 -11.17888 -10.99909 -10.75430 -10.71116 -10.52181 -10.49184 -10.15170 -9.54390 -9.11272 -8.71788 -8.58586 -8.41541 -7.72095 -6.08337 -4.07242 1.17079 1.46507 3.29039 3.29776 3.35715 3.37779 3.70955 4.02364 4.40147 4.62029 4.72837 4.81835 4.88395 4.95986 5.16200 5.19673 5.22421 5.26762 5.31680 5.33041 5.44416 5.52125 5.54270 5.57708 5.67928 5.69325 5.71021 5.83544 5.91457 5.97024 6.00418 6.05365 6.16413 6.17626 6.22911 6.39274 6.46426 6.56699 6.66139 6.76003 6.95820 7.03062 7.35115 7.61246 8.23729 8.47188 8.91114 8.97361 9.51850 11.04996 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.004143 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.842303 B = 6756.327122 C = 7390.037497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.071 4.071 4 C -0.125 4.125 5 C -0.108 4.108 6 C -0.113 4.113 7 C 0.551 3.449 8 O -0.538 6.538 9 N -0.584 5.584 10 C 0.096 3.904 11 C -0.175 4.175 12 C 0.215 3.785 13 C -0.530 4.530 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.065 4.065 22 C -0.087 4.087 23 C -0.087 4.087 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 -18.074 -6.395 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.117 4.117 7 C 0.338 3.662 8 O -0.416 6.416 9 N -0.315 5.315 10 C -0.028 4.028 11 C -0.233 4.233 12 C 0.095 3.905 13 C -0.569 4.569 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.536 5.536 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.084 4.084 22 C -0.087 4.087 23 C -0.124 4.124 24 C -0.206 4.206 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.611 -17.470 -5.954 21.806 hybrid contribution 0.101 0.974 -0.456 1.080 sum -11.511 -16.496 -6.410 21.112 Atomic orbital electron populations 1.21763 0.94820 1.01508 1.02390 1.20608 0.96139 0.92859 1.02916 1.19816 0.98665 0.95938 0.92660 1.20898 1.00952 0.95050 0.97372 1.21829 0.97965 0.94566 0.98202 1.20114 1.02263 0.94930 0.94358 1.18253 0.80722 0.87252 0.80015 1.90744 1.57771 1.50588 1.42463 1.47844 1.28454 1.14687 1.40486 1.21693 0.99499 0.92759 0.88842 1.22358 1.01107 1.02508 0.97282 1.19676 0.94339 0.79077 0.97411 1.21340 1.18765 0.98346 1.18411 0.90729 1.24848 0.94622 0.98565 0.94908 1.69896 1.24640 1.27895 1.31124 0.86852 0.78136 0.83710 0.81018 1.19864 1.21049 1.19045 1.21080 0.95942 0.93747 0.97611 1.19622 1.00435 0.93895 0.94768 1.20585 0.98622 0.99260 0.93907 1.21776 0.98190 0.99994 1.00609 0.92531 0.92528 0.92361 0.91168 0.90599 0.85933 0.84260 0.89939 0.90226 0.91883 0.91707 0.92354 0.95092 0.94389 0.92552 0.85336 0.90759 0.90944 0.92537 0.92213 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 37.16 0.36 -0.77 16 2 C -0.09 -0.75 5.38 -27.88 -0.15 -0.90 16 3 C -0.07 -0.81 5.14 -104.53 -0.54 -1.34 16 4 C -0.12 -1.45 9.66 -39.64 -0.38 -1.84 16 5 C -0.11 -1.50 7.42 -39.19 -0.29 -1.79 16 6 C -0.11 -1.98 5.08 -104.97 -0.53 -2.51 16 7 C 0.55 12.08 7.27 -12.33 -0.09 12.00 16 8 O -0.54 -13.98 16.54 5.32 0.09 -13.89 16 9 N -0.58 -12.52 2.46 -176.17 -0.43 -12.95 16 10 C 0.10 1.58 5.60 -4.04 -0.02 1.56 16 11 C -0.17 -2.28 9.14 37.16 0.34 -1.94 16 12 C 0.22 5.38 4.29 -5.19 -0.02 5.36 16 13 C -0.53 -15.46 9.94 -34.44 -0.34 -15.80 16 14 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 C -0.06 -1.05 9.32 -39.18 -0.37 -1.42 16 22 C -0.09 -1.12 5.13 -104.68 -0.54 -1.66 16 23 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 24 C -0.15 -1.42 9.71 37.16 0.36 -1.06 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 28 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 29 H 0.08 0.60 5.57 -51.93 -0.29 0.31 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.14 1.78 3.70 -52.48 -0.19 1.58 16 32 H 0.08 1.42 8.12 -51.93 -0.42 0.99 16 33 H 0.08 1.19 5.10 -51.93 -0.26 0.93 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.75 6.33 -51.93 -0.33 0.42 16 37 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 38 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.07 0.65 5.61 -51.92 -0.29 0.36 16 42 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 43 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -34.06 354.14 -8.39 -42.45 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.02 Total: 0.15 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.46 Total: -11.12 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.34 Total: -40.05 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.06 -8.39 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320622717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.302 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds