Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46781 * 2 1 4 4 C 1.38383 * 119.85552 * 265.23634 * 3 2 1 5 5 C 1.37935 * 120.14630 * 180.28133 * 4 3 2 6 6 C 1.39594 * 119.85235 * 359.74065 * 5 4 3 7 7 C 1.47845 * 120.14730 * 180.02562 * 6 5 4 8 8 O 1.21550 * 119.99754 * 134.32753 * 7 6 5 9 9 N 1.34768 * 120.00144 * 314.33645 * 7 6 5 10 10 C 1.46505 * 120.00226 * 5.74276 * 9 7 6 11 11 C 1.52998 * 109.47139 * 97.52086 * 10 9 7 12 12 C 1.46500 * 120.00352 * 185.74886 * 9 7 6 13 13 C 1.50704 * 109.47220 * 89.99356 * 12 9 7 14 14 H 1.08001 * 119.99707 * 0.02562 * 13 12 9 15 15 C 1.37882 * 120.00207 * 180.02562 * 13 12 9 16 16 N 1.31511 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99723 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47072 * 89.99918 * 17 15 13 19 19 H 1.48500 * 109.46965 * 210.00093 * 17 15 13 20 20 H 1.48504 * 109.46973 * 329.99782 * 17 15 13 21 21 C 1.39562 * 119.71286 * 0.02562 * 6 5 4 22 22 C 1.37980 * 119.84983 * 359.97438 * 21 6 5 23 23 C 1.50703 * 119.92648 * 179.97438 * 22 21 6 24 24 C 1.53002 * 109.46948 * 264.99511 * 23 22 21 25 25 H 1.08994 * 109.47326 * 60.00032 * 1 2 3 26 26 H 1.08998 * 109.47057 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47401 * 299.99379 * 1 2 3 28 28 H 1.09000 * 109.46974 * 240.00302 * 2 1 3 29 29 H 1.08990 * 109.47610 * 120.00380 * 2 1 3 30 30 H 1.08007 * 119.92785 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.07583 * 179.72382 * 5 4 3 32 32 H 1.08997 * 109.47335 * 217.52493 * 10 9 7 33 33 H 1.09002 * 109.46736 * 337.52474 * 10 9 7 34 34 H 1.09005 * 109.46851 * 69.38424 * 11 10 9 35 35 H 1.08993 * 109.47454 * 189.38577 * 11 10 9 36 36 H 1.09002 * 109.47447 * 309.38837 * 11 10 9 37 37 H 1.08996 * 109.47231 * 209.99500 * 12 9 7 38 38 H 1.09003 * 109.46754 * 329.99915 * 12 9 7 39 39 H 0.97000 * 120.00173 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.07870 * 180.02562 * 21 6 5 41 41 H 1.09007 * 109.46946 * 144.99837 * 23 22 21 42 42 H 1.08993 * 109.47305 * 25.00087 * 23 22 21 43 43 H 1.08993 * 109.47588 * 300.00403 * 24 23 22 44 44 H 1.09006 * 109.46524 * 60.00251 * 24 23 22 45 45 H 1.08996 * 109.46823 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3558 2.0371 -1.1960 5 6 2.8216 3.3354 -1.2025 6 6 2.9611 4.0296 0.0005 7 6 3.4592 5.4217 0.0011 8 8 2.8985 6.2674 0.6703 9 7 4.5346 5.7529 -0.7405 10 6 5.1338 4.7668 -1.6433 11 6 4.6101 4.9908 -3.0632 12 6 5.1047 7.0989 -0.6439 13 6 6.1562 7.1229 0.4354 14 1 6.3779 6.2251 0.9933 15 6 6.8351 8.2910 0.7107 16 7 7.7531 8.3118 1.6522 17 14 6.4510 9.8440 -0.2537 18 1 5.3738 10.6001 0.4341 19 1 7.6703 10.6873 -0.3401 20 1 6.0037 9.4790 -1.6220 21 6 2.6284 3.4039 1.2028 22 6 2.1636 2.1048 1.1953 23 6 1.8044 1.4272 2.4926 24 6 2.9992 0.6109 2.9895 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8898 30 1 2.2473 1.4989 -2.1262 31 1 3.0780 3.8138 -2.1363 32 1 6.2181 4.8775 -1.6342 33 1 4.8683 3.7627 -1.3123 34 1 5.0144 5.9236 -3.4566 35 1 4.9212 4.1628 -3.7001 36 1 3.5216 5.0459 -3.0447 37 1 5.5567 7.3714 -1.5976 38 1 4.3163 7.8106 -0.3988 39 1 8.2304 9.1336 1.8462 40 1 2.7337 3.9356 2.1370 41 1 0.9531 0.7653 2.3332 42 1 1.5446 2.1806 3.2362 43 1 3.2590 -0.1425 2.2459 44 1 3.8504 1.2729 3.1488 45 1 2.7395 0.1212 3.9280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320622717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -41.444012 kcal Electronic energy + Delta-G solvation = -23388.952895 eV Core-core repulsion = 20177.144360 eV Total energy + Delta-G solvation = -3211.808535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56079 -39.96670 -37.21641 -35.75713 -34.75305 -34.32513 -32.08139 -31.03613 -30.31199 -29.32815 -25.83741 -25.03245 -24.45621 -23.74467 -22.48771 -21.93677 -19.97186 -19.15558 -18.10615 -17.70035 -16.96787 -16.74975 -16.18873 -16.08033 -15.40212 -15.06473 -14.87397 -14.78435 -14.56842 -14.40678 -14.21213 -13.98628 -13.79260 -13.51277 -13.42925 -13.24852 -13.15584 -12.82696 -12.66639 -12.52650 -12.32668 -12.11803 -12.06855 -12.02723 -11.95972 -11.78871 -11.61054 -11.39642 -10.87429 -10.80076 -9.83216 -9.55290 -9.44108 -8.38267 -6.44397 0.01554 0.39435 1.29493 1.34287 1.42805 1.73001 2.21894 2.27791 2.76177 2.95610 3.52338 3.75497 3.86229 3.93232 4.05352 4.14061 4.23620 4.32366 4.44991 4.47405 4.51264 4.56447 4.58567 4.63159 4.71471 4.77871 4.81266 4.92215 4.92867 4.95737 5.02432 5.05581 5.11622 5.13970 5.23916 5.33807 5.36083 5.39932 5.41108 5.49765 5.53141 5.58103 5.69146 6.00397 6.18737 6.56085 6.58166 7.13600 7.28320 8.78847 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.004143 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.842303 B = 6756.327122 C = 7390.037497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.114 4.114 5 C -0.104 4.104 6 C -0.143 4.143 7 C 0.541 3.459 8 O -0.597 6.597 9 N -0.590 5.590 10 C 0.089 3.911 11 C -0.165 4.165 12 C 0.225 3.775 13 C -0.542 4.542 14 H 0.025 0.975 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.271 1.271 20 H -0.237 1.237 21 C -0.091 4.091 22 C -0.087 4.087 23 C -0.086 4.086 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.270 0.730 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.035 0.965 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -20.680 -9.547 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.060 4.060 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.146 4.146 7 C 0.331 3.669 8 O -0.479 6.479 9 N -0.319 5.319 10 C -0.033 4.033 11 C -0.223 4.223 12 C 0.103 3.897 13 C -0.581 4.581 14 H 0.044 0.956 15 C -0.185 4.185 16 N -0.583 5.583 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.160 1.160 21 C -0.110 4.110 22 C -0.087 4.087 23 C -0.123 4.123 24 C -0.203 4.203 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.956 -20.128 -9.144 25.625 hybrid contribution 0.524 1.617 0.622 1.810 sum -12.432 -18.512 -8.522 23.872 Atomic orbital electron populations 1.21766 0.93995 1.02714 1.01973 1.20716 0.96651 0.90446 1.04529 1.20295 0.96505 0.97446 0.91790 1.21349 0.98835 0.93906 0.99105 1.21968 0.97758 0.95419 0.97022 1.19845 1.05386 0.92890 0.96464 1.19084 0.80291 0.88854 0.78696 1.90680 1.59767 1.52700 1.44762 1.47964 1.28299 1.14366 1.41309 1.22018 0.98729 0.92346 0.90196 1.22296 1.01242 1.03887 0.94845 1.19345 0.92498 0.81179 0.96677 1.21541 1.20187 0.96939 1.19384 0.95649 1.25863 0.94110 1.02542 0.96016 1.70046 1.25940 1.29310 1.33029 0.85697 0.78200 0.78417 0.80549 1.20187 1.19560 1.16005 1.21029 0.98139 0.95527 0.96307 1.19866 0.99459 0.92490 0.96871 1.20654 0.99806 0.99363 0.92510 1.21762 0.96880 0.99679 1.01960 0.92693 0.90545 0.93143 0.88972 0.89690 0.81818 0.82847 0.91147 0.88584 0.92539 0.87639 0.91849 0.92786 0.96326 0.92107 0.88308 0.88303 0.91966 0.91262 0.94573 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.72 71.98 0.70 -0.94 16 2 C -0.09 -1.06 5.38 29.85 0.16 -0.90 16 3 C -0.06 -1.19 5.14 -19.81 -0.10 -1.29 16 4 C -0.11 -2.23 9.66 22.23 0.21 -2.02 16 5 C -0.10 -2.71 7.42 22.53 0.17 -2.54 16 6 C -0.14 -5.16 5.08 -20.09 -0.10 -5.27 16 7 C 0.54 25.22 7.27 86.79 0.63 25.85 16 8 O -0.60 -33.54 16.54 -3.87 -0.06 -33.60 16 9 N -0.59 -26.22 2.46 -829.57 -2.04 -28.27 16 10 C 0.09 2.89 5.60 86.38 0.48 3.38 16 11 C -0.17 -3.86 9.14 71.98 0.66 -3.20 16 12 C 0.23 11.59 4.29 85.63 0.37 11.96 16 13 C -0.54 -33.34 9.94 25.60 0.25 -33.09 16 14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 15 C 0.01 0.79 5.47 84.66 0.46 1.25 16 16 N -0.94 -60.99 13.96 21.45 0.30 -60.69 16 17 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 21 C -0.09 -3.13 9.32 22.53 0.21 -2.92 16 22 C -0.09 -2.19 5.13 -19.90 -0.10 -2.29 16 23 C -0.09 -1.71 5.38 29.85 0.16 -1.55 16 24 C -0.15 -2.62 9.71 71.98 0.70 -1.92 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.65 6.79 -2.39 -0.02 0.63 16 28 H 0.09 0.82 8.05 -2.39 -0.02 0.80 16 29 H 0.08 0.95 5.57 -2.39 -0.01 0.93 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 3.48 3.70 -2.91 -0.01 3.47 16 32 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 33 H 0.10 2.79 5.10 -2.39 -0.01 2.78 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.44 6.33 -2.39 -0.02 1.43 16 37 H 0.05 2.52 7.13 -2.39 -0.02 2.50 16 38 H 0.02 1.03 6.78 -2.39 -0.02 1.02 16 39 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 40 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.10 1.48 5.61 -2.38 -0.01 1.46 16 42 H 0.06 1.35 8.05 -2.39 -0.02 1.33 16 43 H 0.07 1.06 6.76 -2.39 -0.02 1.04 16 44 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -81.61 354.14 5.86 -75.75 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.92 Total: 14.86 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.86 Total: -15.49 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -1.74 Total: -88.96 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.06 Total: -33.60 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -81.61 5.86 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320622717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.302 kcal (2) G-P(sol) polarization free energy of solvation -81.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds