Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47092 * 2 1 4 4 C 1.38378 * 119.86018 * 265.23372 * 3 2 1 5 5 C 1.37928 * 120.14925 * 180.27782 * 4 3 2 6 6 C 1.39600 * 119.85408 * 359.74693 * 5 4 3 7 7 C 1.47839 * 120.14733 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99905 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00225 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00211 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.46809 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00479 * 0.02562 * 13 12 11 15 15 C 1.37888 * 120.00117 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99513 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00344 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47084 * 60.00113 * 17 15 13 19 19 H 1.48497 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47012 * 300.00355 * 17 15 13 21 21 C 1.39563 * 119.70863 * 359.97438 * 6 5 4 22 22 C 1.37983 * 119.85128 * 0.02562 * 21 6 5 23 23 C 1.50698 * 119.92312 * 179.97438 * 22 21 6 24 24 C 1.53006 * 109.47184 * 264.99735 * 23 22 21 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46924 * 299.99562 * 1 2 3 27 27 H 1.08997 * 109.46725 * 59.99739 * 1 2 3 28 28 H 1.09006 * 109.46567 * 240.00241 * 2 1 3 29 29 H 1.08997 * 109.46725 * 120.00261 * 2 1 3 30 30 H 1.08000 * 119.92143 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.07723 * 179.72102 * 5 4 3 32 32 H 0.97001 * 119.99795 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47433 * 299.99986 * 10 9 7 34 34 H 1.08999 * 109.47306 * 60.00288 * 10 9 7 35 35 H 1.08992 * 109.47112 * 300.00311 * 11 10 9 36 36 H 1.09007 * 109.47085 * 60.00212 * 11 10 9 37 37 H 1.08998 * 109.46848 * 299.99609 * 12 11 10 38 38 H 1.08994 * 109.46933 * 59.99937 * 12 11 10 39 39 H 0.96996 * 119.99962 * 179.97438 * 16 15 13 40 40 H 1.07991 * 120.07331 * 180.02562 * 21 6 5 41 41 H 1.09001 * 109.46665 * 145.00124 * 23 22 21 42 42 H 1.08993 * 109.47304 * 24.99680 * 23 22 21 43 43 H 1.09001 * 109.46998 * 60.00038 * 24 23 22 44 44 H 1.09000 * 109.47050 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46801 * 300.00442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3561 2.0371 -1.1959 5 6 2.8218 3.3354 -1.2024 6 6 2.9614 4.0296 0.0007 7 6 3.4594 5.4215 0.0013 8 8 3.5795 6.0237 1.0504 9 7 3.7803 6.0230 -1.1614 10 6 4.2733 7.4025 -1.1609 11 6 4.5607 7.8419 -2.5980 12 6 5.0762 9.2825 -2.5974 13 6 5.3586 9.7154 -4.0129 14 1 5.1872 9.0317 -4.8312 15 6 5.8350 10.9849 -4.2636 16 7 6.0432 11.8176 -3.2672 17 14 6.1857 11.5214 -6.0181 18 1 4.9377 11.4419 -6.8189 19 1 6.6859 12.9196 -6.0176 20 1 7.2130 10.6289 -6.6126 21 6 2.6276 3.4041 1.2029 22 6 2.1629 2.1050 1.1953 23 6 1.8026 1.4278 2.4925 24 6 2.9970 0.6116 2.9907 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 2.2484 1.4987 -2.1259 31 1 3.0783 3.8138 -2.1361 32 1 3.6842 5.5426 -1.9986 33 1 3.5192 8.0577 -0.7249 34 1 5.1892 7.4608 -0.5727 35 1 5.3146 7.1867 -3.0344 36 1 3.6446 7.7836 -3.1859 37 1 4.3225 9.9378 -2.1610 38 1 5.9923 9.3402 -2.0097 39 1 6.3787 12.7105 -3.4434 40 1 2.7329 3.9358 2.1369 41 1 0.9515 0.7659 2.3326 42 1 1.5423 2.1814 3.2356 43 1 3.8482 1.2736 3.1505 44 1 2.7363 0.1215 3.9287 45 1 3.2574 -0.1420 2.2474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337226503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -52.616116 kcal Electronic energy + Delta-G solvation = -21842.403245 eV Core-core repulsion = 18630.110251 eV Total energy + Delta-G solvation = -3212.292994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44450 -38.93193 -35.44394 -34.96055 -33.73860 -33.29048 -31.30080 -30.16330 -29.41299 -26.79009 -25.01527 -24.06041 -22.89610 -21.81906 -21.70143 -20.61819 -19.53342 -17.54466 -16.66163 -16.25137 -15.79840 -15.35378 -15.29829 -14.82703 -14.45998 -14.23455 -13.94640 -13.91545 -13.81723 -13.61207 -13.48814 -12.79673 -12.68988 -12.29609 -12.13204 -11.93387 -11.83900 -11.64956 -11.60242 -11.43438 -11.07647 -10.89271 -10.88631 -10.72045 -10.63003 -9.93362 -9.86856 -9.39190 -9.13257 -9.06367 -8.93132 -8.68406 -8.37009 -6.01714 -4.04936 0.70687 1.15467 2.85170 3.32020 3.35138 3.36955 3.39832 3.74056 4.35651 4.42522 4.44186 4.57626 4.66039 4.77302 4.93342 4.97034 5.00137 5.07945 5.15006 5.27249 5.31555 5.33865 5.44137 5.51525 5.58763 5.65517 5.69950 5.75541 5.77591 5.81575 5.86786 5.98878 6.12494 6.15917 6.21755 6.36757 6.47009 6.59367 6.69061 6.83264 6.99599 7.63134 7.69962 7.75984 7.96836 8.35360 8.39444 9.01442 9.59073 11.09556 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.002378 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.327891 B =11771.865196 C =12413.674354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.130 4.130 7 C 0.551 3.449 8 O -0.542 6.542 9 N -0.720 5.720 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.057 4.057 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.135 0.865 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 -26.562 7.992 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.134 4.134 7 C 0.337 3.663 8 O -0.421 6.421 9 N -0.371 5.371 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.076 4.076 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.206 4.206 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.062 -25.904 8.777 29.143 hybrid contribution 0.248 0.308 -1.514 1.564 sum -9.814 -25.596 7.263 28.359 Atomic orbital electron populations 1.21768 0.94523 1.01805 1.02461 1.20659 0.96373 0.92599 1.03192 1.19924 0.97399 0.96060 0.92601 1.20947 1.00579 0.94910 0.97690 1.21320 0.97559 0.94646 0.97155 1.20026 1.04329 0.94566 0.94430 1.18301 0.77869 0.85952 0.84130 1.90763 1.53994 1.65965 1.31343 1.46143 1.66278 1.16222 1.08471 1.21683 0.99195 0.79897 0.99869 1.21899 1.00616 1.01111 0.92283 1.19024 0.96468 0.88522 0.97344 1.21163 1.43930 0.98355 0.92699 0.92701 1.25037 0.95611 0.96749 0.97090 1.69956 1.45513 1.06932 1.30861 0.86631 0.78642 0.77625 0.84936 1.20243 1.21267 1.20247 1.21152 0.94958 0.93595 0.97845 1.19692 1.00460 0.93931 0.94919 1.20602 0.98787 0.99371 0.93725 1.21780 0.98035 0.99982 1.00802 0.92290 0.92324 0.92397 0.90914 0.90421 0.85510 0.85492 0.76782 0.91603 0.91594 0.92703 0.92699 0.96247 0.96240 0.92858 0.84744 0.90557 0.90827 0.92318 0.92305 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.72 37.16 0.36 -0.48 16 2 C -0.09 -0.57 5.38 -27.88 -0.15 -0.72 16 3 C -0.06 -0.52 5.14 -104.53 -0.54 -1.05 16 4 C -0.12 -1.10 9.66 -39.64 -0.38 -1.48 16 5 C -0.09 -0.92 9.54 -39.19 -0.37 -1.29 16 6 C -0.13 -1.69 5.87 -104.97 -0.62 -2.31 16 7 C 0.55 8.88 7.77 -12.33 -0.10 8.79 16 8 O -0.54 -10.72 16.35 5.32 0.09 -10.63 16 9 N -0.72 -10.93 5.51 -61.25 -0.34 -11.26 16 10 C 0.12 2.10 5.67 -4.04 -0.02 2.08 16 11 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.62 5.46 -17.81 -0.10 1.53 16 16 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.06 -0.68 9.22 -39.18 -0.36 -1.04 16 22 C -0.09 -0.86 5.13 -104.68 -0.54 -1.40 16 23 C -0.09 -0.64 5.38 -27.88 -0.15 -0.79 16 24 C -0.15 -0.99 9.72 37.16 0.36 -0.63 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.35 6.78 -51.93 -0.35 0.00 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.39 8.05 -51.93 -0.42 -0.02 16 29 H 0.08 0.44 5.57 -51.93 -0.29 0.15 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.09 6.41 -52.48 -0.34 0.76 16 32 H 0.40 4.87 6.51 -40.82 -0.27 4.60 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 1.68 7.65 -52.49 -0.40 1.27 16 41 H 0.08 0.47 5.61 -51.93 -0.29 0.18 16 42 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.36 6.76 -51.93 -0.35 0.01 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -32.64 365.91 -9.53 -42.17 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.31 Total: -0.28 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -3.20 Total: -15.85 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.46 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.64 -9.53 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337226503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.446 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds