Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47092 * 2 1 4 4 C 1.38378 * 119.86018 * 265.23372 * 3 2 1 5 5 C 1.37928 * 120.14925 * 180.27782 * 4 3 2 6 6 C 1.39600 * 119.85408 * 359.74693 * 5 4 3 7 7 C 1.47839 * 120.14733 * 180.02562 * 6 5 4 8 8 O 1.21556 * 119.99905 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00225 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00211 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.46809 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00479 * 0.02562 * 13 12 11 15 15 C 1.37888 * 120.00117 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99513 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00344 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47084 * 60.00113 * 17 15 13 19 19 H 1.48497 * 109.47074 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47012 * 300.00355 * 17 15 13 21 21 C 1.39563 * 119.70863 * 359.97438 * 6 5 4 22 22 C 1.37983 * 119.85128 * 0.02562 * 21 6 5 23 23 C 1.50698 * 119.92312 * 179.97438 * 22 21 6 24 24 C 1.53006 * 109.47184 * 264.99735 * 23 22 21 25 25 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46924 * 299.99562 * 1 2 3 27 27 H 1.08997 * 109.46725 * 59.99739 * 1 2 3 28 28 H 1.09006 * 109.46567 * 240.00241 * 2 1 3 29 29 H 1.08997 * 109.46725 * 120.00261 * 2 1 3 30 30 H 1.08000 * 119.92143 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.07723 * 179.72102 * 5 4 3 32 32 H 0.97001 * 119.99795 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47433 * 299.99986 * 10 9 7 34 34 H 1.08999 * 109.47306 * 60.00288 * 10 9 7 35 35 H 1.08992 * 109.47112 * 300.00311 * 11 10 9 36 36 H 1.09007 * 109.47085 * 60.00212 * 11 10 9 37 37 H 1.08998 * 109.46848 * 299.99609 * 12 11 10 38 38 H 1.08994 * 109.46933 * 59.99937 * 12 11 10 39 39 H 0.96996 * 119.99962 * 179.97438 * 16 15 13 40 40 H 1.07991 * 120.07331 * 180.02562 * 21 6 5 41 41 H 1.09001 * 109.46665 * 145.00124 * 23 22 21 42 42 H 1.08993 * 109.47304 * 24.99680 * 23 22 21 43 43 H 1.09001 * 109.46998 * 60.00038 * 24 23 22 44 44 H 1.09000 * 109.47050 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46801 * 300.00442 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3561 2.0371 -1.1959 5 6 2.8218 3.3354 -1.2024 6 6 2.9614 4.0296 0.0007 7 6 3.4594 5.4215 0.0013 8 8 3.5795 6.0237 1.0504 9 7 3.7803 6.0230 -1.1614 10 6 4.2733 7.4025 -1.1609 11 6 4.5607 7.8419 -2.5980 12 6 5.0762 9.2825 -2.5974 13 6 5.3586 9.7154 -4.0129 14 1 5.1872 9.0317 -4.8312 15 6 5.8350 10.9849 -4.2636 16 7 6.0432 11.8176 -3.2672 17 14 6.1857 11.5214 -6.0181 18 1 4.9377 11.4419 -6.8189 19 1 6.6859 12.9196 -6.0176 20 1 7.2130 10.6289 -6.6126 21 6 2.6276 3.4041 1.2029 22 6 2.1629 2.1050 1.1953 23 6 1.8026 1.4278 2.4925 24 6 2.9970 0.6116 2.9907 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 2.2484 1.4987 -2.1259 31 1 3.0783 3.8138 -2.1361 32 1 3.6842 5.5426 -1.9986 33 1 3.5192 8.0577 -0.7249 34 1 5.1892 7.4608 -0.5727 35 1 5.3146 7.1867 -3.0344 36 1 3.6446 7.7836 -3.1859 37 1 4.3225 9.9378 -2.1610 38 1 5.9923 9.3402 -2.0097 39 1 6.3787 12.7105 -3.4434 40 1 2.7329 3.9358 2.1369 41 1 0.9515 0.7659 2.3326 42 1 1.5423 2.1814 3.2356 43 1 3.8482 1.2736 3.1505 44 1 2.7363 0.1215 3.9287 45 1 3.2574 -0.1420 2.2474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337226503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -70.918483 kcal Electronic energy + Delta-G solvation = -21843.196895 eV Core-core repulsion = 18630.110251 eV Total energy + Delta-G solvation = -3213.086644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42097 -40.00988 -37.03766 -35.75644 -35.16693 -34.33261 -33.06951 -30.90243 -30.28893 -28.50264 -25.92244 -25.15740 -24.16244 -22.71057 -22.49238 -22.28941 -20.65376 -18.75510 -18.36155 -17.46905 -16.76319 -16.61570 -16.48901 -16.32267 -15.73443 -15.47912 -14.81059 -14.74837 -14.61166 -14.47298 -14.23097 -14.13928 -13.78780 -13.61772 -13.43306 -13.21617 -12.79050 -12.72990 -12.57408 -12.50045 -12.42864 -12.12417 -12.04355 -11.74453 -11.69950 -11.57935 -11.45509 -11.28086 -10.95167 -10.55564 -10.24770 -9.83483 -9.58080 -8.19971 -6.31796 -0.18061 0.37689 1.41366 1.44691 1.52533 1.77986 2.10097 2.42240 2.81237 3.13588 3.61789 3.71529 3.85344 3.95118 4.10302 4.13461 4.17245 4.21148 4.42403 4.47619 4.50938 4.53716 4.54555 4.59679 4.77519 4.86317 4.90575 4.93729 5.01158 5.06543 5.09090 5.12133 5.14107 5.22709 5.31180 5.34857 5.37089 5.46362 5.50194 5.50636 5.65971 5.68418 5.82666 5.95116 6.20854 6.48627 6.85317 7.12962 7.37722 8.92035 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.002378 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.327891 B =11771.865196 C =12413.674354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.122 4.122 5 C -0.087 4.087 6 C -0.155 4.155 7 C 0.549 3.451 8 O -0.589 6.589 9 N -0.709 5.709 10 C 0.129 3.871 11 C -0.101 4.101 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.074 4.074 22 C -0.092 4.092 23 C -0.087 4.087 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.414 0.586 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -29.664 5.839 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.053 4.053 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.158 4.158 7 C 0.338 3.662 8 O -0.471 6.471 9 N -0.360 5.360 10 C 0.005 3.995 11 C -0.139 4.139 12 C -0.014 4.014 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.093 4.093 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.204 4.204 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.175 0.825 31 H 0.163 0.837 32 H 0.252 0.748 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.964 -29.047 6.594 31.740 hybrid contribution 0.488 1.195 -0.788 1.512 sum -10.477 -27.852 5.806 30.319 Atomic orbital electron populations 1.21767 0.93950 1.02726 1.02053 1.20743 0.96699 0.90783 1.04459 1.20325 0.95691 0.97262 0.92049 1.21321 0.99342 0.94286 0.99032 1.21528 0.97072 0.95276 0.96656 1.19829 1.06887 0.92995 0.96044 1.18862 0.76871 0.87116 0.83365 1.90730 1.56085 1.67372 1.32947 1.45890 1.65840 1.14976 1.09323 1.21291 0.98217 0.81462 0.98532 1.21606 1.01372 0.97529 0.93398 1.18940 0.94637 0.91806 0.96035 1.21646 1.43605 0.98874 0.93849 0.91427 1.26056 0.95339 0.96928 1.01904 1.70110 1.46563 1.07384 1.33511 0.85442 0.79024 0.77117 0.79112 1.18956 1.21195 1.18968 1.21166 0.96264 0.94847 0.97041 1.19920 0.99770 0.92984 0.96545 1.20660 0.99684 0.99512 0.92581 1.21769 0.97084 0.99728 1.01795 0.90739 0.92817 0.92784 0.89371 0.89524 0.82533 0.83710 0.74779 0.93110 0.93103 0.91198 0.91193 0.98982 0.98971 0.92799 0.86526 0.88792 0.91299 0.93899 0.90799 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.72 71.98 0.70 -0.50 16 2 C -0.09 -0.80 5.38 29.85 0.16 -0.64 16 3 C -0.05 -0.78 5.14 -19.81 -0.10 -0.89 16 4 C -0.12 -1.81 9.66 22.23 0.21 -1.60 16 5 C -0.09 -1.64 9.54 22.52 0.21 -1.43 16 6 C -0.15 -4.02 5.87 -20.09 -0.12 -4.14 16 7 C 0.55 18.27 7.77 86.78 0.67 18.95 16 8 O -0.59 -24.73 16.35 -3.89 -0.06 -24.80 16 9 N -0.71 -21.48 5.51 -465.98 -2.57 -24.04 16 10 C 0.13 4.79 5.67 86.38 0.49 5.28 16 11 C -0.10 -3.98 5.27 30.60 0.16 -3.81 16 12 C 0.02 1.24 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 16 N -0.94 -57.66 13.29 21.45 0.28 -57.37 16 17 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 21 C -0.07 -1.83 9.22 22.53 0.21 -1.63 16 22 C -0.09 -1.68 5.13 -19.90 -0.10 -1.78 16 23 C -0.09 -1.17 5.38 29.85 0.16 -1.01 16 24 C -0.15 -1.74 9.72 71.98 0.70 -1.04 16 25 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.05 0.49 6.78 -2.39 -0.02 0.48 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.57 8.05 -2.38 -0.02 0.55 16 29 H 0.09 0.65 5.57 -2.39 -0.01 0.64 16 30 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.15 2.11 6.41 -2.91 -0.02 2.09 16 32 H 0.41 9.55 6.51 -92.71 -0.60 8.94 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 40 H 0.12 3.19 7.65 -2.92 -0.02 3.17 16 41 H 0.09 0.93 5.61 -2.39 -0.01 0.92 16 42 H 0.07 0.99 8.05 -2.39 -0.02 0.97 16 43 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 0.66 6.76 -2.39 -0.02 0.65 16 Total: -1.00 -72.89 365.91 4.26 -68.63 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.37 Total: 14.46 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.21 Total: -22.85 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.28 Total: -81.42 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.89 4.26 -68.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337226503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.288 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds