Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47214 * 2 1 4 4 C 1.38384 * 119.85051 * 264.99808 * 3 2 1 5 5 C 1.37943 * 120.13903 * 180.02562 * 4 3 2 6 6 C 1.39591 * 119.85496 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.14368 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00256 * 221.41711 * 7 6 5 9 9 N 1.34777 * 119.99601 * 41.42374 * 7 6 5 10 10 C 1.46498 * 120.00483 * 355.46786 * 9 7 6 11 11 C 1.46498 * 119.99717 * 175.47776 * 9 7 6 12 12 H 1.09001 * 109.47320 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47634 * 119.99344 * 11 9 7 14 14 C 1.50707 * 109.46717 * 239.99619 * 11 9 7 15 15 H 1.07997 * 120.00019 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99849 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99809 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 119.99990 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47400 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46914 * 300.00107 * 18 16 14 21 21 H 1.48504 * 109.47081 * 59.99723 * 18 16 14 22 22 C 1.39561 * 119.71457 * 0.24759 * 6 5 4 23 23 C 1.37976 * 119.84941 * 359.51848 * 22 6 5 24 24 C 1.50696 * 119.92827 * 180.23249 * 23 22 6 25 25 C 1.53009 * 109.47091 * 265.25338 * 24 23 22 26 26 H 1.08996 * 109.46971 * 59.99799 * 1 2 3 27 27 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46498 * 300.00096 * 1 2 3 29 29 H 1.08998 * 109.46979 * 239.99687 * 2 1 3 30 30 H 1.08996 * 109.46971 * 120.00201 * 2 1 3 31 31 H 1.07994 * 119.93103 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07090 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47324 * 275.17733 * 10 9 7 34 34 H 1.09006 * 109.46781 * 35.17441 * 10 9 7 35 35 H 1.08989 * 109.47141 * 155.17055 * 10 9 7 36 36 H 1.09007 * 109.46519 * 59.99831 * 13 11 9 37 37 H 1.09002 * 109.47074 * 179.97438 * 13 11 9 38 38 H 1.08994 * 109.47411 * 300.00050 * 13 11 9 39 39 H 0.97000 * 119.99446 * 180.02562 * 17 16 14 40 40 H 1.07991 * 120.07513 * 179.74765 * 22 6 5 41 41 H 1.08995 * 109.47256 * 25.24990 * 24 23 22 42 42 H 1.08998 * 109.47414 * 145.25616 * 24 23 22 43 43 H 1.08992 * 109.47288 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46754 * 300.00297 * 25 24 23 45 45 H 1.08998 * 109.46764 * 59.99880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0353 -1.1957 5 6 2.8216 3.3354 -1.2025 6 6 2.9560 4.0314 0.0000 7 6 3.4499 5.4249 0.0001 8 8 4.2416 5.7892 0.8475 9 7 3.0222 6.2915 -0.9394 10 6 2.1463 5.8286 -2.0186 11 6 3.4335 7.6964 -0.8816 12 1 4.0782 7.8509 -0.0164 13 6 4.1965 8.0575 -2.1576 14 6 2.2131 8.5724 -0.7610 15 1 1.2297 8.1272 -0.7310 16 6 2.3522 9.9423 -0.6891 17 7 3.5500 10.4844 -0.7252 18 14 0.8396 11.0282 -0.5404 19 1 1.2563 12.4522 -0.4817 20 1 -0.0383 10.8181 -1.7196 21 1 0.0982 10.6773 0.6975 22 6 2.6276 3.4042 1.2027 23 6 2.1631 2.1050 1.1952 24 6 1.8030 1.4278 2.4924 25 6 2.9998 0.6170 2.9939 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.2558 1.4959 -2.1253 32 1 3.0778 3.8138 -2.1363 33 1 2.7511 5.4116 -2.8239 34 1 1.4725 5.0619 -1.6360 35 1 1.5636 6.6675 -2.3987 36 1 3.5515 7.9030 -3.0226 37 1 4.5021 9.1029 -2.1147 38 1 5.0791 7.4239 -2.2448 39 1 3.6478 11.4481 -0.6742 40 1 2.7333 3.9358 2.1367 41 1 1.5382 2.1812 3.2343 42 1 0.9550 0.7622 2.3317 43 1 2.7395 0.1276 3.9323 44 1 3.2647 -0.1364 2.2520 45 1 3.8478 1.2826 3.1546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341763893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = -25.826920 kcal Electronic energy + Delta-G solvation = -23297.728580 eV Core-core repulsion = 20086.597253 eV Total energy + Delta-G solvation = -3211.131327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15177 -38.53586 -35.34470 -34.71578 -33.48625 -32.75765 -30.05901 -29.77210 -28.49979 -26.25781 -25.22178 -24.65495 -23.75960 -21.85303 -21.49060 -20.29121 -18.51876 -16.66509 -16.30558 -16.15740 -15.73763 -15.34220 -14.61896 -14.39036 -14.17342 -13.89020 -13.72607 -13.52606 -13.30948 -13.08651 -12.60157 -12.53642 -12.46200 -12.25715 -11.88446 -11.76262 -11.48190 -11.43458 -11.23976 -11.18648 -11.05136 -10.85131 -10.79081 -10.70364 -10.54217 -10.25478 -10.16493 -9.20274 -9.01351 -8.70763 -8.45355 -8.38909 -7.58632 -6.06975 -4.15194 1.17611 1.47957 3.28135 3.31263 3.33442 3.36555 3.83741 4.10771 4.39969 4.62305 4.73420 4.84408 4.88901 5.06417 5.17537 5.20587 5.24373 5.27631 5.30780 5.45490 5.53043 5.57268 5.66732 5.70532 5.79250 5.84911 5.90377 5.97120 6.01123 6.05745 6.17064 6.21293 6.39289 6.45775 6.58612 6.66859 6.77158 6.85022 7.03160 7.07658 7.43600 7.53999 7.71877 8.02261 8.19747 8.52175 8.82592 9.04252 9.51194 10.98377 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.003751 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.528481 B = 7461.992730 C = 7496.184921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.071 4.071 4 C -0.125 4.125 5 C -0.096 4.096 6 C -0.114 4.114 7 C 0.544 3.456 8 O -0.549 6.549 9 N -0.584 5.584 10 C 0.080 3.920 11 C 0.258 3.742 12 H 0.064 0.936 13 C -0.146 4.146 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.286 1.286 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.066 4.066 23 C -0.089 4.089 24 C -0.086 4.086 25 C -0.148 4.148 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -20.389 -0.301 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.114 4.114 6 C -0.117 4.117 7 C 0.331 3.669 8 O -0.428 6.428 9 N -0.314 5.314 10 C -0.063 4.063 11 C 0.158 3.842 12 H 0.081 0.919 13 C -0.204 4.204 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.084 4.084 23 C -0.089 4.089 24 C -0.123 4.123 25 C -0.205 4.205 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.607 -19.956 0.127 20.481 hybrid contribution -0.833 0.763 -0.128 1.137 sum -5.441 -19.193 -0.001 19.949 Atomic orbital electron populations 1.21764 0.94768 1.01511 1.02448 1.20605 0.96188 0.92857 1.02839 1.19810 0.98695 0.95924 0.92667 1.20905 1.01095 0.94881 0.97393 1.21578 0.97681 0.94433 0.97733 1.20169 1.02107 0.95259 0.94145 1.18313 0.81847 0.84681 0.82051 1.90729 1.34987 1.78544 1.38560 1.48169 1.46878 1.11371 1.25023 1.21855 0.93921 1.00582 0.89973 1.18975 0.95387 0.73709 0.96166 0.91857 1.22082 0.97020 1.03542 0.97788 1.21290 0.92664 0.91164 1.51495 0.92259 1.24892 0.96159 0.97845 0.94825 1.69876 1.21437 1.11548 1.49685 0.86543 0.82786 0.79310 0.78680 1.21144 1.20213 1.20233 1.21061 0.96174 0.93732 0.97479 1.19610 1.00676 0.93926 0.94720 1.20575 0.98583 0.99264 0.93915 1.21771 0.98176 1.00001 1.00563 0.92439 0.92546 0.92369 0.91199 0.90679 0.85923 0.84918 0.93838 0.92297 0.90020 0.95147 0.88787 0.96958 0.92603 0.85416 0.90999 0.90748 0.92514 0.92564 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.72 37.16 0.36 -0.79 16 2 C -0.09 -0.75 5.37 -27.88 -0.15 -0.90 16 3 C -0.07 -0.81 5.14 -104.53 -0.54 -1.35 16 4 C -0.12 -1.49 9.66 -39.64 -0.38 -1.87 16 5 C -0.10 -1.38 7.62 -39.19 -0.30 -1.68 16 6 C -0.11 -2.00 5.16 -104.97 -0.54 -2.54 16 7 C 0.54 12.10 7.33 -12.33 -0.09 12.01 16 8 O -0.55 -14.31 16.28 5.32 0.09 -14.23 16 9 N -0.58 -12.98 2.75 -176.38 -0.49 -13.47 16 10 C 0.08 1.41 7.87 59.85 0.47 1.88 16 11 C 0.26 6.73 2.63 -69.08 -0.18 6.55 16 12 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 13 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 14 C -0.53 -14.42 7.96 -34.43 -0.27 -14.69 16 15 H 0.06 1.59 7.42 -52.49 -0.39 1.20 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 18 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.07 -1.05 9.28 -39.18 -0.36 -1.41 16 23 C -0.09 -1.14 5.13 -104.68 -0.54 -1.67 16 24 C -0.09 -0.87 5.37 -27.88 -0.15 -1.02 16 25 C -0.15 -1.35 9.72 37.16 0.36 -0.99 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 29 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 30 H 0.07 0.59 5.59 -51.93 -0.29 0.30 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.79 5.52 -52.49 -0.29 1.50 16 33 H 0.04 0.66 6.85 -51.93 -0.36 0.30 16 34 H 0.06 0.92 5.99 -51.93 -0.31 0.61 16 35 H 0.08 1.51 7.10 -51.94 -0.37 1.14 16 36 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 42 H 0.07 0.64 5.59 -51.93 -0.29 0.35 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -31.38 352.96 -8.55 -39.93 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.00 Total: 0.98 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.07 Total: -9.99 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.14 Total: -38.13 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.38 -8.55 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341763893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.099 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds