Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47214 * 2 1 4 4 C 1.38384 * 119.85051 * 264.99808 * 3 2 1 5 5 C 1.37943 * 120.13903 * 180.02562 * 4 3 2 6 6 C 1.39591 * 119.85496 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.14368 * 179.97438 * 6 5 4 8 8 O 1.21553 * 120.00256 * 221.41711 * 7 6 5 9 9 N 1.34777 * 119.99601 * 41.42374 * 7 6 5 10 10 C 1.46498 * 120.00483 * 355.46786 * 9 7 6 11 11 C 1.46498 * 119.99717 * 175.47776 * 9 7 6 12 12 H 1.09001 * 109.47320 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.47634 * 119.99344 * 11 9 7 14 14 C 1.50707 * 109.46717 * 239.99619 * 11 9 7 15 15 H 1.07997 * 120.00019 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99849 * 179.97438 * 14 11 9 17 17 N 1.31519 * 119.99809 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 119.99990 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47400 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46914 * 300.00107 * 18 16 14 21 21 H 1.48504 * 109.47081 * 59.99723 * 18 16 14 22 22 C 1.39561 * 119.71457 * 0.24759 * 6 5 4 23 23 C 1.37976 * 119.84941 * 359.51848 * 22 6 5 24 24 C 1.50696 * 119.92827 * 180.23249 * 23 22 6 25 25 C 1.53009 * 109.47091 * 265.25338 * 24 23 22 26 26 H 1.08996 * 109.46971 * 59.99799 * 1 2 3 27 27 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46498 * 300.00096 * 1 2 3 29 29 H 1.08998 * 109.46979 * 239.99687 * 2 1 3 30 30 H 1.08996 * 109.46971 * 120.00201 * 2 1 3 31 31 H 1.07994 * 119.93103 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.07090 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47324 * 275.17733 * 10 9 7 34 34 H 1.09006 * 109.46781 * 35.17441 * 10 9 7 35 35 H 1.08989 * 109.47141 * 155.17055 * 10 9 7 36 36 H 1.09007 * 109.46519 * 59.99831 * 13 11 9 37 37 H 1.09002 * 109.47074 * 179.97438 * 13 11 9 38 38 H 1.08994 * 109.47411 * 300.00050 * 13 11 9 39 39 H 0.97000 * 119.99446 * 180.02562 * 17 16 14 40 40 H 1.07991 * 120.07513 * 179.74765 * 22 6 5 41 41 H 1.08995 * 109.47256 * 25.24990 * 24 23 22 42 42 H 1.08998 * 109.47414 * 145.25616 * 24 23 22 43 43 H 1.08992 * 109.47288 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46754 * 300.00297 * 25 24 23 45 45 H 1.08998 * 109.46764 * 59.99880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0353 -1.1957 5 6 2.8216 3.3354 -1.2025 6 6 2.9560 4.0314 0.0000 7 6 3.4499 5.4249 0.0001 8 8 4.2416 5.7892 0.8475 9 7 3.0222 6.2915 -0.9394 10 6 2.1463 5.8286 -2.0186 11 6 3.4335 7.6964 -0.8816 12 1 4.0782 7.8509 -0.0164 13 6 4.1965 8.0575 -2.1576 14 6 2.2131 8.5724 -0.7610 15 1 1.2297 8.1272 -0.7310 16 6 2.3522 9.9423 -0.6891 17 7 3.5500 10.4844 -0.7252 18 14 0.8396 11.0282 -0.5404 19 1 1.2563 12.4522 -0.4817 20 1 -0.0383 10.8181 -1.7196 21 1 0.0982 10.6773 0.6975 22 6 2.6276 3.4042 1.2027 23 6 2.1631 2.1050 1.1952 24 6 1.8030 1.4278 2.4924 25 6 2.9998 0.6170 2.9939 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 2.2558 1.4959 -2.1253 32 1 3.0778 3.8138 -2.1363 33 1 2.7511 5.4116 -2.8239 34 1 1.4725 5.0619 -1.6360 35 1 1.5636 6.6675 -2.3987 36 1 3.5515 7.9030 -3.0226 37 1 4.5021 9.1029 -2.1147 38 1 5.0791 7.4239 -2.2448 39 1 3.6478 11.4481 -0.6742 40 1 2.7333 3.9358 2.1367 41 1 1.5382 2.1812 3.2343 42 1 0.9550 0.7622 2.3317 43 1 2.7395 0.1276 3.9323 44 1 3.2647 -0.1364 2.2520 45 1 3.8478 1.2826 3.1546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341763893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = -42.851178 kcal Electronic energy + Delta-G solvation = -23298.466807 eV Core-core repulsion = 20086.597253 eV Total energy + Delta-G solvation = -3211.869554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46464 -39.96830 -37.22632 -35.82869 -34.64859 -34.31184 -31.68745 -30.83407 -29.74002 -27.79365 -27.33678 -25.65506 -24.81435 -23.18785 -22.46554 -21.66985 -20.10453 -18.53152 -17.91473 -17.53855 -16.99232 -16.72470 -16.26992 -15.89117 -15.40486 -14.82140 -14.73212 -14.65086 -14.50847 -14.29532 -14.09231 -13.96790 -13.60024 -13.45778 -13.32554 -13.01027 -12.91801 -12.83565 -12.72963 -12.53903 -12.39798 -12.21119 -12.14675 -12.09382 -12.00756 -11.65004 -11.41594 -11.25347 -10.75665 -10.53171 -9.81330 -9.52562 -9.36710 -8.17478 -6.34824 0.01287 0.41327 1.39889 1.42674 1.50274 1.79916 2.26252 2.45066 2.79274 3.10329 3.60150 3.76906 3.88205 3.95554 4.15489 4.23992 4.37313 4.46176 4.49267 4.57542 4.58551 4.62081 4.66373 4.71123 4.79208 4.85183 4.91391 4.96448 5.02289 5.03885 5.07563 5.13592 5.14508 5.25393 5.36486 5.41132 5.42351 5.47860 5.53510 5.58871 5.62962 5.70058 5.99008 6.02104 6.11933 6.71589 6.73151 7.23445 7.40485 8.87191 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.003751 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.528481 B = 7461.992730 C = 7496.184921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.116 4.116 5 C -0.095 4.095 6 C -0.142 4.142 7 C 0.535 3.465 8 O -0.606 6.606 9 N -0.591 5.591 10 C 0.080 3.920 11 C 0.261 3.739 12 H 0.006 0.994 13 C -0.131 4.131 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.282 1.282 20 H -0.260 1.260 21 H -0.278 1.278 22 C -0.086 4.086 23 C -0.087 4.087 24 C -0.086 4.086 25 C -0.145 4.145 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -23.519 -1.869 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.060 4.060 4 C -0.133 4.133 5 C -0.113 4.113 6 C -0.145 4.145 7 C 0.325 3.675 8 O -0.490 6.490 9 N -0.319 5.319 10 C -0.062 4.062 11 C 0.159 3.841 12 H 0.024 0.976 13 C -0.189 4.189 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.792 3.208 19 H -0.207 1.207 20 H -0.185 1.185 21 H -0.204 1.204 22 C -0.105 4.105 23 C -0.087 4.087 24 C -0.123 4.123 25 C -0.203 4.203 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.985 -23.115 -1.475 24.192 hybrid contribution -0.092 1.623 0.395 1.673 sum -7.077 -21.492 -1.080 22.653 Atomic orbital electron populations 1.21765 0.93929 1.02695 1.02044 1.20710 0.96708 0.90482 1.04416 1.20284 0.96496 0.97404 0.91823 1.21308 0.99198 0.93716 0.99119 1.21672 0.97656 0.95451 0.96568 1.19844 1.05436 0.92881 0.96293 1.19142 0.80915 0.86600 0.80874 1.90674 1.37570 1.80091 1.40672 1.48165 1.47423 1.09956 1.26388 1.22090 0.93970 1.00832 0.89349 1.18602 0.94562 0.76251 0.94701 0.97557 1.21865 0.97389 1.02055 0.97610 1.21524 0.92892 0.91820 1.51836 0.92158 1.25761 0.99167 0.99196 0.94247 1.70024 1.23533 1.11865 1.50149 0.85472 0.79096 0.77293 0.78943 1.20683 1.18477 1.20355 1.21036 0.97933 0.95342 0.96195 1.19876 0.99550 0.92545 0.96778 1.20652 0.99763 0.99436 0.92449 1.21760 0.96948 0.99697 1.01857 0.92707 0.90618 0.92997 0.89251 0.89610 0.82194 0.83969 0.90768 0.90108 0.90895 0.93158 0.91177 0.96240 0.92504 0.87726 0.91690 0.88454 0.90597 0.91522 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.72 71.98 0.70 -0.93 16 2 C -0.09 -1.06 5.37 29.85 0.16 -0.90 16 3 C -0.06 -1.18 5.14 -19.81 -0.10 -1.28 16 4 C -0.12 -2.34 9.66 22.23 0.21 -2.12 16 5 C -0.10 -2.57 7.62 22.53 0.17 -2.40 16 6 C -0.14 -5.09 5.16 -20.09 -0.10 -5.19 16 7 C 0.53 25.18 7.33 86.79 0.64 25.82 16 8 O -0.61 -34.43 16.28 -3.88 -0.06 -34.50 16 9 N -0.59 -27.13 2.75 -830.21 -2.29 -29.42 16 10 C 0.08 2.71 7.87 127.77 1.01 3.72 16 11 C 0.26 14.29 2.63 44.25 0.12 14.41 16 12 H 0.01 0.42 6.91 -2.39 -0.02 0.41 16 13 C -0.13 -6.55 8.97 71.98 0.65 -5.90 16 14 C -0.54 -30.49 7.96 25.60 0.20 -30.29 16 15 H 0.06 3.29 7.42 -2.91 -0.02 3.27 16 16 C 0.02 0.90 5.30 84.66 0.45 1.35 16 17 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 18 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C -0.09 -2.84 9.28 22.53 0.21 -2.63 16 23 C -0.09 -2.12 5.13 -19.90 -0.10 -2.22 16 24 C -0.09 -1.58 5.37 29.85 0.16 -1.42 16 25 C -0.15 -2.38 9.72 71.99 0.70 -1.68 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.65 6.79 -2.39 -0.02 0.63 16 29 H 0.09 0.83 8.05 -2.39 -0.02 0.81 16 30 H 0.09 0.93 5.59 -2.39 -0.01 0.92 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 3.48 5.52 -2.91 -0.02 3.46 16 33 H 0.07 2.07 6.85 -2.39 -0.02 2.06 16 34 H 0.08 2.40 5.99 -2.38 -0.01 2.39 16 35 H 0.07 2.62 7.10 -2.39 -0.02 2.60 16 36 H 0.05 2.26 7.67 -2.38 -0.02 2.24 16 37 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.10 3.80 8.06 -2.92 -0.02 3.78 16 41 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 42 H 0.10 1.36 5.59 -2.39 -0.01 1.35 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.95 6.79 -2.39 -0.02 0.93 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.62 352.96 5.96 -67.66 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.97 Total: 15.91 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.06 Total: -11.68 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.04 Total: -83.15 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.06 Total: -34.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.62 5.96 -67.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341763893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.806 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds