Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47063 * 2 1 4 4 C 1.38376 * 119.85287 * 265.01995 * 3 2 1 5 5 C 1.37941 * 120.14727 * 179.71758 * 4 3 2 6 6 C 1.39595 * 119.84884 * 0.49092 * 5 4 3 7 7 C 1.47846 * 120.14579 * 179.78725 * 6 5 4 8 8 O 1.21553 * 120.00154 * 179.72365 * 7 6 5 9 9 N 1.34777 * 119.99557 * 359.72064 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72375 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.50706 * 109.47303 * 205.27741 * 10 9 7 13 13 H 1.07998 * 119.99769 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00286 * 179.97438 * 12 10 9 15 15 N 1.31511 * 120.00035 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 119.99998 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.46865 * 89.99417 * 16 14 12 18 18 H 1.48498 * 109.47233 * 209.99802 * 16 14 12 19 19 H 1.48508 * 109.47028 * 329.99943 * 16 14 12 20 20 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 21 21 C 1.52996 * 109.47000 * 295.00080 * 20 10 9 22 22 C 1.39560 * 119.70992 * 359.51317 * 6 5 4 23 23 C 1.37971 * 119.85614 * 0.24900 * 22 6 5 24 24 C 1.50699 * 119.93119 * 179.97438 * 23 22 6 25 25 C 1.52995 * 109.47654 * 265.00392 * 24 23 22 26 26 H 1.08994 * 109.47382 * 300.00369 * 1 2 3 27 27 H 1.09004 * 109.47073 * 60.00110 * 1 2 3 28 28 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47539 * 240.00156 * 2 1 3 30 30 H 1.08997 * 109.47385 * 119.99649 * 2 1 3 31 31 H 1.08007 * 119.93162 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.07567 * 180.27375 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 0.97000 * 120.00229 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47148 * 54.99854 * 20 10 9 36 36 H 1.08994 * 109.47221 * 175.00107 * 20 10 9 37 37 H 1.09003 * 109.47322 * 59.99862 * 21 20 10 38 38 H 1.09004 * 109.47177 * 179.97438 * 21 20 10 39 39 H 1.09002 * 109.46986 * 299.99873 * 21 20 10 40 40 H 1.08008 * 120.06919 * 180.23053 * 22 6 5 41 41 H 1.08998 * 109.46526 * 25.00665 * 24 23 22 42 42 H 1.09003 * 109.46921 * 145.00236 * 24 23 22 43 43 H 1.08994 * 109.47346 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47218 * 300.00278 * 25 24 23 45 45 H 1.09010 * 109.46778 * 59.99686 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3601 2.0356 -1.1956 5 6 2.8150 3.3378 -1.2032 6 6 2.9540 4.0322 -0.0002 7 6 3.4454 5.4266 -0.0003 8 8 3.5607 6.0305 1.0483 9 7 3.7656 6.0281 -1.1631 10 6 4.2467 7.4118 -1.1638 11 1 3.7439 7.9718 -0.3753 12 6 3.9498 8.0463 -2.4981 13 1 3.4521 7.4760 -3.2684 14 6 4.3126 9.3552 -2.7352 15 7 4.0540 9.9087 -3.8997 16 14 5.1729 10.3419 -1.4026 17 1 6.6425 10.1718 -1.5315 18 1 4.8262 11.7785 -1.5485 19 1 4.7340 9.8598 -0.0683 20 6 5.7565 7.4270 -0.9167 21 6 6.0485 6.8976 0.4888 22 6 2.6216 3.4063 1.2021 23 6 2.1632 2.1050 1.1952 24 6 1.8044 1.4274 2.4926 25 6 3.0019 0.6175 2.9933 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2557 1.4960 -2.1254 32 1 3.0663 3.8179 -2.1374 33 1 3.6733 5.5464 -2.0000 34 1 4.3089 10.8297 -4.0664 35 1 6.2517 6.7943 -1.6533 36 1 6.1290 8.4475 -1.0051 37 1 5.6760 5.8770 0.5773 38 1 7.1242 6.9079 0.6647 39 1 5.5534 7.5302 1.2255 40 1 2.7234 3.9394 2.1359 41 1 1.5392 2.1805 3.2345 42 1 0.9567 0.7611 2.3321 43 1 2.7425 0.1278 3.9318 44 1 3.2671 -0.1355 2.2513 45 1 3.8496 1.2839 3.1537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342572171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -34.697806 kcal Electronic energy + Delta-G solvation = -23153.792596 eV Core-core repulsion = 19942.276599 eV Total energy + Delta-G solvation = -3211.515997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17752 -38.72148 -35.38626 -34.70379 -33.54593 -32.37582 -31.54359 -29.91967 -29.16330 -27.42026 -24.84735 -23.81587 -22.63010 -21.82665 -21.57136 -20.26821 -19.33575 -17.63758 -16.37800 -16.27822 -15.54062 -15.44895 -14.88829 -14.57362 -14.19931 -13.94838 -13.75983 -13.73478 -13.36080 -13.34319 -12.98953 -12.65269 -12.54732 -12.37592 -12.00636 -11.90544 -11.77875 -11.51073 -11.46196 -11.24356 -11.08189 -10.90562 -10.85116 -10.69407 -10.61230 -9.91752 -9.56740 -9.23144 -9.15627 -8.80292 -8.75162 -8.59227 -8.04012 -6.20840 -4.23354 0.99812 1.40013 3.21004 3.24350 3.35946 3.41401 3.93820 4.09561 4.32114 4.55269 4.65111 4.78017 4.83265 5.06001 5.12338 5.12903 5.19554 5.23637 5.28723 5.37818 5.46783 5.51471 5.61411 5.66383 5.75149 5.87390 5.93480 5.95829 5.98519 6.04137 6.08238 6.14038 6.19481 6.39819 6.48889 6.58259 6.67979 6.71419 6.85936 6.94318 6.98233 7.28549 7.30771 7.51922 8.16191 8.52960 8.76030 8.94165 9.40032 10.91209 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.003751 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.345233 B = 7462.149794 C = 8118.106523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.088 4.088 6 C -0.124 4.124 7 C 0.544 3.456 8 O -0.548 6.548 9 N -0.694 5.694 10 C 0.242 3.758 11 H 0.050 0.950 12 C -0.536 4.536 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.883 3.117 17 H -0.275 1.275 18 H -0.294 1.294 19 H -0.260 1.260 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.060 4.060 23 C -0.092 4.092 24 C -0.086 4.086 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.394 0.606 34 H 0.267 0.733 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -20.406 8.600 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.065 4.065 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.127 4.127 7 C 0.330 3.670 8 O -0.428 6.428 9 N -0.342 5.342 10 C 0.139 3.861 11 H 0.068 0.932 12 C -0.574 4.574 13 H 0.098 0.902 14 C -0.125 4.125 15 N -0.529 5.529 16 Si 0.713 3.287 17 H -0.202 1.202 18 H -0.222 1.222 19 H -0.184 1.184 20 C -0.177 4.177 21 C -0.201 4.201 22 C -0.079 4.079 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.205 4.205 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.228 0.772 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.716 -19.764 9.204 22.116 hybrid contribution 0.528 0.532 -0.051 0.752 sum -3.188 -19.232 9.153 21.536 Atomic orbital electron populations 1.21764 0.94674 1.01612 1.02473 1.20627 0.96264 0.92775 1.02964 1.19864 0.98027 0.95994 0.92661 1.20932 1.00772 0.94958 0.97529 1.21380 0.97411 0.94458 0.97473 1.20202 1.03325 0.95054 0.94155 1.18218 0.78290 0.85744 0.84714 1.90724 1.54744 1.65807 1.31502 1.46122 1.64505 1.16015 1.07580 1.19175 0.89918 0.78325 0.98712 0.93201 1.21049 1.40456 0.97975 0.97872 0.90212 1.24827 0.95027 0.97227 0.95392 1.69866 1.46638 1.14135 1.22248 0.86903 0.79853 0.78697 0.83296 1.20212 1.22150 1.18424 1.22280 0.99528 1.00132 0.95732 1.21877 0.98667 1.01629 0.97969 1.21131 0.95312 0.93493 0.97918 1.19648 1.00824 0.94021 0.94742 1.20578 0.98624 0.99288 0.93865 1.21770 0.98105 1.00005 1.00637 0.92364 0.92395 0.92451 0.91066 0.90607 0.85729 0.85361 0.77176 0.92281 0.92285 0.92736 0.92921 0.94958 0.92852 0.84909 0.90962 0.90702 0.92472 0.92528 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.72 37.16 0.36 -0.73 16 2 C -0.09 -0.71 5.38 -27.88 -0.15 -0.86 16 3 C -0.07 -0.71 5.14 -104.53 -0.54 -1.24 16 4 C -0.12 -1.42 9.66 -39.64 -0.38 -1.80 16 5 C -0.09 -1.20 9.54 -39.18 -0.37 -1.57 16 6 C -0.12 -1.99 5.87 -104.97 -0.62 -2.61 16 7 C 0.54 10.74 6.35 -12.33 -0.08 10.66 16 8 O -0.55 -12.33 13.50 5.32 0.07 -12.26 16 9 N -0.69 -14.16 4.97 -55.88 -0.28 -14.44 16 10 C 0.24 5.82 1.83 -69.08 -0.13 5.69 16 11 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 12 C -0.54 -14.55 9.31 -34.44 -0.32 -14.87 16 13 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 14 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 15 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 16 Si 0.88 21.89 24.41 -169.99 -4.15 17.74 16 17 H -0.28 -6.61 6.83 56.52 0.39 -6.22 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 20 C -0.14 -3.12 5.11 -26.73 -0.14 -3.25 16 21 C -0.14 -2.97 8.52 37.16 0.32 -2.66 16 22 C -0.06 -0.86 9.22 -39.19 -0.36 -1.22 16 23 C -0.09 -1.08 5.13 -104.68 -0.54 -1.62 16 24 C -0.09 -0.79 5.38 -27.89 -0.15 -0.94 16 25 C -0.15 -1.21 9.72 37.15 0.36 -0.85 16 26 H 0.06 0.44 6.79 -51.93 -0.35 0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 30 H 0.08 0.55 5.60 -51.93 -0.29 0.26 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.60 6.41 -52.49 -0.34 1.26 16 33 H 0.39 7.13 6.57 -40.82 -0.27 6.86 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.29 3.22 -51.93 -0.17 1.12 16 37 H 0.05 1.07 5.66 -51.93 -0.29 0.78 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 40 H 0.13 1.97 7.65 -52.48 -0.40 1.57 16 41 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 42 H 0.07 0.59 5.60 -51.93 -0.29 0.30 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.44 6.79 -51.93 -0.35 0.09 16 45 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.13 346.68 -8.09 -39.21 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.90 Total: 5.99 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.83 Total: -15.75 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.50 Total: -40.15 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.13 -8.09 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342572171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.517 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds