Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47063 * 2 1 4 4 C 1.38376 * 119.85287 * 265.01995 * 3 2 1 5 5 C 1.37941 * 120.14727 * 179.71758 * 4 3 2 6 6 C 1.39595 * 119.84884 * 0.49092 * 5 4 3 7 7 C 1.47846 * 120.14579 * 179.78725 * 6 5 4 8 8 O 1.21553 * 120.00154 * 179.72365 * 7 6 5 9 9 N 1.34777 * 119.99557 * 359.72064 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72375 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.50706 * 109.47303 * 205.27741 * 10 9 7 13 13 H 1.07998 * 119.99769 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00286 * 179.97438 * 12 10 9 15 15 N 1.31511 * 120.00035 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 119.99998 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.46865 * 89.99417 * 16 14 12 18 18 H 1.48498 * 109.47233 * 209.99802 * 16 14 12 19 19 H 1.48508 * 109.47028 * 329.99943 * 16 14 12 20 20 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 21 21 C 1.52996 * 109.47000 * 295.00080 * 20 10 9 22 22 C 1.39560 * 119.70992 * 359.51317 * 6 5 4 23 23 C 1.37971 * 119.85614 * 0.24900 * 22 6 5 24 24 C 1.50699 * 119.93119 * 179.97438 * 23 22 6 25 25 C 1.52995 * 109.47654 * 265.00392 * 24 23 22 26 26 H 1.08994 * 109.47382 * 300.00369 * 1 2 3 27 27 H 1.09004 * 109.47073 * 60.00110 * 1 2 3 28 28 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47539 * 240.00156 * 2 1 3 30 30 H 1.08997 * 109.47385 * 119.99649 * 2 1 3 31 31 H 1.08007 * 119.93162 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.07567 * 180.27375 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 0.97000 * 120.00229 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47148 * 54.99854 * 20 10 9 36 36 H 1.08994 * 109.47221 * 175.00107 * 20 10 9 37 37 H 1.09003 * 109.47322 * 59.99862 * 21 20 10 38 38 H 1.09004 * 109.47177 * 179.97438 * 21 20 10 39 39 H 1.09002 * 109.46986 * 299.99873 * 21 20 10 40 40 H 1.08008 * 120.06919 * 180.23053 * 22 6 5 41 41 H 1.08998 * 109.46526 * 25.00665 * 24 23 22 42 42 H 1.09003 * 109.46921 * 145.00236 * 24 23 22 43 43 H 1.08994 * 109.47346 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.47218 * 300.00278 * 25 24 23 45 45 H 1.09010 * 109.46778 * 59.99686 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3601 2.0356 -1.1956 5 6 2.8150 3.3378 -1.2032 6 6 2.9540 4.0322 -0.0002 7 6 3.4454 5.4266 -0.0003 8 8 3.5607 6.0305 1.0483 9 7 3.7656 6.0281 -1.1631 10 6 4.2467 7.4118 -1.1638 11 1 3.7439 7.9718 -0.3753 12 6 3.9498 8.0463 -2.4981 13 1 3.4521 7.4760 -3.2684 14 6 4.3126 9.3552 -2.7352 15 7 4.0540 9.9087 -3.8997 16 14 5.1729 10.3419 -1.4026 17 1 6.6425 10.1718 -1.5315 18 1 4.8262 11.7785 -1.5485 19 1 4.7340 9.8598 -0.0683 20 6 5.7565 7.4270 -0.9167 21 6 6.0485 6.8976 0.4888 22 6 2.6216 3.4063 1.2021 23 6 2.1632 2.1050 1.1952 24 6 1.8044 1.4274 2.4926 25 6 3.0019 0.6175 2.9933 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2557 1.4960 -2.1254 32 1 3.0663 3.8179 -2.1374 33 1 3.6733 5.5464 -2.0000 34 1 4.3089 10.8297 -4.0664 35 1 6.2517 6.7943 -1.6533 36 1 6.1290 8.4475 -1.0051 37 1 5.6760 5.8770 0.5773 38 1 7.1242 6.9079 0.6647 39 1 5.5534 7.5302 1.2255 40 1 2.7234 3.9394 2.1359 41 1 1.5392 2.1805 3.2345 42 1 0.9567 0.7611 2.3321 43 1 2.7425 0.1278 3.9318 44 1 3.2671 -0.1355 2.2513 45 1 3.8496 1.2839 3.1537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342572171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = -52.977303 kcal Electronic energy + Delta-G solvation = -23154.585255 eV Core-core repulsion = 19942.276599 eV Total energy + Delta-G solvation = -3212.308656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40407 -40.06406 -37.16413 -35.69523 -34.42778 -34.28968 -33.23508 -30.84156 -30.25020 -29.21040 -25.80266 -24.95279 -24.29529 -22.99793 -22.46421 -21.86081 -20.80939 -19.23537 -18.07868 -17.61785 -16.98404 -16.50801 -16.30360 -16.15256 -15.53938 -15.15378 -14.79978 -14.78506 -14.56683 -14.42886 -14.18627 -14.08897 -13.81891 -13.67910 -13.42626 -13.19112 -12.99717 -12.79675 -12.74735 -12.48559 -12.40512 -12.10123 -12.01235 -11.88585 -11.66113 -11.44481 -11.40602 -11.26826 -10.89114 -10.77523 -9.90921 -9.78107 -9.51971 -8.40315 -6.46167 -0.10433 0.40669 1.25225 1.33449 1.43658 1.92689 2.24269 2.40099 2.87441 2.95996 3.71912 3.75627 3.89715 3.99307 4.15266 4.19743 4.25150 4.28508 4.39652 4.46063 4.49762 4.56440 4.56743 4.62348 4.78773 4.79807 4.90731 4.96292 5.03723 5.07560 5.08561 5.11355 5.12977 5.18706 5.26065 5.35797 5.36917 5.39916 5.46895 5.50873 5.52091 5.61191 5.68098 5.98863 6.12522 6.54713 6.82814 7.16445 7.39020 8.74836 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.003751 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.345233 B = 7462.149794 C = 8118.106523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.055 4.055 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.151 4.151 7 C 0.544 3.456 8 O -0.582 6.582 9 N -0.695 5.695 10 C 0.249 3.751 11 H 0.022 0.978 12 C -0.536 4.536 13 H 0.056 0.944 14 C 0.032 3.968 15 N -0.932 5.932 16 Si 0.936 3.064 17 H -0.257 1.257 18 H -0.291 1.291 19 H -0.262 1.262 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.073 4.073 23 C -0.091 4.091 24 C -0.086 4.086 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.404 0.596 34 H 0.271 0.729 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 -23.296 9.315 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.056 4.056 4 C -0.140 4.140 5 C -0.112 4.112 6 C -0.154 4.154 7 C 0.333 3.667 8 O -0.465 6.465 9 N -0.344 5.344 10 C 0.145 3.855 11 H 0.040 0.960 12 C -0.574 4.574 13 H 0.074 0.926 14 C -0.168 4.168 15 N -0.571 5.571 16 Si 0.763 3.237 17 H -0.183 1.183 18 H -0.218 1.218 19 H -0.187 1.187 20 C -0.175 4.175 21 C -0.191 4.191 22 C -0.092 4.092 23 C -0.091 4.091 24 C -0.123 4.123 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.151 0.849 33 H 0.240 0.760 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.586 -22.686 9.911 25.014 hybrid contribution 0.378 1.289 -0.295 1.375 sum -3.208 -21.397 9.616 23.677 Atomic orbital electron populations 1.21766 0.93992 1.02737 1.01988 1.20725 0.96660 0.90629 1.04456 1.20301 0.95968 0.97389 0.91909 1.21280 0.99519 0.94044 0.99117 1.21494 0.97562 0.95435 0.96659 1.19942 1.06298 0.93253 0.95921 1.18777 0.77175 0.87089 0.83671 1.90690 1.56175 1.67073 1.32512 1.45950 1.64990 1.14811 1.08645 1.18824 0.91073 0.79845 0.95785 0.96027 1.21266 1.39509 0.98047 0.98559 0.92553 1.25528 0.95840 0.98315 0.97151 1.69967 1.48271 1.14752 1.24062 0.86045 0.79822 0.77273 0.80591 1.18314 1.21847 1.18684 1.22199 0.97986 0.99997 0.97304 1.21756 1.00350 1.00904 0.96097 1.21146 0.96367 0.94812 0.96857 1.19932 0.99725 0.92927 0.96562 1.20651 0.99713 0.99505 0.92416 1.21758 0.97016 0.99731 1.01764 0.92770 0.93040 0.90565 0.89480 0.89318 0.82834 0.84861 0.75985 0.91988 0.91256 0.93539 0.93141 0.92059 0.94416 0.86323 0.91285 0.88772 0.90684 0.91755 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.72 71.98 0.70 -0.94 16 2 C -0.09 -1.05 5.38 29.85 0.16 -0.89 16 3 C -0.06 -1.05 5.14 -19.80 -0.10 -1.15 16 4 C -0.12 -2.48 9.66 22.23 0.21 -2.27 16 5 C -0.09 -2.43 9.54 22.53 0.21 -2.22 16 6 C -0.15 -4.89 5.87 -20.09 -0.12 -5.01 16 7 C 0.54 22.09 6.35 86.79 0.55 22.64 16 8 O -0.58 -27.17 13.50 -3.88 -0.05 -27.23 16 9 N -0.70 -29.04 4.97 -448.97 -2.23 -31.27 16 10 C 0.25 12.23 1.83 44.25 0.08 12.31 16 11 H 0.02 1.19 6.63 -2.39 -0.02 1.18 16 12 C -0.54 -29.86 9.31 25.60 0.24 -29.62 16 13 H 0.06 3.33 7.98 -2.91 -0.02 3.30 16 14 C 0.03 1.81 5.45 84.66 0.46 2.27 16 15 N -0.93 -56.38 13.96 21.45 0.30 -56.08 16 16 Si 0.94 45.47 24.41 68.60 1.67 47.15 16 17 H -0.26 -11.72 6.83 99.48 0.68 -11.04 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 19 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 20 C -0.14 -6.09 5.11 30.59 0.16 -5.94 16 21 C -0.13 -5.42 8.52 71.98 0.61 -4.81 16 22 C -0.07 -2.12 9.22 22.53 0.21 -1.91 16 23 C -0.09 -2.00 5.13 -19.90 -0.10 -2.11 16 24 C -0.09 -1.38 5.38 29.85 0.16 -1.22 16 25 C -0.15 -2.03 9.72 71.98 0.70 -1.33 16 26 H 0.05 0.65 6.79 -2.39 -0.02 0.64 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.84 8.05 -2.39 -0.02 0.82 16 30 H 0.09 0.89 5.60 -2.39 -0.01 0.88 16 31 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.13 3.25 6.41 -2.91 -0.02 3.23 16 33 H 0.40 14.96 6.57 -92.71 -0.61 14.35 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 35 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.05 2.15 3.22 -2.39 -0.01 2.14 16 37 H 0.05 2.05 5.66 -2.39 -0.01 2.04 16 38 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 40 H 0.12 3.70 7.65 -2.91 -0.02 3.68 16 41 H 0.07 1.16 8.05 -2.39 -0.02 1.15 16 42 H 0.09 1.17 5.60 -2.39 -0.01 1.15 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.80 6.79 -2.39 -0.02 0.78 16 45 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -68.73 346.68 4.13 -64.60 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.30 Total: 25.03 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.14 Total: -22.20 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.93 Total: -87.35 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.15 kcal Total: -68.73 4.13 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342572171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.627 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds