Wall clock time and date at job start Tue Mar 31 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52997 * 109.47297 * 120.00413 * 2 1 3 5 5 C 1.52998 * 109.47009 * 175.00182 * 4 2 1 6 6 N 1.46508 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99614 * 269.99786 * 6 5 4 8 8 C 1.34773 * 120.00312 * 89.99592 * 6 5 4 9 9 O 1.21286 * 119.99493 * 4.71028 * 8 6 5 10 10 C 1.50700 * 120.00144 * 184.70994 * 8 6 5 11 11 H 1.08996 * 109.47038 * 334.46169 * 10 8 6 12 12 C 1.50697 * 109.46809 * 94.46734 * 10 8 6 13 13 H 1.08001 * 119.99463 * 237.06136 * 12 10 8 14 14 C 1.37870 * 120.00548 * 56.79066 * 12 10 8 15 15 N 1.31518 * 119.99625 * 9.56744 * 14 12 10 16 16 Si 1.86795 * 120.00306 * 189.57461 * 14 12 10 17 17 H 1.48502 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47384 * 119.99396 * 16 14 12 19 19 H 1.48503 * 109.47124 * 239.99903 * 16 14 12 20 20 C 1.50700 * 109.47107 * 214.46737 * 10 8 6 21 21 C 1.38231 * 119.99647 * 216.05520 * 20 10 8 22 22 C 1.38237 * 119.99673 * 179.80850 * 21 20 10 23 23 C 1.38234 * 120.00147 * 0.39374 * 22 21 20 24 24 C 1.38237 * 119.99968 * 359.85789 * 23 22 21 25 25 C 1.38236 * 119.99938 * 36.31729 * 20 10 8 26 26 H 1.08999 * 109.46995 * 299.99247 * 1 2 3 27 27 H 1.08994 * 109.47533 * 59.99872 * 1 2 3 28 28 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47078 * 240.00206 * 2 1 3 30 30 H 1.08998 * 109.47029 * 60.00176 * 3 2 1 31 31 H 1.08997 * 109.46632 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47075 * 300.00409 * 3 2 1 33 33 H 1.08997 * 109.47426 * 54.99653 * 4 2 1 34 34 H 1.09008 * 109.47225 * 294.99640 * 4 2 1 35 35 H 1.08997 * 109.47458 * 59.99491 * 5 4 2 36 36 H 1.09005 * 109.47274 * 299.99352 * 5 4 2 37 37 H 1.09004 * 109.47081 * 265.20638 * 7 6 5 38 38 H 1.08993 * 109.47500 * 25.20522 * 7 6 5 39 39 H 1.08996 * 109.46890 * 145.20897 * 7 6 5 40 40 H 0.97001 * 119.99813 * 180.02562 * 15 14 12 41 41 H 1.07995 * 120.00297 * 359.97438 * 21 20 10 42 42 H 1.08003 * 120.00140 * 180.22032 * 22 21 20 43 43 H 1.08004 * 120.00363 * 179.83047 * 23 22 21 44 44 H 1.08000 * 120.00205 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.00640 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0532 -1.5223 2.3837 7 6 4.4016 -0.7551 3.5822 8 6 4.1819 -2.8639 2.3813 9 8 3.9756 -3.4910 1.3638 10 6 4.5821 -3.5847 3.6427 11 1 5.1453 -2.9077 4.2850 12 6 3.3465 -4.0531 4.3671 13 1 3.1693 -3.7453 5.3871 14 6 2.4395 -4.8699 3.7261 15 7 2.7375 -5.3931 2.5569 16 14 0.7872 -5.2334 4.5181 17 1 0.6982 -4.5297 5.8228 18 1 -0.3033 -4.7635 3.6264 19 1 0.6535 -6.6964 4.7352 20 6 5.4395 -4.7733 3.2916 21 6 5.3340 -5.9416 4.0228 22 6 6.1176 -7.0332 3.6982 23 6 7.0126 -6.9537 2.6477 24 6 7.1218 -5.7836 1.9198 25 6 6.3354 -4.6933 2.2419 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1370 35 1 3.9995 0.1675 1.1419 36 1 3.8533 -1.3940 0.3001 37 1 5.4712 -0.5447 3.5807 38 1 3.8468 0.1830 3.5871 39 1 4.1462 -1.3330 4.4704 40 1 2.0993 -5.9675 2.1057 41 1 4.6375 -6.0026 4.8458 42 1 6.0327 -7.9473 4.2672 43 1 7.6268 -7.8056 2.3958 44 1 7.8213 -5.7213 1.0993 45 1 6.4206 -3.7792 1.6730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354956728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:25 Heat of formation + Delta-G solvation = -18.944795 kcal Electronic energy + Delta-G solvation = -24076.712583 eV Core-core repulsion = 20865.879687 eV Total energy + Delta-G solvation = -3210.832896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.13685 -37.72385 -36.35330 -34.13307 -33.42348 -30.89390 -29.68570 -29.29945 -27.14554 -27.07436 -25.73832 -24.05550 -22.67024 -21.28763 -20.29634 -19.72083 -18.17171 -16.68132 -15.87439 -15.62547 -15.19078 -14.89099 -14.58036 -14.24372 -13.91495 -13.63382 -13.35520 -13.27048 -12.62921 -12.48378 -12.30376 -12.17612 -12.10835 -12.00775 -11.70461 -11.62824 -11.46401 -11.21708 -11.00235 -10.92108 -10.64725 -10.62155 -10.47253 -10.35039 -10.16456 -10.01905 -9.60162 -9.34338 -8.53659 -8.16094 -7.73748 -7.61235 -7.34240 -5.96465 -4.15167 2.57591 2.63120 3.25548 3.35685 3.36541 3.99870 4.22169 4.41677 5.01130 5.04199 5.11045 5.13307 5.26151 5.49044 5.66335 5.71600 5.79853 5.86862 5.87160 5.91487 5.94354 5.97493 6.01950 6.06931 6.11878 6.16250 6.23148 6.31751 6.37974 6.41220 6.51750 6.67559 6.67851 6.74779 6.79965 6.88090 7.18218 7.22041 7.52200 7.57152 7.67265 7.77855 7.86785 8.18916 8.30123 8.51387 8.85237 9.48909 9.74456 10.98318 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.006018 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.529471 B = 4651.366772 C = 5691.697240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.128 4.128 5 C 0.122 3.878 6 N -0.638 5.638 7 C 0.089 3.911 8 C 0.524 3.476 9 O -0.505 6.505 10 C 0.062 3.938 11 H 0.051 0.949 12 C -0.544 4.544 13 H 0.065 0.935 14 C 0.075 3.925 15 N -0.809 5.809 16 Si 0.878 3.122 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.283 1.283 20 C 0.001 3.999 21 C -0.069 4.069 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.136 4.136 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.260 0.740 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 9.048 -0.878 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.166 4.166 5 C -0.002 4.002 6 N -0.375 5.375 7 C -0.055 4.055 8 C 0.314 3.686 9 O -0.377 6.377 10 C 0.041 3.959 11 H 0.069 0.931 12 C -0.581 4.581 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.440 5.440 16 Si 0.705 3.295 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.209 1.209 20 C 0.000 4.000 21 C -0.087 4.087 22 C -0.158 4.158 23 C -0.168 4.168 24 C -0.155 4.155 25 C -0.134 4.134 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.050 8.532 -1.626 8.924 hybrid contribution -1.297 -0.220 0.222 1.334 sum 0.753 8.311 -1.404 8.463 Atomic orbital electron populations 1.21816 0.95589 1.01768 1.01078 1.21069 0.95508 0.95933 0.98925 1.21886 1.01066 0.96213 1.01186 1.21995 0.96808 1.01109 0.96733 1.21245 0.93144 0.95991 0.89806 1.48082 1.68993 1.07236 1.13195 1.21596 0.98656 0.95975 0.89290 1.21492 0.76266 0.79796 0.91026 1.90622 1.48264 1.64726 1.34106 1.17947 0.95413 0.91222 0.91321 0.93126 1.20535 1.05447 1.32807 0.99306 0.91699 1.25056 0.97987 0.95474 0.94999 1.70227 1.33726 1.26988 1.13018 0.86763 0.84987 0.78139 0.79631 1.19621 1.21060 1.20934 1.19885 0.91324 0.96162 0.92601 1.20975 0.96167 0.91670 0.99884 1.20969 0.98088 0.98298 0.98494 1.20732 1.00778 0.97263 0.97990 1.20777 1.00672 0.94196 0.99816 1.20864 0.96864 0.97936 0.97729 0.92940 0.93164 0.92673 0.91287 0.92912 0.92538 0.93227 0.91245 0.92433 0.92139 0.90832 0.94228 0.92739 0.90395 0.92935 0.85822 0.88028 0.88221 0.88198 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 37.16 0.34 -1.48 16 2 C -0.10 -1.28 2.92 -90.62 -0.26 -1.54 16 3 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 4 C -0.13 -2.10 5.01 -26.73 -0.13 -2.23 16 5 C 0.12 2.07 5.18 -4.04 -0.02 2.05 16 6 N -0.64 -12.38 2.87 -181.57 -0.52 -12.90 16 7 C 0.09 1.38 9.82 59.85 0.59 1.97 16 8 C 0.52 12.43 5.28 -10.99 -0.06 12.37 16 9 O -0.51 -13.79 12.99 5.55 0.07 -13.72 16 10 C 0.06 1.48 2.06 -94.08 -0.19 1.28 16 11 H 0.05 1.09 6.27 -51.93 -0.33 0.76 16 12 C -0.54 -13.77 7.11 -34.44 -0.24 -14.02 16 13 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 14 C 0.08 1.99 4.56 -17.82 -0.08 1.91 16 15 N -0.81 -22.85 9.76 55.43 0.54 -22.31 16 16 Si 0.88 20.63 29.55 -169.99 -5.02 15.61 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 C 0.00 0.03 4.18 -104.63 -0.44 -0.40 16 21 C -0.07 -1.60 8.33 -39.58 -0.33 -1.93 16 22 C -0.14 -2.93 10.05 -39.58 -0.40 -3.33 16 23 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 24 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 25 C -0.12 -2.64 8.51 -39.58 -0.34 -2.98 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.06 0.85 6.50 -51.93 -0.34 0.51 16 36 H 0.07 1.40 7.36 -51.93 -0.38 1.01 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.71 8.03 -51.93 -0.42 0.29 16 39 H 0.08 1.30 6.46 -51.93 -0.34 0.96 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 2.94 6.70 -52.49 -0.35 2.59 16 42 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 44 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.10 2.24 7.06 -52.49 -0.37 1.87 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -30.17 356.26 -9.08 -39.24 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.48 Total: 4.92 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.03 Total: -16.20 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.02 Total: -35.21 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.17 -9.08 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354956728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.298 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds