Wall clock time and date at job start Tue Mar 31 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52997 * 109.47297 * 120.00413 * 2 1 3 5 5 C 1.52998 * 109.47009 * 175.00182 * 4 2 1 6 6 N 1.46508 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.46499 * 119.99614 * 269.99786 * 6 5 4 8 8 C 1.34773 * 120.00312 * 89.99592 * 6 5 4 9 9 O 1.21286 * 119.99493 * 4.71028 * 8 6 5 10 10 C 1.50700 * 120.00144 * 184.70994 * 8 6 5 11 11 H 1.08996 * 109.47038 * 334.46169 * 10 8 6 12 12 C 1.50697 * 109.46809 * 94.46734 * 10 8 6 13 13 H 1.08001 * 119.99463 * 237.06136 * 12 10 8 14 14 C 1.37870 * 120.00548 * 56.79066 * 12 10 8 15 15 N 1.31518 * 119.99625 * 9.56744 * 14 12 10 16 16 Si 1.86795 * 120.00306 * 189.57461 * 14 12 10 17 17 H 1.48502 * 109.47139 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47384 * 119.99396 * 16 14 12 19 19 H 1.48503 * 109.47124 * 239.99903 * 16 14 12 20 20 C 1.50700 * 109.47107 * 214.46737 * 10 8 6 21 21 C 1.38231 * 119.99647 * 216.05520 * 20 10 8 22 22 C 1.38237 * 119.99673 * 179.80850 * 21 20 10 23 23 C 1.38234 * 120.00147 * 0.39374 * 22 21 20 24 24 C 1.38237 * 119.99968 * 359.85789 * 23 22 21 25 25 C 1.38236 * 119.99938 * 36.31729 * 20 10 8 26 26 H 1.08999 * 109.46995 * 299.99247 * 1 2 3 27 27 H 1.08994 * 109.47533 * 59.99872 * 1 2 3 28 28 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47078 * 240.00206 * 2 1 3 30 30 H 1.08998 * 109.47029 * 60.00176 * 3 2 1 31 31 H 1.08997 * 109.46632 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47075 * 300.00409 * 3 2 1 33 33 H 1.08997 * 109.47426 * 54.99653 * 4 2 1 34 34 H 1.09008 * 109.47225 * 294.99640 * 4 2 1 35 35 H 1.08997 * 109.47458 * 59.99491 * 5 4 2 36 36 H 1.09005 * 109.47274 * 299.99352 * 5 4 2 37 37 H 1.09004 * 109.47081 * 265.20638 * 7 6 5 38 38 H 1.08993 * 109.47500 * 25.20522 * 7 6 5 39 39 H 1.08996 * 109.46890 * 145.20897 * 7 6 5 40 40 H 0.97001 * 119.99813 * 180.02562 * 15 14 12 41 41 H 1.07995 * 120.00297 * 359.97438 * 21 20 10 42 42 H 1.08003 * 120.00140 * 180.22032 * 22 21 20 43 43 H 1.08004 * 120.00363 * 179.83047 * 23 22 21 44 44 H 1.08000 * 120.00205 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.00640 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0532 -1.5223 2.3837 7 6 4.4016 -0.7551 3.5822 8 6 4.1819 -2.8639 2.3813 9 8 3.9756 -3.4910 1.3638 10 6 4.5821 -3.5847 3.6427 11 1 5.1453 -2.9077 4.2850 12 6 3.3465 -4.0531 4.3671 13 1 3.1693 -3.7453 5.3871 14 6 2.4395 -4.8699 3.7261 15 7 2.7375 -5.3931 2.5569 16 14 0.7872 -5.2334 4.5181 17 1 0.6982 -4.5297 5.8228 18 1 -0.3033 -4.7635 3.6264 19 1 0.6535 -6.6964 4.7352 20 6 5.4395 -4.7733 3.2916 21 6 5.3340 -5.9416 4.0228 22 6 6.1176 -7.0332 3.6982 23 6 7.0126 -6.9537 2.6477 24 6 7.1218 -5.7836 1.9198 25 6 6.3354 -4.6933 2.2419 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1370 35 1 3.9995 0.1675 1.1419 36 1 3.8533 -1.3940 0.3001 37 1 5.4712 -0.5447 3.5807 38 1 3.8468 0.1830 3.5871 39 1 4.1462 -1.3330 4.4704 40 1 2.0993 -5.9675 2.1057 41 1 4.6375 -6.0026 4.8458 42 1 6.0327 -7.9473 4.2672 43 1 7.6268 -7.8056 2.3958 44 1 7.8213 -5.7213 1.0993 45 1 6.4206 -3.7792 1.6730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354956728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:25 Heat of formation + Delta-G solvation = -33.910663 kcal Electronic energy + Delta-G solvation = -24077.361551 eV Core-core repulsion = 20865.879687 eV Total energy + Delta-G solvation = -3211.481864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84996 -39.32656 -37.69097 -35.66595 -35.33150 -32.72781 -31.37680 -30.65950 -28.89317 -28.02193 -27.14838 -25.85987 -24.18194 -22.98537 -21.94370 -20.88030 -19.88429 -18.49332 -17.54725 -17.34521 -16.71725 -16.51215 -16.15152 -15.66814 -15.49981 -15.28797 -14.72806 -14.59660 -14.21946 -13.96264 -13.90448 -13.77500 -13.55590 -13.29422 -13.09459 -13.00112 -12.92610 -12.86792 -12.69365 -12.47058 -12.24442 -12.13996 -11.76181 -11.75178 -11.58849 -11.46642 -11.36306 -11.18958 -10.55454 -10.01190 -9.41814 -9.20138 -9.06366 -7.97780 -6.19451 0.88184 0.95117 1.35121 1.40264 1.48136 2.32245 2.45786 2.59064 3.24550 3.32887 3.90877 3.94760 4.06978 4.20983 4.31276 4.36120 4.49704 4.51475 4.57171 4.59654 4.63265 4.74504 4.76156 4.83241 4.87197 4.88557 4.96993 5.01864 5.04343 5.08207 5.15284 5.15996 5.18404 5.30323 5.46567 5.48343 5.51224 5.54787 5.71406 5.88946 5.95935 6.01380 6.06945 6.42875 6.53740 6.69449 7.00343 7.45765 7.97778 8.94520 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.006018 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.529471 B = 4651.366772 C = 5691.697240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.117 4.117 5 C 0.123 3.877 6 N -0.639 5.639 7 C 0.083 3.917 8 C 0.522 3.478 9 O -0.552 6.552 10 C 0.054 3.946 11 H 0.066 0.934 12 C -0.540 4.540 13 H 0.067 0.933 14 C 0.036 3.964 15 N -0.839 5.839 16 Si 0.929 3.071 17 H -0.258 1.258 18 H -0.295 1.295 19 H -0.283 1.283 20 C -0.019 4.019 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.016 0.984 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.249 0.751 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 10.515 -0.546 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.156 4.156 5 C 0.000 4.000 6 N -0.375 5.375 7 C -0.060 4.060 8 C 0.312 3.688 9 O -0.427 6.427 10 C 0.033 3.967 11 H 0.084 0.916 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.171 4.171 15 N -0.471 5.471 16 Si 0.755 3.245 17 H -0.182 1.182 18 H -0.222 1.222 19 H -0.209 1.209 20 C -0.020 4.020 21 C -0.110 4.110 22 C -0.161 4.161 23 C -0.164 4.164 24 C -0.157 4.157 25 C -0.152 4.152 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.760 10.049 -1.249 10.496 hybrid contribution -1.450 -0.635 0.140 1.589 sum 1.310 9.414 -1.109 9.570 Atomic orbital electron populations 1.21811 0.94957 1.00835 1.02526 1.21051 0.96086 0.97404 0.96668 1.21831 1.01344 0.93981 1.02518 1.21881 0.96151 0.98683 0.98918 1.21383 0.93655 0.97107 0.87875 1.48118 1.67891 1.06421 1.15069 1.21821 1.00624 0.96473 0.87034 1.21430 0.75818 0.81190 0.90321 1.90586 1.50393 1.66286 1.35454 1.18031 0.95088 0.91890 0.91685 0.91630 1.20763 1.05832 1.31881 0.99332 0.91520 1.25614 1.00548 0.95640 0.95310 1.70409 1.34051 1.28147 1.14465 0.85952 0.81514 0.77883 0.79110 1.18202 1.22231 1.20912 1.19968 0.92022 0.96539 0.93512 1.20972 0.97170 0.92696 1.00138 1.21303 0.97450 0.98427 0.98918 1.21148 1.00350 0.98069 0.96840 1.21151 1.00392 0.93715 1.00403 1.20919 0.97794 0.98697 0.97782 0.92160 0.91010 0.94840 0.92403 0.91950 0.92023 0.91565 0.96483 0.91440 0.88044 0.93471 0.91991 0.89466 0.91716 0.94164 0.87361 0.85422 0.84392 0.85346 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 2 C -0.09 -2.41 2.92 -10.79 -0.03 -2.44 16 3 C -0.14 -2.66 8.95 71.98 0.64 -2.01 16 4 C -0.12 -3.88 5.01 30.59 0.15 -3.73 16 5 C 0.12 4.12 5.18 86.38 0.45 4.57 16 6 N -0.64 -24.72 2.87 -846.75 -2.43 -27.16 16 7 C 0.08 2.43 9.82 127.77 1.25 3.68 16 8 C 0.52 25.45 5.28 87.66 0.46 25.91 16 9 O -0.55 -31.49 12.99 -3.05 -0.04 -31.53 16 10 C 0.05 2.63 2.06 -13.03 -0.03 2.60 16 11 H 0.07 2.85 6.27 -2.39 -0.01 2.84 16 12 C -0.54 -27.91 7.11 25.60 0.18 -27.73 16 13 H 0.07 3.33 7.83 -2.91 -0.02 3.31 16 14 C 0.04 1.94 4.56 84.65 0.39 2.33 16 15 N -0.84 -49.21 9.76 21.45 0.21 -49.00 16 16 Si 0.93 43.35 29.55 68.60 2.03 45.38 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 C -0.02 -0.94 4.18 -19.87 -0.08 -1.03 16 21 C -0.09 -4.32 8.33 22.27 0.19 -4.14 16 22 C -0.14 -5.82 10.05 22.27 0.22 -5.59 16 23 C -0.15 -5.49 10.05 22.27 0.22 -5.27 16 24 C -0.14 -5.55 10.05 22.27 0.22 -5.33 16 25 C -0.13 -6.17 8.51 22.27 0.19 -5.98 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.11 6.57 -2.39 -0.02 1.09 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.10 2.58 6.50 -2.39 -0.02 2.56 16 36 H 0.05 1.84 7.36 -2.38 -0.02 1.83 16 37 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.09 1.99 8.03 -2.39 -0.02 1.97 16 39 H 0.06 2.08 6.46 -2.39 -0.02 2.07 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.11 5.31 6.70 -2.91 -0.02 5.29 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 45 H 0.09 4.22 7.06 -2.91 -0.02 4.20 16 Total: -1.00 -68.31 356.26 5.80 -62.51 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.94 Total: 26.79 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 5.10 Total: -26.99 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.22 Total: -76.15 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.04 Total: -31.53 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.31 5.80 -62.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354956728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.596 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds