Wall clock time and date at job start Tue Mar 31 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 C 1.52999 * 109.47275 * 60.00166 * 3 2 1 5 5 C 1.53000 * 109.47032 * 300.00366 * 3 2 1 6 6 C 1.52998 * 109.47215 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47302 * 180.02562 * 6 3 2 8 8 C 1.34783 * 120.00082 * 180.02562 * 7 6 3 9 9 O 1.21274 * 120.00070 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99628 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47499 * 322.43547 * 10 8 7 12 12 C 1.50702 * 109.47219 * 82.44206 * 10 8 7 13 13 H 1.07997 * 120.00147 * 54.76970 * 12 10 8 14 14 C 1.37883 * 119.99750 * 234.78100 * 12 10 8 15 15 N 1.31517 * 119.99994 * 175.91288 * 14 12 10 16 16 Si 1.86801 * 119.99984 * 355.90607 * 14 12 10 17 17 H 1.48501 * 109.46863 * 83.73832 * 16 14 12 18 18 H 1.48496 * 109.47188 * 203.73574 * 16 14 12 19 19 H 1.48496 * 109.46949 * 323.73543 * 16 14 12 20 20 C 1.50700 * 109.46779 * 202.43722 * 10 8 7 21 21 C 1.38234 * 119.99828 * 112.26656 * 20 10 8 22 22 C 1.38245 * 119.99675 * 179.97438 * 21 20 10 23 23 C 1.38228 * 119.99975 * 359.95388 * 22 21 20 24 24 C 1.38237 * 120.00308 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99855 * 0.06917 * 24 23 22 26 26 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46936 * 299.99832 * 1 2 3 28 28 H 1.09001 * 109.47203 * 59.99545 * 1 2 3 29 29 H 1.09003 * 109.47129 * 239.99652 * 2 1 3 30 30 H 1.09001 * 109.47203 * 120.00455 * 2 1 3 31 31 H 1.08991 * 109.47591 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46659 * 300.00696 * 4 3 2 33 33 H 1.09001 * 109.46769 * 59.99876 * 4 3 2 34 34 H 1.09002 * 109.47098 * 299.99716 * 5 3 2 35 35 H 1.08994 * 109.47542 * 59.99693 * 5 3 2 36 36 H 1.09001 * 109.47269 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47303 * 60.00045 * 6 3 2 38 38 H 1.09001 * 109.47003 * 300.00230 * 6 3 2 39 39 H 0.97002 * 120.00172 * 359.97438 * 7 6 3 40 40 H 0.96994 * 120.00132 * 179.97438 * 15 14 12 41 41 H 1.07992 * 120.00341 * 359.97438 * 21 20 10 42 42 H 1.08004 * 119.99417 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.99490 * 179.72107 * 23 22 21 44 44 H 1.07997 * 119.99922 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4424 -0.0006 7 7 4.0584 2.8236 0.0000 8 6 5.3836 3.0698 -0.0010 9 8 6.1716 2.1480 -0.0018 10 6 5.8859 4.4906 -0.0009 11 1 5.2385 5.1049 -0.6267 12 6 5.8782 5.0261 1.4077 13 1 6.3978 4.4938 2.1906 14 6 5.2075 6.1956 1.6970 15 7 5.1327 6.6206 2.9393 16 14 4.4054 7.1763 0.3243 17 1 3.0621 6.6137 0.0338 18 1 4.2680 8.5941 0.7440 19 1 5.2483 7.1007 -0.8958 20 6 7.2910 4.5265 -0.5443 21 6 7.5469 5.1341 -1.7593 22 6 8.8360 5.1675 -2.2575 23 6 9.8692 4.5943 -1.5401 24 6 9.6136 3.9880 -0.3244 25 6 8.3244 3.9538 0.1733 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8938 3.1912 1.2495 32 1 0.4401 2.1636 1.2493 33 1 1.8935 1.6498 2.1392 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2492 36 1 1.8937 3.1913 -1.2495 37 1 3.9330 0.9287 -0.8909 38 1 3.9337 0.9284 0.8891 39 1 3.4281 3.5609 0.0003 40 1 4.6612 7.4435 3.1428 41 1 6.7398 5.5826 -2.3194 42 1 9.0358 5.6418 -3.2070 43 1 10.8756 4.6165 -1.9315 44 1 10.4208 3.5398 0.2358 45 1 8.1246 3.4798 1.1229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435887639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:09 Heat of formation + Delta-G solvation = -38.886040 kcal Electronic energy + Delta-G solvation = -23571.270403 eV Core-core repulsion = 20359.572790 eV Total energy + Delta-G solvation = -3211.697613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49563 -38.43839 -37.31931 -33.59031 -33.35937 -31.52841 -30.11849 -29.98918 -27.96017 -27.23993 -26.38749 -23.85714 -22.89158 -21.82454 -20.83539 -19.39300 -18.51837 -17.14288 -16.45238 -16.08194 -15.31085 -15.02358 -14.74770 -14.55022 -14.27643 -14.14402 -13.80016 -13.36811 -13.14655 -12.93732 -12.71164 -12.58171 -12.20007 -12.06229 -11.97555 -11.94921 -11.76888 -11.60891 -11.13966 -11.09521 -11.08753 -10.57394 -10.52262 -10.46363 -10.41035 -10.12332 -9.99992 -9.49846 -9.01424 -8.67962 -8.34521 -8.11803 -7.80156 -6.30688 -4.32866 2.15778 2.23042 3.07653 3.21152 3.21847 3.68764 3.98050 4.18721 4.64520 4.74822 4.81612 4.84337 5.04975 5.24069 5.35174 5.43386 5.55678 5.59207 5.61124 5.72151 5.73679 5.80405 5.88817 5.89957 5.96151 5.99666 6.03759 6.06899 6.13221 6.18519 6.22853 6.25026 6.37429 6.42673 6.45481 6.50832 6.75458 6.87946 7.16582 7.18218 7.27514 7.30646 7.61692 7.81224 8.18637 8.35860 8.73582 9.18142 9.26627 10.80882 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005478 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.554197 B = 5110.374125 C = 6182.023785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.077 4.077 4 C -0.145 4.145 5 C -0.144 4.144 6 C 0.133 3.867 7 N -0.732 5.732 8 C 0.531 3.469 9 O -0.561 6.561 10 C 0.031 3.969 11 H 0.059 0.941 12 C -0.503 4.503 13 H 0.084 0.916 14 C 0.082 3.918 15 N -0.882 5.882 16 Si 0.866 3.134 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.031 4.031 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.069 4.069 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.397 0.603 40 H 0.269 0.731 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -7.074 -8.052 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.077 4.077 4 C -0.203 4.203 5 C -0.201 4.201 6 C 0.009 3.991 7 N -0.385 5.385 8 C 0.320 3.680 9 O -0.439 6.439 10 C 0.009 3.991 11 H 0.077 0.923 12 C -0.540 4.540 13 H 0.102 0.898 14 C -0.123 4.123 15 N -0.517 5.517 16 Si 0.692 3.308 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.032 4.032 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.087 4.087 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.789 -7.583 -7.904 12.389 hybrid contribution -0.759 1.080 -0.506 1.414 sum -6.549 -6.503 -8.409 12.486 Atomic orbital electron populations 1.21873 0.95857 1.01264 1.02135 1.21485 0.95911 0.95255 1.02151 1.20811 0.94557 0.96012 0.96361 1.21938 1.00634 1.00963 0.96732 1.21935 1.00894 1.00477 0.96837 1.21230 0.91877 0.84516 1.01522 1.46013 1.07717 1.07579 1.77192 1.21442 0.81193 0.92550 0.72862 1.90564 1.55459 1.47097 1.50772 1.18368 0.90809 0.90591 0.99284 0.92348 1.20553 1.34318 1.08694 0.90482 0.89830 1.25054 0.95106 0.96773 0.95364 1.69855 1.41371 1.22624 1.17881 0.87009 0.80174 0.80316 0.83282 1.19659 1.20889 1.18493 1.19984 0.96515 0.94449 0.92204 1.21002 0.96536 1.01506 0.96174 1.20879 0.93195 1.01299 0.99583 1.20875 0.98194 1.00949 0.96024 1.21058 0.96828 1.00715 0.96370 1.20928 0.91504 0.96843 0.99387 0.93092 0.92337 0.92488 0.91917 0.91748 0.92020 0.92441 0.92345 0.92593 0.92279 0.92504 0.92317 0.92068 0.76809 0.92094 0.87282 0.87281 0.87351 0.87103 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.21 37.16 0.34 -1.02 16 2 C -0.11 -1.13 4.99 -26.73 -0.13 -1.26 16 3 C -0.08 -0.93 0.56 -154.51 -0.09 -1.02 16 4 C -0.15 -1.84 7.95 37.16 0.30 -1.54 16 5 C -0.14 -1.63 7.95 37.16 0.30 -1.33 16 6 C 0.13 2.06 4.56 -4.04 -0.02 2.05 16 7 N -0.73 -13.46 4.96 -60.30 -0.30 -13.76 16 8 C 0.53 11.77 6.93 -10.98 -0.08 11.69 16 9 O -0.56 -13.67 15.23 5.56 0.08 -13.59 16 10 C 0.03 0.72 2.22 -94.08 -0.21 0.51 16 11 H 0.06 1.29 4.57 -51.93 -0.24 1.05 16 12 C -0.50 -13.26 8.24 -34.44 -0.28 -13.55 16 13 H 0.08 2.47 7.69 -52.49 -0.40 2.06 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.88 -25.07 13.96 55.43 0.77 -24.30 16 16 Si 0.87 19.46 26.93 -169.99 -4.58 14.88 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.26 -5.67 6.81 56.52 0.39 -5.28 16 20 C -0.03 -0.69 4.53 -104.62 -0.47 -1.16 16 21 C -0.13 -2.70 9.67 -39.58 -0.38 -3.08 16 22 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 23 C -0.14 -2.47 10.05 -39.59 -0.40 -2.87 16 24 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.07 -1.52 8.05 -39.58 -0.32 -1.83 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.88 6.86 -51.93 -0.36 0.53 16 32 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 36 H 0.06 0.69 6.86 -51.93 -0.36 0.33 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.40 6.91 6.16 -40.82 -0.25 6.66 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.11 2.03 7.96 -52.49 -0.42 1.61 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.12 2.82 7.44 -52.49 -0.39 2.43 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -29.81 355.30 -8.13 -37.94 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.13 Total: 11.46 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.34 Total: -17.99 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.47 Total: -38.06 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.58 Total: 14.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.81 -8.13 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435887639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.949 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds