Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 C 1.52999 * 109.47275 * 60.00166 * 3 2 1 5 5 C 1.53000 * 109.47032 * 300.00366 * 3 2 1 6 6 C 1.52998 * 109.47215 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47302 * 180.02562 * 6 3 2 8 8 C 1.34783 * 120.00082 * 180.02562 * 7 6 3 9 9 O 1.21274 * 120.00070 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99628 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47499 * 322.43547 * 10 8 7 12 12 C 1.50702 * 109.47219 * 82.44206 * 10 8 7 13 13 H 1.07997 * 120.00147 * 54.76970 * 12 10 8 14 14 C 1.37883 * 119.99750 * 234.78100 * 12 10 8 15 15 N 1.31517 * 119.99994 * 175.91288 * 14 12 10 16 16 Si 1.86801 * 119.99984 * 355.90607 * 14 12 10 17 17 H 1.48501 * 109.46863 * 83.73832 * 16 14 12 18 18 H 1.48496 * 109.47188 * 203.73574 * 16 14 12 19 19 H 1.48496 * 109.46949 * 323.73543 * 16 14 12 20 20 C 1.50700 * 109.46779 * 202.43722 * 10 8 7 21 21 C 1.38234 * 119.99828 * 112.26656 * 20 10 8 22 22 C 1.38245 * 119.99675 * 179.97438 * 21 20 10 23 23 C 1.38228 * 119.99975 * 359.95388 * 22 21 20 24 24 C 1.38237 * 120.00308 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99855 * 0.06917 * 24 23 22 26 26 H 1.09001 * 109.47567 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46936 * 299.99832 * 1 2 3 28 28 H 1.09001 * 109.47203 * 59.99545 * 1 2 3 29 29 H 1.09003 * 109.47129 * 239.99652 * 2 1 3 30 30 H 1.09001 * 109.47203 * 120.00455 * 2 1 3 31 31 H 1.08991 * 109.47591 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46659 * 300.00696 * 4 3 2 33 33 H 1.09001 * 109.46769 * 59.99876 * 4 3 2 34 34 H 1.09002 * 109.47098 * 299.99716 * 5 3 2 35 35 H 1.08994 * 109.47542 * 59.99693 * 5 3 2 36 36 H 1.09001 * 109.47269 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47303 * 60.00045 * 6 3 2 38 38 H 1.09001 * 109.47003 * 300.00230 * 6 3 2 39 39 H 0.97002 * 120.00172 * 359.97438 * 7 6 3 40 40 H 0.96994 * 120.00132 * 179.97438 * 15 14 12 41 41 H 1.07992 * 120.00341 * 359.97438 * 21 20 10 42 42 H 1.08004 * 119.99417 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.99490 * 179.72107 * 23 22 21 44 44 H 1.07997 * 119.99922 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4424 -0.0006 7 7 4.0584 2.8236 0.0000 8 6 5.3836 3.0698 -0.0010 9 8 6.1716 2.1480 -0.0018 10 6 5.8859 4.4906 -0.0009 11 1 5.2385 5.1049 -0.6267 12 6 5.8782 5.0261 1.4077 13 1 6.3978 4.4938 2.1906 14 6 5.2075 6.1956 1.6970 15 7 5.1327 6.6206 2.9393 16 14 4.4054 7.1763 0.3243 17 1 3.0621 6.6137 0.0338 18 1 4.2680 8.5941 0.7440 19 1 5.2483 7.1007 -0.8958 20 6 7.2910 4.5265 -0.5443 21 6 7.5469 5.1341 -1.7593 22 6 8.8360 5.1675 -2.2575 23 6 9.8692 4.5943 -1.5401 24 6 9.6136 3.9880 -0.3244 25 6 8.3244 3.9538 0.1733 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8938 3.1912 1.2495 32 1 0.4401 2.1636 1.2493 33 1 1.8935 1.6498 2.1392 34 1 1.8933 1.6499 -2.1392 35 1 0.4400 2.1638 -1.2492 36 1 1.8937 3.1913 -1.2495 37 1 3.9330 0.9287 -0.8909 38 1 3.9337 0.9284 0.8891 39 1 3.4281 3.5609 0.0003 40 1 4.6612 7.4435 3.1428 41 1 6.7398 5.5826 -2.3194 42 1 9.0358 5.6418 -3.2070 43 1 10.8756 4.6165 -1.9315 44 1 10.4208 3.5398 0.2358 45 1 8.1246 3.4798 1.1229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435887639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -55.849513 kcal Electronic energy + Delta-G solvation = -23572.005994 eV Core-core repulsion = 20359.572790 eV Total energy + Delta-G solvation = -3212.433204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09318 -39.77999 -38.71334 -35.50455 -34.80320 -33.37241 -31.62646 -30.97512 -29.56959 -28.20841 -27.70815 -25.53595 -24.09033 -23.35682 -22.34502 -21.04782 -19.60076 -19.12322 -18.00732 -17.66949 -16.81531 -16.50527 -16.12235 -15.82015 -15.64980 -15.39171 -15.25642 -14.81166 -14.55263 -14.48575 -14.25897 -14.09583 -13.73785 -13.42500 -13.06105 -12.99877 -12.89989 -12.80650 -12.75340 -12.68045 -12.06321 -12.02357 -11.92930 -11.72350 -11.55671 -11.41651 -11.39396 -11.37220 -10.91111 -10.56867 -9.93379 -9.64117 -9.37610 -8.36587 -6.45378 0.63412 0.70497 1.30595 1.37661 1.46273 1.89666 2.28462 2.47039 2.98820 3.15944 3.68772 3.83615 3.88528 4.06674 4.22541 4.27113 4.38180 4.39484 4.39674 4.41820 4.47120 4.62196 4.71067 4.75520 4.78714 4.83970 4.84799 4.89417 5.03369 5.07215 5.13525 5.17458 5.19920 5.23310 5.30332 5.32909 5.38605 5.51019 5.59404 5.64540 5.69769 5.74920 5.94917 6.19123 6.30954 6.57083 6.69400 7.18330 7.46037 8.78996 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.005478 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.554197 B = 5110.374125 C = 6182.023785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.068 4.068 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.131 3.869 7 N -0.720 5.720 8 C 0.525 3.475 9 O -0.590 6.590 10 C 0.035 3.965 11 H 0.073 0.927 12 C -0.504 4.504 13 H 0.028 0.972 14 C 0.029 3.971 15 N -0.932 5.932 16 Si 0.927 3.073 17 H -0.241 1.241 18 H -0.285 1.285 19 H -0.243 1.243 20 C -0.063 4.063 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.101 4.101 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.403 0.597 40 H 0.272 0.728 41 H 0.126 0.874 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.132 0.868 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -6.598 -11.552 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.069 4.069 4 C -0.202 4.202 5 C -0.200 4.200 6 C 0.007 3.993 7 N -0.372 5.372 8 C 0.314 3.686 9 O -0.471 6.471 10 C 0.013 3.987 11 H 0.091 0.909 12 C -0.542 4.542 13 H 0.046 0.954 14 C -0.171 4.171 15 N -0.570 5.570 16 Si 0.749 3.251 17 H -0.165 1.165 18 H -0.211 1.211 19 H -0.167 1.167 20 C -0.064 4.064 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.119 4.119 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.150 0.850 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.730 -7.131 -11.413 15.047 hybrid contribution -0.356 0.840 0.642 1.115 sum -7.087 -6.291 -10.771 14.347 Atomic orbital electron populations 1.21852 0.94204 1.02214 1.02500 1.21476 0.97250 0.93570 1.02284 1.20776 0.91610 0.97678 0.96819 1.21945 1.02135 0.99549 0.96605 1.21941 1.02231 0.99656 0.96194 1.21413 0.94632 0.82576 1.00655 1.45958 1.06562 1.09188 1.75497 1.21359 0.82269 0.92047 0.72955 1.90534 1.56514 1.47687 1.52330 1.18285 0.92215 0.90999 0.97204 0.90946 1.20471 1.33715 1.08732 0.91261 0.95354 1.25915 0.95568 0.97605 0.97962 1.70011 1.43034 1.23452 1.20508 0.86017 0.80687 0.78218 0.80188 1.16452 1.21088 1.16700 1.20043 0.95841 0.96504 0.94018 1.21274 0.98517 1.01277 0.95345 1.21378 0.91990 0.99985 1.00803 1.21366 1.00280 0.98839 0.94663 1.21353 0.95886 1.00685 0.97509 1.20843 0.93592 0.98697 0.98808 0.91958 0.92364 0.91647 0.91285 0.92262 0.94024 0.90045 0.93428 0.91996 0.90168 0.93481 0.92162 0.93928 0.76067 0.91918 0.85611 0.83080 0.83094 0.84991 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.21 71.98 0.66 -1.59 16 2 C -0.11 -2.04 4.99 30.59 0.15 -1.88 16 3 C -0.07 -1.59 0.56 -52.18 -0.03 -1.62 16 4 C -0.15 -3.58 7.95 71.98 0.57 -3.01 16 5 C -0.14 -2.90 7.95 71.98 0.57 -2.32 16 6 C 0.13 4.13 4.56 86.38 0.39 4.53 16 7 N -0.72 -27.06 4.96 -463.07 -2.30 -29.35 16 8 C 0.53 24.23 6.93 87.66 0.61 24.84 16 9 O -0.59 -30.29 15.23 -3.01 -0.05 -30.34 16 10 C 0.03 1.64 2.22 -13.03 -0.03 1.61 16 11 H 0.07 3.14 4.57 -2.39 -0.01 3.13 16 12 C -0.50 -28.20 8.24 25.60 0.21 -27.99 16 13 H 0.03 1.84 7.69 -2.91 -0.02 1.82 16 14 C 0.03 1.61 5.47 84.66 0.46 2.07 16 15 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16 16 Si 0.93 39.61 26.93 68.60 1.85 41.45 16 17 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.24 -9.68 6.81 99.48 0.68 -9.01 16 20 C -0.06 -2.89 4.53 -19.87 -0.09 -2.98 16 21 C -0.15 -5.60 9.67 22.27 0.22 -5.38 16 22 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 24 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 25 C -0.10 -4.68 8.05 22.27 0.18 -4.50 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 28 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 1.18 6.86 -2.39 -0.02 1.17 16 32 H 0.08 1.61 6.43 -2.39 -0.02 1.60 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.30 6.43 -2.39 -0.02 1.29 16 36 H 0.05 1.05 6.86 -2.39 -0.02 1.03 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.40 14.04 6.16 -92.71 -0.57 13.47 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.13 4.29 7.96 -2.91 -0.02 4.26 16 42 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 45 H 0.08 4.38 7.44 -2.91 -0.02 4.36 16 Total: -1.00 -69.70 355.30 4.73 -64.97 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.37 Total: 39.21 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.55 Total: -30.78 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.00 Total: -84.51 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.85 Total: 41.45 kcal Total: -69.70 4.73 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435887639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds