Wall clock time and date at job start Tue Mar 31 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46864 * 2 1 4 4 C 1.53002 * 109.47282 * 240.00197 * 2 1 3 5 5 C 1.53002 * 109.46776 * 120.00109 * 2 1 3 6 6 C 1.52991 * 109.46986 * 60.00003 * 5 2 1 7 7 N 1.46503 * 109.46962 * 179.97438 * 6 5 2 8 8 C 1.34779 * 120.00328 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99419 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00080 * 180.02562 * 8 7 6 11 11 H 1.09001 * 109.47295 * 299.99387 * 10 8 7 12 12 C 1.50696 * 109.47530 * 59.99483 * 10 8 7 13 13 H 1.07997 * 120.00260 * 235.33651 * 12 10 8 14 14 C 1.37879 * 119.99977 * 55.33425 * 12 10 8 15 15 N 1.31516 * 119.99735 * 1.97120 * 14 12 10 16 16 Si 1.86800 * 120.00111 * 181.96775 * 14 12 10 17 17 H 1.48500 * 109.47037 * 60.00267 * 16 14 12 18 18 H 1.48499 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47204 * 299.99860 * 16 14 12 20 20 C 1.50707 * 109.46942 * 179.97438 * 10 8 7 21 21 C 1.38230 * 120.00383 * 47.22241 * 20 10 8 22 22 C 1.38230 * 120.00043 * 180.02562 * 21 20 10 23 23 C 1.38229 * 120.00376 * 359.95097 * 22 21 20 24 24 C 1.38236 * 119.99772 * 359.97438 * 23 22 21 25 25 C 1.38235 * 120.00185 * 0.06932 * 24 23 22 26 26 H 1.09000 * 109.47565 * 299.99929 * 1 2 3 27 27 H 1.09003 * 109.46965 * 59.99949 * 1 2 3 28 28 H 1.08997 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47091 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47713 * 299.99618 * 3 2 1 31 31 H 1.08997 * 109.47228 * 60.00164 * 3 2 1 32 32 H 1.08997 * 109.46827 * 300.00317 * 4 2 1 33 33 H 1.08994 * 109.46988 * 59.99964 * 4 2 1 34 34 H 1.08991 * 109.47138 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46980 * 299.99514 * 5 2 1 36 36 H 1.09001 * 109.46550 * 180.02562 * 5 2 1 37 37 H 1.09006 * 109.47405 * 60.00385 * 6 5 2 38 38 H 1.09001 * 109.47667 * 299.99550 * 6 5 2 39 39 H 0.97004 * 120.00070 * 0.02562 * 7 6 5 40 40 H 0.97003 * 120.00319 * 179.97438 * 15 14 12 41 41 H 1.08002 * 119.99547 * 359.97438 * 21 20 10 42 42 H 1.08001 * 119.99875 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00421 * 179.72884 * 23 22 21 44 44 H 1.07996 * 120.00326 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00212 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2493 6 6 1.5299 -2.1637 1.2492 7 7 2.0186 -2.8545 2.4451 8 6 1.6936 -4.1450 2.6581 9 8 0.9960 -4.7343 1.8599 10 6 2.1959 -4.8554 3.8885 11 1 3.2859 -4.8551 3.8888 12 6 1.6931 -4.1455 5.1190 13 1 2.3917 -3.8013 5.8672 14 6 0.3411 -3.9352 5.2896 15 7 -0.5125 -4.3884 4.3975 16 14 -0.2781 -3.0069 6.7876 17 1 0.3015 -1.6397 6.7972 18 1 -1.7594 -2.9156 6.7360 19 1 0.1313 -3.7268 8.0202 20 6 1.6936 -6.2763 3.8884 21 6 1.7974 -7.0461 2.7450 22 6 1.3362 -8.3492 2.7448 23 6 0.7721 -8.8829 3.8883 24 6 0.6696 -8.1136 5.0323 25 6 1.1300 -6.8102 5.0323 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2490 35 1 1.6766 -0.2074 2.1392 36 1 3.1299 -0.7209 1.2495 37 1 1.8933 -2.6776 0.3592 38 1 0.4399 -2.1637 1.2492 39 1 2.5763 -2.3831 3.0837 40 1 -1.4637 -4.2408 4.5176 41 1 2.2382 -6.6291 1.8515 42 1 1.4170 -8.9505 1.8513 43 1 0.4077 -9.8996 3.8869 44 1 0.2285 -8.5304 5.9256 45 1 1.0496 -6.2090 5.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533318538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:14 Heat of formation + Delta-G solvation = -36.919054 kcal Electronic energy + Delta-G solvation = -23638.203143 eV Core-core repulsion = 20426.590825 eV Total energy + Delta-G solvation = -3211.612318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.99186 -38.07732 -37.06316 -33.58833 -33.42740 -30.78088 -29.63141 -28.93261 -27.29004 -27.22149 -26.94954 -24.00045 -22.61975 -21.21310 -20.40570 -19.28121 -18.40623 -16.71919 -15.87084 -15.34722 -15.16507 -14.93431 -14.78000 -14.17079 -14.05599 -13.89350 -13.56359 -13.39715 -12.96018 -12.48244 -12.28057 -12.19778 -12.08897 -11.89679 -11.74126 -11.63773 -11.56381 -11.26492 -11.00831 -10.92947 -10.76834 -10.58584 -10.45575 -10.35571 -10.33197 -10.01227 -9.61998 -9.33651 -8.67394 -8.23705 -7.86777 -7.64431 -7.34934 -6.09974 -4.26404 2.59327 2.65821 3.21809 3.29558 3.30224 4.18721 4.29291 4.46079 4.85880 4.86212 4.93284 5.09000 5.17914 5.48175 5.51109 5.58784 5.69270 5.73627 5.80659 5.89068 5.89600 5.91295 6.01642 6.03321 6.09516 6.12889 6.22954 6.28085 6.31657 6.44555 6.52580 6.59669 6.68031 6.72492 6.86612 6.96417 7.18104 7.26188 7.58451 7.64575 7.69639 7.72033 7.84550 8.21188 8.32072 8.67061 8.88065 9.39823 9.78453 10.90301 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.005154 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.787498 B = 5431.626651 C = 6669.891841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.120 4.120 6 C 0.125 3.875 7 N -0.738 5.738 8 C 0.550 3.450 9 O -0.550 6.550 10 C 0.055 3.945 11 H 0.055 0.945 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.075 3.925 15 N -0.841 5.841 16 Si 0.886 3.114 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.013 4.013 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.065 4.065 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.394 0.606 40 H 0.265 0.735 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 5.985 -5.640 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.157 4.157 6 C 0.001 3.999 7 N -0.391 5.391 8 C 0.339 3.661 9 O -0.426 6.426 10 C 0.034 3.966 11 H 0.073 0.927 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.134 4.134 15 N -0.473 5.473 16 Si 0.714 3.286 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.014 4.014 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.167 4.167 25 C -0.083 4.083 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.227 0.773 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.269 5.526 -6.296 9.402 hybrid contribution -0.581 0.854 1.089 1.501 sum 3.689 6.380 -5.206 9.023 Atomic orbital electron populations 1.21955 0.94543 1.02517 1.01302 1.20465 0.95826 0.95100 0.95202 1.21861 1.00787 0.95526 1.01502 1.21947 1.00807 1.00838 0.96604 1.21834 1.00660 0.95592 0.97655 1.21199 0.99176 0.90771 0.88801 1.45820 1.55546 1.13126 1.24569 1.20966 0.78430 0.80740 0.85996 1.90528 1.37607 1.66638 1.47858 1.17885 0.95531 0.89915 0.93244 0.92661 1.20647 0.92177 1.40121 1.04893 0.91640 1.25051 0.97089 0.94985 0.96226 1.70070 1.02570 1.41429 1.33275 0.86742 0.77860 0.80606 0.83440 1.20129 1.21329 1.19980 1.19826 0.94836 0.94568 0.92155 1.20969 1.00096 0.93137 0.97634 1.20814 1.02164 0.96054 0.97261 1.20762 1.02625 0.98843 0.94136 1.20986 1.02700 0.95513 0.97461 1.21150 0.94721 0.93016 0.99447 0.92692 0.93075 0.91831 0.92788 0.92887 0.92731 0.91936 0.93029 0.92786 0.91459 0.91711 0.92805 0.92316 0.77286 0.92508 0.87538 0.88151 0.88256 0.88091 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.12 37.16 0.30 -1.47 16 2 C -0.07 -0.75 0.80 -154.51 -0.12 -0.88 16 3 C -0.14 -1.37 8.47 37.16 0.31 -1.06 16 4 C -0.14 -1.60 8.12 37.16 0.30 -1.30 16 5 C -0.12 -1.59 4.38 -26.73 -0.12 -1.71 16 6 C 0.12 2.16 4.97 -4.04 -0.02 2.14 16 7 N -0.74 -14.70 5.46 -60.30 -0.33 -15.03 16 8 C 0.55 13.12 5.45 -10.99 -0.06 13.06 16 9 O -0.55 -14.82 13.95 5.55 0.08 -14.74 16 10 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 11 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.54 -13.23 7.12 -34.44 -0.25 -13.47 16 13 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.89 3.99 -17.82 -0.07 1.82 16 15 N -0.84 -23.12 10.89 55.43 0.60 -22.52 16 16 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.01 -0.31 4.52 -104.62 -0.47 -0.78 16 21 C -0.10 -2.31 8.21 -39.59 -0.33 -2.64 16 22 C -0.14 -3.03 10.05 -39.59 -0.40 -3.43 16 23 C -0.15 -2.94 10.05 -39.59 -0.40 -3.33 16 24 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16 25 C -0.07 -1.55 8.20 -39.58 -0.32 -1.88 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 38 H 0.06 1.16 6.43 -51.93 -0.33 0.82 16 39 H 0.39 7.14 8.36 -40.82 -0.34 6.79 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.11 2.44 7.01 -52.49 -0.37 2.07 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.13 3.12 6.02 -52.49 -0.32 2.80 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -29.38 355.25 -9.01 -38.39 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -7.40 Total: 11.08 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.29 Total: -17.43 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.27 Total: -37.55 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.08 Total: -14.74 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.38 -9.01 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533318538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.474 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds