Wall clock time and date at job start Tue Mar 31 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46864 * 2 1 4 4 C 1.53002 * 109.47282 * 240.00197 * 2 1 3 5 5 C 1.53002 * 109.46776 * 120.00109 * 2 1 3 6 6 C 1.52991 * 109.46986 * 60.00003 * 5 2 1 7 7 N 1.46503 * 109.46962 * 179.97438 * 6 5 2 8 8 C 1.34779 * 120.00328 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99419 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00080 * 180.02562 * 8 7 6 11 11 H 1.09001 * 109.47295 * 299.99387 * 10 8 7 12 12 C 1.50696 * 109.47530 * 59.99483 * 10 8 7 13 13 H 1.07997 * 120.00260 * 235.33651 * 12 10 8 14 14 C 1.37879 * 119.99977 * 55.33425 * 12 10 8 15 15 N 1.31516 * 119.99735 * 1.97120 * 14 12 10 16 16 Si 1.86800 * 120.00111 * 181.96775 * 14 12 10 17 17 H 1.48500 * 109.47037 * 60.00267 * 16 14 12 18 18 H 1.48499 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47204 * 299.99860 * 16 14 12 20 20 C 1.50707 * 109.46942 * 179.97438 * 10 8 7 21 21 C 1.38230 * 120.00383 * 47.22241 * 20 10 8 22 22 C 1.38230 * 120.00043 * 180.02562 * 21 20 10 23 23 C 1.38229 * 120.00376 * 359.95097 * 22 21 20 24 24 C 1.38236 * 119.99772 * 359.97438 * 23 22 21 25 25 C 1.38235 * 120.00185 * 0.06932 * 24 23 22 26 26 H 1.09000 * 109.47565 * 299.99929 * 1 2 3 27 27 H 1.09003 * 109.46965 * 59.99949 * 1 2 3 28 28 H 1.08997 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47091 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47713 * 299.99618 * 3 2 1 31 31 H 1.08997 * 109.47228 * 60.00164 * 3 2 1 32 32 H 1.08997 * 109.46827 * 300.00317 * 4 2 1 33 33 H 1.08994 * 109.46988 * 59.99964 * 4 2 1 34 34 H 1.08991 * 109.47138 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46980 * 299.99514 * 5 2 1 36 36 H 1.09001 * 109.46550 * 180.02562 * 5 2 1 37 37 H 1.09006 * 109.47405 * 60.00385 * 6 5 2 38 38 H 1.09001 * 109.47667 * 299.99550 * 6 5 2 39 39 H 0.97004 * 120.00070 * 0.02562 * 7 6 5 40 40 H 0.97003 * 120.00319 * 179.97438 * 15 14 12 41 41 H 1.08002 * 119.99547 * 359.97438 * 21 20 10 42 42 H 1.08001 * 119.99875 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.00421 * 179.72884 * 23 22 21 44 44 H 1.07996 * 120.00326 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00212 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2493 6 6 1.5299 -2.1637 1.2492 7 7 2.0186 -2.8545 2.4451 8 6 1.6936 -4.1450 2.6581 9 8 0.9960 -4.7343 1.8599 10 6 2.1959 -4.8554 3.8885 11 1 3.2859 -4.8551 3.8888 12 6 1.6931 -4.1455 5.1190 13 1 2.3917 -3.8013 5.8672 14 6 0.3411 -3.9352 5.2896 15 7 -0.5125 -4.3884 4.3975 16 14 -0.2781 -3.0069 6.7876 17 1 0.3015 -1.6397 6.7972 18 1 -1.7594 -2.9156 6.7360 19 1 0.1313 -3.7268 8.0202 20 6 1.6936 -6.2763 3.8884 21 6 1.7974 -7.0461 2.7450 22 6 1.3362 -8.3492 2.7448 23 6 0.7721 -8.8829 3.8883 24 6 0.6696 -8.1136 5.0323 25 6 1.1300 -6.8102 5.0323 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2490 35 1 1.6766 -0.2074 2.1392 36 1 3.1299 -0.7209 1.2495 37 1 1.8933 -2.6776 0.3592 38 1 0.4399 -2.1637 1.2492 39 1 2.5763 -2.3831 3.0837 40 1 -1.4637 -4.2408 4.5176 41 1 2.2382 -6.6291 1.8515 42 1 1.4170 -8.9505 1.8513 43 1 0.4077 -9.8996 3.8869 44 1 0.2285 -8.5304 5.9256 45 1 1.0496 -6.2090 5.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533318538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:13 Heat of formation + Delta-G solvation = -52.422445 kcal Electronic energy + Delta-G solvation = -23638.875420 eV Core-core repulsion = 20426.590825 eV Total energy + Delta-G solvation = -3212.284595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72761 -39.42059 -38.55931 -35.46324 -35.05031 -32.63545 -31.34535 -30.34534 -28.67618 -28.17371 -28.11750 -25.83271 -24.01013 -22.93409 -22.10486 -20.99945 -19.53050 -18.54578 -17.51204 -17.04326 -16.73707 -16.67248 -16.21042 -15.65043 -15.37893 -15.14839 -15.11180 -14.77329 -14.46655 -14.08227 -13.93351 -13.77285 -13.58775 -13.28423 -13.00995 -12.82851 -12.71036 -12.60718 -12.57503 -12.54401 -12.28185 -12.14663 -11.77702 -11.59140 -11.47814 -11.40039 -11.36531 -11.15137 -10.62291 -10.12654 -9.58113 -9.37109 -9.08773 -8.05742 -6.25908 0.88696 0.94055 1.42809 1.45209 1.50965 2.34668 2.47501 2.83127 3.21255 3.36624 3.84761 3.90088 3.94401 4.33716 4.35584 4.36467 4.39032 4.50952 4.62253 4.63285 4.69894 4.77800 4.79296 4.86509 4.93505 5.01105 5.04080 5.06920 5.08329 5.11819 5.16791 5.21756 5.23803 5.38755 5.46653 5.51631 5.54036 5.55588 5.71043 5.89492 5.93916 5.99002 6.04283 6.43964 6.53947 6.77357 7.13724 7.42914 7.97189 8.92853 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015853 B = 0.005154 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.787498 B = 5431.626651 C = 6669.891841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.109 4.109 6 C 0.129 3.871 7 N -0.730 5.730 8 C 0.547 3.453 9 O -0.587 6.587 10 C 0.045 3.955 11 H 0.067 0.933 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.039 3.961 15 N -0.874 5.874 16 Si 0.940 3.060 17 H -0.266 1.266 18 H -0.299 1.299 19 H -0.268 1.268 20 C -0.035 4.035 21 C -0.119 4.119 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.152 4.152 25 C -0.088 4.088 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.403 0.597 40 H 0.254 0.746 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 6.522 -5.558 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.147 4.147 6 C 0.006 3.994 7 N -0.381 5.381 8 C 0.336 3.664 9 O -0.467 6.467 10 C 0.024 3.976 11 H 0.085 0.915 12 C -0.572 4.572 13 H 0.090 0.910 14 C -0.165 4.165 15 N -0.508 5.508 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.225 1.225 19 H -0.193 1.193 20 C -0.036 4.036 21 C -0.137 4.137 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.170 4.170 25 C -0.106 4.106 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.238 0.762 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.144 0.856 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.066 6.102 -6.194 10.062 hybrid contribution -0.781 0.632 1.038 1.445 sum 4.285 6.734 -5.155 9.502 Atomic orbital electron populations 1.21951 0.95292 1.01061 1.01990 1.20476 0.95212 0.96353 0.94374 1.21812 1.01401 0.93764 1.02196 1.21929 1.01408 0.99714 0.96980 1.21789 1.01552 0.92645 0.98707 1.21255 0.97491 0.93165 0.87537 1.45770 1.54810 1.12194 1.25373 1.21024 0.77988 0.81751 0.85656 1.90493 1.39384 1.67752 1.49072 1.18015 0.96272 0.90225 0.93065 0.91463 1.20861 0.92203 1.39116 1.05022 0.90971 1.25595 0.97247 0.95588 0.98117 1.70249 1.02050 1.43380 1.35164 0.85878 0.76543 0.79970 0.80960 1.19134 1.22527 1.19254 1.19944 0.95872 0.94860 0.92897 1.21034 1.01220 0.94366 0.97082 1.21191 1.01056 0.95407 0.98816 1.21175 1.01303 1.00393 0.93086 1.21318 1.01924 0.94715 0.99068 1.21134 0.96298 0.94291 0.98853 0.93033 0.91360 0.94342 0.91780 0.91627 0.92670 0.93966 0.91544 0.91794 0.91686 0.89995 0.93084 0.95174 0.76192 0.93638 0.88383 0.85269 0.84384 0.85557 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.12 71.98 0.58 -2.90 16 2 C -0.06 -1.38 0.80 -52.18 -0.04 -1.42 16 3 C -0.13 -2.29 8.47 71.98 0.61 -1.68 16 4 C -0.14 -2.98 8.12 71.98 0.58 -2.39 16 5 C -0.11 -2.80 4.38 30.59 0.13 -2.67 16 6 C 0.13 4.58 4.97 86.38 0.43 5.01 16 7 N -0.73 -29.50 5.46 -463.06 -2.53 -32.02 16 8 C 0.55 26.75 5.45 87.66 0.48 27.23 16 9 O -0.59 -32.82 13.95 -3.04 -0.04 -32.86 16 10 C 0.05 2.19 2.78 -13.03 -0.04 2.16 16 11 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 12 C -0.53 -26.25 7.12 25.60 0.18 -26.07 16 13 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 14 C 0.04 1.99 3.99 84.65 0.34 2.33 16 15 N -0.87 -49.25 10.89 21.45 0.23 -49.01 16 16 Si 0.94 40.98 29.54 68.60 2.03 43.01 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 C -0.03 -1.71 4.52 -19.86 -0.09 -1.80 16 21 C -0.12 -5.54 8.21 22.27 0.18 -5.36 16 22 C -0.15 -5.94 10.05 22.27 0.22 -5.71 16 23 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 24 C -0.15 -6.29 10.05 22.27 0.22 -6.06 16 25 C -0.09 -4.19 8.20 22.27 0.18 -4.00 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.10 6.43 -2.39 -0.02 1.08 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 1.04 6.43 -2.39 -0.02 1.03 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.84 6.43 -2.38 -0.02 1.82 16 38 H 0.03 1.25 6.43 -2.39 -0.02 1.23 16 39 H 0.40 14.54 8.36 -92.70 -0.77 13.76 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.10 4.63 7.01 -2.91 -0.02 4.60 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 45 H 0.11 5.56 6.02 -2.91 -0.02 5.54 16 Total: -1.00 -64.18 355.25 4.09 -60.09 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.19 Total: 39.33 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.21 Total: -28.52 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.29 Total: -81.04 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.04 Total: -32.86 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -64.18 4.09 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533318538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.665 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds