Wall clock time and date at job start Tue Mar 31 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.53000 * 109.46732 * 240.00301 * 2 1 3 5 5 C 1.53000 * 109.46988 * 120.00222 * 2 1 3 6 6 C 1.52999 * 109.47290 * 60.00295 * 5 2 1 7 7 N 1.46495 * 109.47243 * 179.97438 * 6 5 2 8 8 C 1.34778 * 120.00321 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99767 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00150 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.47276 * 60.00374 * 10 8 7 12 12 C 1.50701 * 109.47254 * 300.00433 * 10 8 7 13 13 H 1.07998 * 119.99934 * 124.62155 * 12 10 8 14 14 C 1.37879 * 120.00066 * 304.34159 * 12 10 8 15 15 N 1.31521 * 120.00057 * 6.38614 * 14 12 10 16 16 Si 1.86795 * 120.00243 * 186.38187 * 14 12 10 17 17 H 1.48502 * 109.47294 * 60.00126 * 16 14 12 18 18 H 1.48498 * 109.47568 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47204 * 300.00545 * 16 14 12 20 20 C 1.50697 * 109.47039 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00283 * 313.11562 * 20 10 8 22 22 C 1.38232 * 120.00497 * 179.81076 * 21 20 10 23 23 C 1.38237 * 119.99539 * 0.39808 * 22 21 20 24 24 C 1.38230 * 120.00431 * 359.85241 * 23 22 21 25 25 C 1.38237 * 120.00167 * 133.38639 * 20 10 8 26 26 H 1.09002 * 109.47233 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.47615 * 59.99782 * 1 2 3 28 28 H 1.09004 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47676 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47219 * 300.00513 * 3 2 1 31 31 H 1.09002 * 109.46797 * 59.99942 * 3 2 1 32 32 H 1.09004 * 109.47019 * 299.99568 * 4 2 1 33 33 H 1.08991 * 109.47369 * 60.00058 * 4 2 1 34 34 H 1.09007 * 109.46956 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47424 * 299.99621 * 5 2 1 36 36 H 1.09008 * 109.46687 * 179.97438 * 5 2 1 37 37 H 1.08999 * 109.47438 * 59.99334 * 6 5 2 38 38 H 1.09008 * 109.46849 * 299.99403 * 6 5 2 39 39 H 0.97009 * 120.00194 * 359.97438 * 7 6 5 40 40 H 0.96991 * 120.00161 * 179.97438 * 15 14 12 41 41 H 1.08010 * 119.99544 * 359.97438 * 21 20 10 42 42 H 1.08001 * 120.00303 * 180.22770 * 22 21 20 43 43 H 1.08005 * 119.99967 * 179.83335 * 23 22 21 44 44 H 1.08006 * 120.00374 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00196 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0188 -2.8546 2.4450 8 6 1.6930 -4.1449 2.6584 9 8 0.9954 -4.7342 1.8603 10 6 2.1963 -4.8556 3.8883 11 1 1.8340 -4.3418 4.7787 12 6 3.7033 -4.8561 3.8868 13 1 4.2442 -4.4556 4.7314 14 6 4.3915 -5.3732 2.8097 15 7 3.7388 -5.7503 1.7319 16 14 6.2508 -5.5381 2.8812 17 1 6.6257 -6.4298 4.0080 18 1 6.7459 -6.1162 1.6061 19 1 6.8590 -4.1990 3.0862 20 6 1.6939 -6.2764 3.8883 21 6 0.3640 -6.5394 3.6176 22 6 -0.0960 -7.8429 3.6137 23 6 0.7722 -8.8829 3.8886 24 6 2.1009 -8.6197 4.1644 25 6 2.5617 -7.3164 4.1644 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 1.6767 -0.2075 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 1.8933 -2.6776 0.3591 38 1 0.4399 -2.1638 1.2492 39 1 2.5771 -2.3834 3.0832 40 1 4.2230 -6.1137 0.9741 41 1 -0.3150 -5.7264 3.4066 42 1 -1.1342 -8.0485 3.3987 43 1 0.4122 -9.9012 3.8883 44 1 2.7791 -9.4323 4.3796 45 1 3.5999 -7.1108 4.3798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533318539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:17 Heat of formation + Delta-G solvation = -36.915301 kcal Electronic energy + Delta-G solvation = -23636.146605 eV Core-core repulsion = 20424.534450 eV Total energy + Delta-G solvation = -3211.612155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.97544 -38.07560 -37.05311 -33.57643 -33.38672 -30.80323 -29.67905 -28.90852 -27.27575 -27.20408 -26.94302 -24.01167 -22.60109 -21.23979 -20.41464 -19.25620 -18.38657 -16.72325 -15.87779 -15.33213 -15.15024 -14.91685 -14.77310 -14.15515 -14.04344 -13.88722 -13.59069 -13.38013 -12.95594 -12.47527 -12.29748 -12.20090 -12.10648 -11.89090 -11.70793 -11.62136 -11.54107 -11.29311 -10.97647 -10.92048 -10.76864 -10.56681 -10.45429 -10.34288 -10.31065 -10.01828 -9.64202 -9.35096 -8.70293 -8.18992 -7.81676 -7.67930 -7.38472 -6.11792 -4.25627 2.55532 2.60891 3.21912 3.29891 3.30554 4.21437 4.30742 4.51105 4.87603 4.88079 4.93972 5.06407 5.17942 5.50342 5.53068 5.60606 5.71150 5.75494 5.82126 5.86235 5.91560 5.92692 5.98676 6.05057 6.06260 6.14560 6.24704 6.30463 6.33509 6.42723 6.53973 6.62605 6.67739 6.70462 6.84415 6.96313 7.14842 7.22389 7.55392 7.63941 7.70608 7.72101 7.82578 8.17368 8.29365 8.68616 8.91267 9.40165 9.83707 10.89927 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.005122 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.279906 B = 5465.566688 C = 6691.506504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.119 4.119 6 C 0.126 3.874 7 N -0.737 5.737 8 C 0.554 3.446 9 O -0.551 6.551 10 C 0.055 3.945 11 H 0.056 0.944 12 C -0.542 4.542 13 H 0.065 0.935 14 C 0.077 3.923 15 N -0.841 5.841 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.014 4.014 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.075 4.075 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.393 0.607 40 H 0.265 0.735 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 8.655 -0.332 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.157 4.157 6 C 0.002 3.998 7 N -0.389 5.389 8 C 0.343 3.657 9 O -0.428 6.428 10 C 0.034 3.966 11 H 0.073 0.927 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.132 4.132 15 N -0.473 5.473 16 Si 0.712 3.288 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.015 4.015 21 C -0.117 4.117 22 C -0.161 4.161 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.092 4.092 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.226 0.774 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.035 8.123 -1.140 9.142 hybrid contribution 1.494 -0.003 -0.105 1.498 sum -2.541 8.121 -1.246 8.600 Atomic orbital electron populations 1.21949 0.94692 1.02323 1.01227 1.20463 0.95654 0.95092 0.95378 1.21863 1.00941 0.95493 1.01373 1.21953 1.01059 1.00879 0.96404 1.21834 1.01137 0.95442 0.97305 1.21183 0.98048 0.90816 0.89800 1.45772 1.55392 1.13073 1.24696 1.20865 0.76777 0.79685 0.88393 1.90514 1.39354 1.65102 1.47859 1.17884 0.97097 0.89633 0.92022 0.92654 1.20644 0.88602 1.44178 1.04494 0.91651 1.25041 0.98147 0.94705 0.95262 1.70024 1.35377 1.38288 1.03661 0.86766 0.85886 0.78602 0.77530 1.19902 1.21311 1.20154 1.19876 0.91507 0.96349 0.93811 1.20997 0.96191 0.95759 0.98761 1.20841 0.98484 0.93448 1.03371 1.20778 0.94298 0.97627 1.03677 1.20999 0.95269 0.96817 1.03449 1.21195 1.00188 0.91013 0.96849 0.92808 0.93050 0.91926 0.92732 0.92912 0.92801 0.91812 0.93104 0.92698 0.91768 0.91472 0.92283 0.92909 0.77378 0.92463 0.87384 0.88051 0.88169 0.87998 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 2 C -0.07 -0.76 0.80 -154.51 -0.12 -0.88 16 3 C -0.14 -1.39 8.47 37.16 0.31 -1.07 16 4 C -0.15 -1.79 8.12 37.16 0.30 -1.49 16 5 C -0.12 -1.60 4.38 -26.73 -0.12 -1.72 16 6 C 0.13 2.20 4.97 -4.04 -0.02 2.18 16 7 N -0.74 -14.79 5.45 -60.30 -0.33 -15.12 16 8 C 0.55 13.26 5.28 -10.99 -0.06 13.20 16 9 O -0.55 -14.90 13.86 5.56 0.08 -14.82 16 10 C 0.05 1.30 2.78 -94.08 -0.26 1.04 16 11 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 12 C -0.54 -13.27 7.11 -34.44 -0.24 -13.52 16 13 H 0.07 1.55 7.82 -52.49 -0.41 1.14 16 14 C 0.08 1.94 3.90 -17.82 -0.07 1.87 16 15 N -0.84 -23.13 11.11 55.43 0.62 -22.52 16 16 Si 0.89 19.94 29.54 -169.99 -5.02 14.91 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.01 -0.35 4.63 -104.62 -0.48 -0.83 16 21 C -0.10 -2.27 8.21 -39.58 -0.32 -2.60 16 22 C -0.14 -2.97 10.05 -39.58 -0.40 -3.37 16 23 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 24 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 25 C -0.07 -1.76 8.46 -39.58 -0.33 -2.09 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.89 6.43 -51.93 -0.33 0.55 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.06 1.18 6.43 -51.93 -0.33 0.84 16 38 H 0.05 0.93 6.43 -51.92 -0.33 0.60 16 39 H 0.39 7.20 8.36 -40.82 -0.34 6.86 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.11 2.46 6.99 -52.48 -0.37 2.10 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.13 3.09 6.05 -52.48 -0.32 2.78 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -29.37 355.49 -9.02 -38.38 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.40 Total: 11.20 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.31 Total: -17.40 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.29 Total: -37.64 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.82 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.37 -9.02 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533318539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.468 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds