Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.53000 * 109.46732 * 240.00301 * 2 1 3 5 5 C 1.53000 * 109.46988 * 120.00222 * 2 1 3 6 6 C 1.52999 * 109.47290 * 60.00295 * 5 2 1 7 7 N 1.46495 * 109.47243 * 179.97438 * 6 5 2 8 8 C 1.34778 * 120.00321 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99767 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00150 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.47276 * 60.00374 * 10 8 7 12 12 C 1.50701 * 109.47254 * 300.00433 * 10 8 7 13 13 H 1.07998 * 119.99934 * 124.62155 * 12 10 8 14 14 C 1.37879 * 120.00066 * 304.34159 * 12 10 8 15 15 N 1.31521 * 120.00057 * 6.38614 * 14 12 10 16 16 Si 1.86795 * 120.00243 * 186.38187 * 14 12 10 17 17 H 1.48502 * 109.47294 * 60.00126 * 16 14 12 18 18 H 1.48498 * 109.47568 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47204 * 300.00545 * 16 14 12 20 20 C 1.50697 * 109.47039 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00283 * 313.11562 * 20 10 8 22 22 C 1.38232 * 120.00497 * 179.81076 * 21 20 10 23 23 C 1.38237 * 119.99539 * 0.39808 * 22 21 20 24 24 C 1.38230 * 120.00431 * 359.85241 * 23 22 21 25 25 C 1.38237 * 120.00167 * 133.38639 * 20 10 8 26 26 H 1.09002 * 109.47233 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.47615 * 59.99782 * 1 2 3 28 28 H 1.09004 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47676 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47219 * 300.00513 * 3 2 1 31 31 H 1.09002 * 109.46797 * 59.99942 * 3 2 1 32 32 H 1.09004 * 109.47019 * 299.99568 * 4 2 1 33 33 H 1.08991 * 109.47369 * 60.00058 * 4 2 1 34 34 H 1.09007 * 109.46956 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47424 * 299.99621 * 5 2 1 36 36 H 1.09008 * 109.46687 * 179.97438 * 5 2 1 37 37 H 1.08999 * 109.47438 * 59.99334 * 6 5 2 38 38 H 1.09008 * 109.46849 * 299.99403 * 6 5 2 39 39 H 0.97009 * 120.00194 * 359.97438 * 7 6 5 40 40 H 0.96991 * 120.00161 * 179.97438 * 15 14 12 41 41 H 1.08010 * 119.99544 * 359.97438 * 21 20 10 42 42 H 1.08001 * 120.00303 * 180.22770 * 22 21 20 43 43 H 1.08005 * 119.99967 * 179.83335 * 23 22 21 44 44 H 1.08006 * 120.00374 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00196 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 7 2.0188 -2.8546 2.4450 8 6 1.6930 -4.1449 2.6584 9 8 0.9954 -4.7342 1.8603 10 6 2.1963 -4.8556 3.8883 11 1 1.8340 -4.3418 4.7787 12 6 3.7033 -4.8561 3.8868 13 1 4.2442 -4.4556 4.7314 14 6 4.3915 -5.3732 2.8097 15 7 3.7388 -5.7503 1.7319 16 14 6.2508 -5.5381 2.8812 17 1 6.6257 -6.4298 4.0080 18 1 6.7459 -6.1162 1.6061 19 1 6.8590 -4.1990 3.0862 20 6 1.6939 -6.2764 3.8883 21 6 0.3640 -6.5394 3.6176 22 6 -0.0960 -7.8429 3.6137 23 6 0.7722 -8.8829 3.8886 24 6 2.1009 -8.6197 4.1644 25 6 2.5617 -7.3164 4.1644 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 1.6767 -0.2075 2.1392 36 1 3.1300 -0.7217 1.2489 37 1 1.8933 -2.6776 0.3591 38 1 0.4399 -2.1638 1.2492 39 1 2.5771 -2.3834 3.0832 40 1 4.2230 -6.1137 0.9741 41 1 -0.3150 -5.7264 3.4066 42 1 -1.1342 -8.0485 3.3987 43 1 0.4122 -9.9012 3.8883 44 1 2.7791 -9.4323 4.3796 45 1 3.5999 -7.1108 4.3798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533318539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -52.431807 kcal Electronic energy + Delta-G solvation = -23636.819451 eV Core-core repulsion = 20424.534450 eV Total energy + Delta-G solvation = -3212.285001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71287 -39.42205 -38.54897 -35.45078 -35.02074 -32.65501 -31.37845 -30.33003 -28.66939 -28.16849 -28.11242 -25.84730 -23.99887 -22.94750 -22.10784 -20.97924 -19.52277 -18.55217 -17.51893 -17.03496 -16.71684 -16.67354 -16.18886 -15.65531 -15.39245 -15.14341 -15.10529 -14.76164 -14.46767 -14.08045 -13.99413 -13.71922 -13.59146 -13.27451 -13.03290 -12.81615 -12.69548 -12.59835 -12.57630 -12.54065 -12.28771 -12.13571 -11.77311 -11.58571 -11.47839 -11.40566 -11.36748 -11.16089 -10.65429 -10.08218 -9.54255 -9.39697 -9.11054 -8.08041 -6.25385 0.86259 0.90557 1.42296 1.45373 1.50822 2.36200 2.49918 2.86942 3.20153 3.34788 3.85685 3.90716 3.95093 4.32828 4.34911 4.36457 4.40074 4.49161 4.62629 4.63963 4.69355 4.78287 4.79804 4.86877 4.93869 4.99948 5.03898 5.07556 5.08555 5.12473 5.14707 5.22210 5.24875 5.39153 5.44673 5.52324 5.53039 5.54529 5.70747 5.87583 5.92527 5.97446 6.07353 6.41539 6.51567 6.77208 7.16858 7.42939 8.01631 8.92150 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.005122 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.279906 B = 5465.566688 C = 6691.506504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.145 4.145 5 C -0.109 4.109 6 C 0.131 3.869 7 N -0.729 5.729 8 C 0.550 3.450 9 O -0.588 6.588 10 C 0.045 3.955 11 H 0.067 0.933 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.042 3.958 15 N -0.875 5.875 16 Si 0.938 3.062 17 H -0.267 1.267 18 H -0.298 1.298 19 H -0.267 1.267 20 C -0.037 4.037 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.097 4.097 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.402 0.598 40 H 0.255 0.745 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.128 0.872 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 9.283 0.220 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.192 4.192 4 C -0.202 4.202 5 C -0.146 4.146 6 C 0.007 3.993 7 N -0.381 5.381 8 C 0.340 3.660 9 O -0.469 6.469 10 C 0.024 3.976 11 H 0.085 0.915 12 C -0.573 4.573 13 H 0.090 0.910 14 C -0.163 4.163 15 N -0.509 5.509 16 Si 0.765 3.235 17 H -0.192 1.192 18 H -0.225 1.225 19 H -0.192 1.192 20 C -0.038 4.038 21 C -0.136 4.136 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.168 4.168 25 C -0.115 4.115 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.237 0.763 40 H 0.064 0.936 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.952 8.795 -0.554 9.658 hybrid contribution 1.416 -0.218 -0.247 1.454 sum -2.536 8.577 -0.801 8.980 Atomic orbital electron populations 1.21930 0.94214 1.01366 1.02506 1.20474 0.96026 0.96096 0.93812 1.21813 1.00977 0.93821 1.02551 1.21947 1.00799 0.99733 0.97771 1.21786 1.00852 0.92773 0.99234 1.21229 0.97828 0.92783 0.87469 1.45730 1.54690 1.12219 1.25439 1.20941 0.76386 0.80595 0.88096 1.90479 1.41138 1.66243 1.48997 1.18012 0.96889 0.90254 0.92462 0.91498 1.20856 0.89164 1.43073 1.04203 0.91013 1.25579 1.01405 0.94452 0.94860 1.70200 1.36422 1.40049 1.04203 0.85909 0.81810 0.78868 0.76955 1.19202 1.22459 1.19164 1.19984 0.92286 0.96535 0.94978 1.21055 0.95836 0.96841 0.99870 1.21219 1.00219 0.92675 1.02190 1.21198 0.93560 0.99313 1.01856 1.21339 0.96506 0.96492 1.02506 1.21195 0.99539 0.92294 0.98520 0.91801 0.91534 0.93975 0.92682 0.91624 0.91780 0.94367 0.91352 0.93075 0.90047 0.91760 0.95242 0.93183 0.76326 0.93575 0.88299 0.85169 0.84251 0.85372 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.12 71.98 0.58 -2.43 16 2 C -0.06 -1.40 0.80 -52.18 -0.04 -1.44 16 3 C -0.13 -2.32 8.47 71.98 0.61 -1.71 16 4 C -0.15 -3.53 8.12 71.98 0.58 -2.95 16 5 C -0.11 -2.84 4.38 30.59 0.13 -2.70 16 6 C 0.13 4.69 4.97 86.38 0.43 5.12 16 7 N -0.73 -29.82 5.45 -463.07 -2.53 -32.34 16 8 C 0.55 27.09 5.28 87.66 0.46 27.55 16 9 O -0.59 -33.01 13.86 -3.02 -0.04 -33.05 16 10 C 0.05 2.18 2.78 -13.03 -0.04 2.14 16 11 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 12 C -0.54 -26.36 7.11 25.60 0.18 -26.18 16 13 H 0.07 3.37 7.82 -2.91 -0.02 3.35 16 14 C 0.04 2.12 3.90 84.65 0.33 2.45 16 15 N -0.87 -49.31 11.11 21.45 0.24 -49.07 16 16 Si 0.94 41.02 29.54 68.60 2.03 43.05 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 C -0.04 -1.81 4.63 -19.87 -0.09 -1.90 16 21 C -0.12 -5.46 8.21 22.27 0.18 -5.28 16 22 C -0.15 -5.81 10.05 22.27 0.22 -5.59 16 23 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 24 C -0.15 -6.12 10.05 22.27 0.22 -5.90 16 25 C -0.10 -4.61 8.46 22.27 0.19 -4.42 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.05 6.43 -2.38 -0.02 1.04 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 1.11 6.43 -2.38 -0.02 1.09 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.03 1.24 6.43 -2.39 -0.02 1.22 16 38 H 0.05 1.82 6.43 -2.38 -0.02 1.81 16 39 H 0.40 14.73 8.36 -92.70 -0.77 13.95 16 40 H 0.25 14.39 8.31 -92.72 -0.77 13.61 16 41 H 0.10 4.65 6.99 -2.91 -0.02 4.63 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 45 H 0.11 5.56 6.05 -2.91 -0.02 5.54 16 Total: -1.00 -64.23 355.49 4.08 -60.16 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.19 Total: 39.55 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.19 Total: -28.31 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.29 Total: -81.41 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.04 Total: -33.05 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -64.23 4.08 -60.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533318539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.727 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds