Wall clock time and date at job start Tue Mar 31 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47089 * 2 1 4 4 H 1.08997 * 109.47464 * 54.99321 * 3 2 1 5 5 C 1.53009 * 109.46363 * 295.00018 * 3 2 1 6 6 C 1.52998 * 109.47193 * 175.00368 * 3 2 1 7 7 H 1.08995 * 109.47186 * 55.93272 * 6 3 2 8 8 C 1.50705 * 109.46816 * 175.93629 * 6 3 2 9 9 O 1.21276 * 120.00411 * 35.21206 * 8 6 3 10 10 N 1.34780 * 119.99543 * 215.21173 * 8 6 3 11 11 C 1.46497 * 120.00070 * 354.50283 * 10 8 6 12 12 C 1.46493 * 119.99651 * 174.50321 * 10 8 6 13 13 C 1.50704 * 109.47257 * 90.00119 * 12 10 8 14 14 H 1.07994 * 119.99752 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00003 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99648 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00166 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47126 * 89.99548 * 17 15 13 19 19 H 1.48496 * 109.46809 * 209.99994 * 17 15 13 20 20 H 1.48504 * 109.46887 * 329.99788 * 17 15 13 21 21 C 1.50702 * 109.46610 * 295.93295 * 6 3 2 22 22 C 1.38234 * 119.99813 * 299.72744 * 21 6 3 23 23 C 1.38239 * 119.99479 * 179.81493 * 22 21 6 24 24 C 1.38235 * 120.00157 * 0.39720 * 23 22 21 25 25 C 1.38230 * 119.99959 * 359.85645 * 24 23 22 26 26 C 1.38235 * 119.99809 * 120.00656 * 21 6 3 27 27 H 1.09000 * 109.47656 * 60.00627 * 1 2 3 28 28 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47566 * 300.00081 * 1 2 3 30 30 H 1.08993 * 109.47123 * 239.99624 * 2 1 3 31 31 H 1.09004 * 109.46958 * 119.99198 * 2 1 3 32 32 H 1.08992 * 109.47199 * 64.96557 * 5 3 2 33 33 H 1.08996 * 109.46545 * 184.96992 * 5 3 2 34 34 H 1.09003 * 109.46825 * 304.96186 * 5 3 2 35 35 H 1.09009 * 109.46899 * 94.53438 * 11 10 8 36 36 H 1.08992 * 109.47320 * 214.52898 * 11 10 8 37 37 H 1.09000 * 109.47373 * 334.53276 * 11 10 8 38 38 H 1.09003 * 109.47030 * 209.99893 * 12 10 8 39 39 H 1.09006 * 109.47492 * 329.99909 * 12 10 8 40 40 H 0.97006 * 119.99545 * 180.02562 * 16 15 13 41 41 H 1.07998 * 120.00225 * 359.97438 * 22 21 6 42 42 H 1.08009 * 119.99915 * 180.23150 * 23 22 21 43 43 H 1.08000 * 119.99561 * 179.84085 * 24 23 22 44 44 H 1.08004 * 119.99952 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99965 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 1.6351 2.1265 -1.3075 6 6 3.5648 1.4444 0.1256 7 1 3.9961 0.8448 -0.6758 8 6 4.0753 2.8588 0.0254 9 8 3.4269 3.7720 0.4907 10 7 5.2525 3.1089 -0.5813 11 6 6.0927 1.9982 -1.0361 12 6 5.6919 4.4913 -0.7861 13 6 6.4970 4.9441 0.4047 14 1 6.6643 4.2697 1.2314 15 6 7.0201 6.2194 0.4386 16 7 7.7231 6.6143 1.4776 17 14 6.7302 7.3862 -0.9911 18 1 5.4841 8.1584 -0.7549 19 1 7.8778 8.3214 -1.1072 20 1 6.5982 6.6060 -2.2478 21 6 3.9596 0.8610 1.4578 22 6 3.5320 1.4592 2.6284 23 6 3.8910 0.9218 3.8504 24 6 4.6845 -0.2090 3.9018 25 6 5.1165 -0.8041 2.7313 26 6 4.7543 -0.2689 1.5093 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5490 2.2040 -1.3558 33 1 2.0727 3.1240 -1.3463 34 1 1.9953 1.5386 -2.1517 35 1 5.8842 1.7911 -2.0858 36 1 7.1428 2.2660 -0.9203 37 1 5.8760 1.1113 -0.4407 38 1 6.3077 4.5476 -1.6837 39 1 4.8207 5.1361 -0.9020 40 1 8.0908 7.5116 1.5016 41 1 2.9152 2.3448 2.5882 42 1 3.5538 1.3869 4.7650 43 1 4.9671 -0.6273 4.8566 44 1 5.7368 -1.6873 2.7716 45 1 5.0917 -0.7339 0.5948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:31 Heat of formation + Delta-G solvation = -24.775637 kcal Electronic energy + Delta-G solvation = -24022.184764 eV Core-core repulsion = 20811.099024 eV Total energy + Delta-G solvation = -3211.085740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26867 -38.34250 -36.35273 -34.83661 -32.66283 -32.05170 -30.72510 -29.73638 -28.61413 -26.73619 -25.77411 -24.12166 -22.52704 -22.37310 -21.32392 -19.77641 -18.22729 -16.99898 -16.74515 -16.42273 -15.45351 -15.34141 -14.93589 -14.57955 -14.35811 -14.16656 -13.61487 -13.34820 -13.27704 -13.15230 -12.62423 -12.41609 -12.28315 -12.21133 -12.13124 -11.95055 -11.70534 -11.59442 -11.49405 -11.06278 -10.90299 -10.86273 -10.66711 -10.50917 -10.41779 -10.36784 -10.12321 -9.50979 -9.11524 -8.72355 -8.56033 -8.36807 -7.65751 -6.05331 -4.03500 1.49245 1.59315 3.30249 3.35430 3.36181 3.37723 3.83070 3.99594 4.41725 4.76503 4.82562 4.95813 5.05332 5.09929 5.15652 5.24446 5.29657 5.35658 5.38947 5.55318 5.61036 5.63198 5.65190 5.74048 5.77888 5.82204 5.87076 5.98972 6.03763 6.12263 6.12719 6.19970 6.21658 6.24367 6.48559 6.50672 6.60872 6.70481 6.70725 6.81386 6.95081 7.17269 7.37280 7.64197 8.28667 8.50826 8.97326 9.03147 9.54981 11.08257 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005520 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.984411 B = 5071.661969 C = 6059.743443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.069 4.069 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.066 4.066 7 H 0.091 0.909 8 C 0.520 3.480 9 O -0.534 6.534 10 N -0.596 5.596 11 C 0.080 3.920 12 C 0.216 3.784 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.065 4.065 22 C -0.098 4.098 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.116 4.116 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -17.079 -2.954 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.088 4.088 4 H 0.101 0.899 5 C -0.209 4.209 6 C -0.088 4.088 7 H 0.109 0.891 8 C 0.306 3.694 9 O -0.411 6.411 10 N -0.328 5.328 11 C -0.064 4.064 12 C 0.096 3.904 13 C -0.563 4.563 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.065 4.065 22 C -0.116 4.116 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.134 4.134 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.714 -16.411 -2.658 19.255 hybrid contribution 0.246 0.713 -0.593 0.960 sum -9.468 -15.697 -3.251 18.618 Atomic orbital electron populations 1.21792 0.95949 1.01144 1.01964 1.21575 0.95783 0.96125 1.01979 1.21011 0.91939 0.96216 0.99627 0.89921 1.21926 1.01310 1.01346 0.96268 1.20482 0.97362 0.95175 0.95788 0.89067 1.20069 0.81304 0.89780 0.78236 1.90651 1.57757 1.46348 1.46333 1.47820 1.18694 1.08312 1.57956 1.21710 0.96765 0.89748 0.98130 1.19646 0.95498 0.78082 0.97206 1.21323 1.31749 0.99413 1.03793 0.90797 1.24860 0.94671 0.97677 0.95827 1.69908 1.35478 1.18900 1.29399 0.86866 0.78189 0.81457 0.83261 1.19948 1.21090 1.19114 1.19417 0.97913 0.95382 0.93813 1.21175 0.99360 0.99243 0.91810 1.21143 0.98454 0.96201 0.97757 1.21107 0.98478 0.96489 0.98126 1.21029 1.00357 1.00184 0.92495 1.20986 0.98348 0.96155 0.97877 0.92561 0.93117 0.92767 0.92197 0.91718 0.92432 0.91707 0.93129 0.93688 0.90690 0.91933 0.95327 0.94758 0.92641 0.85348 0.86185 0.86427 0.86304 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.15 0.36 -1.10 16 2 C -0.12 -1.27 5.29 -26.73 -0.14 -1.41 16 3 C -0.07 -0.94 1.50 -90.61 -0.14 -1.07 16 4 H 0.08 1.26 7.12 -51.93 -0.37 0.89 16 5 C -0.15 -2.02 8.59 37.16 0.32 -1.70 16 6 C -0.07 -1.01 1.17 -92.92 -0.11 -1.11 16 7 H 0.09 1.19 6.25 -51.93 -0.32 0.86 16 8 C 0.52 10.56 5.15 -10.98 -0.06 10.50 16 9 O -0.53 -12.89 14.65 5.56 0.08 -12.80 16 10 N -0.60 -12.52 2.86 -182.95 -0.52 -13.05 16 11 C 0.08 1.29 9.86 59.85 0.59 1.88 16 12 C 0.22 5.38 4.21 -5.20 -0.02 5.36 16 13 C -0.52 -15.36 9.94 -34.44 -0.34 -15.70 16 14 H 0.07 2.41 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 17 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.06 -0.97 3.45 -104.62 -0.36 -1.34 16 22 C -0.10 -1.58 8.75 -39.58 -0.35 -1.93 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 24 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 25 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 26 C -0.12 -1.50 8.85 -39.58 -0.35 -1.85 16 27 H 0.06 0.52 6.68 -51.93 -0.35 0.18 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 7.19 -51.93 -0.37 0.36 16 32 H 0.06 0.68 6.81 -51.93 -0.35 0.32 16 33 H 0.06 1.06 6.38 -51.93 -0.33 0.73 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 37 H 0.06 0.87 5.11 -51.93 -0.27 0.60 16 38 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.03 0.90 6.93 -51.93 -0.36 0.54 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.13 2.26 7.05 -52.49 -0.37 1.89 16 42 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 45 H 0.12 1.26 7.64 -52.49 -0.40 0.86 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -33.92 355.37 -8.13 -42.05 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.26 Total: 2.03 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.89 Total: -13.39 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.25 Total: -40.41 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.92 -8.13 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.272 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds