Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47089 * 2 1 4 4 H 1.08997 * 109.47464 * 54.99321 * 3 2 1 5 5 C 1.53009 * 109.46363 * 295.00018 * 3 2 1 6 6 C 1.52998 * 109.47193 * 175.00368 * 3 2 1 7 7 H 1.08995 * 109.47186 * 55.93272 * 6 3 2 8 8 C 1.50705 * 109.46816 * 175.93629 * 6 3 2 9 9 O 1.21276 * 120.00411 * 35.21206 * 8 6 3 10 10 N 1.34780 * 119.99543 * 215.21173 * 8 6 3 11 11 C 1.46497 * 120.00070 * 354.50283 * 10 8 6 12 12 C 1.46493 * 119.99651 * 174.50321 * 10 8 6 13 13 C 1.50704 * 109.47257 * 90.00119 * 12 10 8 14 14 H 1.07994 * 119.99752 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00003 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99648 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00166 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47126 * 89.99548 * 17 15 13 19 19 H 1.48496 * 109.46809 * 209.99994 * 17 15 13 20 20 H 1.48504 * 109.46887 * 329.99788 * 17 15 13 21 21 C 1.50702 * 109.46610 * 295.93295 * 6 3 2 22 22 C 1.38234 * 119.99813 * 299.72744 * 21 6 3 23 23 C 1.38239 * 119.99479 * 179.81493 * 22 21 6 24 24 C 1.38235 * 120.00157 * 0.39720 * 23 22 21 25 25 C 1.38230 * 119.99959 * 359.85645 * 24 23 22 26 26 C 1.38235 * 119.99809 * 120.00656 * 21 6 3 27 27 H 1.09000 * 109.47656 * 60.00627 * 1 2 3 28 28 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47566 * 300.00081 * 1 2 3 30 30 H 1.08993 * 109.47123 * 239.99624 * 2 1 3 31 31 H 1.09004 * 109.46958 * 119.99198 * 2 1 3 32 32 H 1.08992 * 109.47199 * 64.96557 * 5 3 2 33 33 H 1.08996 * 109.46545 * 184.96992 * 5 3 2 34 34 H 1.09003 * 109.46825 * 304.96186 * 5 3 2 35 35 H 1.09009 * 109.46899 * 94.53438 * 11 10 8 36 36 H 1.08992 * 109.47320 * 214.52898 * 11 10 8 37 37 H 1.09000 * 109.47373 * 334.53276 * 11 10 8 38 38 H 1.09003 * 109.47030 * 209.99893 * 12 10 8 39 39 H 1.09006 * 109.47492 * 329.99909 * 12 10 8 40 40 H 0.97006 * 119.99545 * 180.02562 * 16 15 13 41 41 H 1.07998 * 120.00225 * 359.97438 * 22 21 6 42 42 H 1.08009 * 119.99915 * 180.23150 * 23 22 21 43 43 H 1.08000 * 119.99561 * 179.84085 * 24 23 22 44 44 H 1.08004 * 119.99952 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.99965 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 1.6351 2.1265 -1.3075 6 6 3.5648 1.4444 0.1256 7 1 3.9961 0.8448 -0.6758 8 6 4.0753 2.8588 0.0254 9 8 3.4269 3.7720 0.4907 10 7 5.2525 3.1089 -0.5813 11 6 6.0927 1.9982 -1.0361 12 6 5.6919 4.4913 -0.7861 13 6 6.4970 4.9441 0.4047 14 1 6.6643 4.2697 1.2314 15 6 7.0201 6.2194 0.4386 16 7 7.7231 6.6143 1.4776 17 14 6.7302 7.3862 -0.9911 18 1 5.4841 8.1584 -0.7549 19 1 7.8778 8.3214 -1.1072 20 1 6.5982 6.6060 -2.2478 21 6 3.9596 0.8610 1.4578 22 6 3.5320 1.4592 2.6284 23 6 3.8910 0.9218 3.8504 24 6 4.6845 -0.2090 3.9018 25 6 5.1165 -0.8041 2.7313 26 6 4.7543 -0.2689 1.5093 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5490 2.2040 -1.3558 33 1 2.0727 3.1240 -1.3463 34 1 1.9953 1.5386 -2.1517 35 1 5.8842 1.7911 -2.0858 36 1 7.1428 2.2660 -0.9203 37 1 5.8760 1.1113 -0.4407 38 1 6.3077 4.5476 -1.6837 39 1 4.8207 5.1361 -0.9020 40 1 8.0908 7.5116 1.5016 41 1 2.9152 2.3448 2.5882 42 1 3.5538 1.3869 4.7650 43 1 4.9671 -0.6273 4.8566 44 1 5.7368 -1.6873 2.7716 45 1 5.0917 -0.7339 0.5948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -45.048801 kcal Electronic energy + Delta-G solvation = -24023.063874 eV Core-core repulsion = 20811.099024 eV Total energy + Delta-G solvation = -3211.964850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59733 -39.64034 -37.50554 -36.52646 -34.73243 -33.27851 -31.78356 -30.83263 -30.40637 -27.95469 -27.25488 -25.37691 -24.01493 -23.58905 -22.51601 -20.94573 -19.67652 -19.15957 -17.98294 -17.83574 -17.13512 -16.53811 -16.16929 -16.02867 -15.66254 -15.48592 -14.93113 -14.76179 -14.44208 -14.33192 -14.16553 -13.79592 -13.66781 -13.59027 -13.41247 -13.14500 -13.09611 -12.83829 -12.76949 -12.51954 -12.46622 -12.10135 -12.04604 -11.85774 -11.76551 -11.65071 -11.46586 -11.38170 -10.84613 -10.63734 -9.79697 -9.54957 -9.37840 -8.35096 -6.39983 0.40839 0.51751 1.30158 1.34644 1.43161 1.81786 2.29242 2.33605 2.88637 2.99164 3.62900 3.67378 3.87273 4.01028 4.11145 4.16468 4.27010 4.28518 4.39016 4.40630 4.58147 4.62431 4.63365 4.68605 4.72473 4.75318 4.79842 4.84708 4.92844 4.94591 5.07538 5.12858 5.14363 5.16446 5.23451 5.27442 5.44482 5.47957 5.55246 5.57579 5.62029 5.63738 5.71100 6.12894 6.23427 6.60969 6.71278 7.20578 7.44409 8.82369 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005520 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.984411 B = 5071.661969 C = 6059.743443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.067 4.067 4 H 0.051 0.949 5 C -0.147 4.147 6 C -0.053 4.053 7 H 0.123 0.877 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.608 5.608 11 C 0.073 3.927 12 C 0.225 3.775 13 C -0.532 4.532 14 H 0.022 0.978 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.236 1.236 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 -20.042 -5.455 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.086 4.086 4 H 0.070 0.930 5 C -0.204 4.204 6 C -0.074 4.074 7 H 0.141 0.859 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.339 5.339 11 C -0.069 4.069 12 C 0.102 3.898 13 C -0.571 4.571 14 H 0.040 0.960 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.080 4.080 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.132 4.132 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.482 -19.429 -5.175 22.230 hybrid contribution 0.192 1.583 0.342 1.630 sum -9.290 -17.847 -4.833 20.692 Atomic orbital electron populations 1.21792 0.95144 1.02195 1.01670 1.21501 0.96432 0.93712 1.02803 1.20995 0.90940 0.98057 0.98582 0.93040 1.21892 1.02016 0.99545 0.96990 1.20468 0.98258 0.91604 0.97044 0.85881 1.21060 0.80586 0.91635 0.76623 1.90616 1.59240 1.48579 1.48221 1.47968 1.19644 1.08013 1.58279 1.22014 0.95295 0.88738 1.00823 1.19314 0.94152 0.80500 0.95802 1.21524 1.32477 0.99059 1.04007 0.96003 1.25884 0.94108 0.99666 0.99152 1.70068 1.36893 1.19741 1.32036 0.85698 0.77998 0.78892 0.80250 1.20295 1.19853 1.15900 1.19486 0.99040 0.96552 0.92931 1.21118 1.00719 0.99190 0.93718 1.21335 0.99314 0.97309 0.97311 1.21480 0.97339 0.95507 0.99989 1.21504 0.99631 1.00780 0.91780 1.21364 0.96969 0.95071 0.99773 0.92090 0.91332 0.93937 0.89967 0.92084 0.91182 0.95454 0.90687 0.89745 0.91846 0.89554 0.93084 0.96542 0.92312 0.88764 0.85688 0.83734 0.82729 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.67 71.98 0.70 -1.93 16 2 C -0.11 -2.08 5.29 30.59 0.16 -1.91 16 3 C -0.07 -1.79 1.50 -10.79 -0.02 -1.81 16 4 H 0.05 1.69 7.12 -2.39 -0.02 1.68 16 5 C -0.15 -3.83 8.59 71.99 0.62 -3.21 16 6 C -0.05 -1.55 1.17 -12.28 -0.01 -1.57 16 7 H 0.12 2.77 6.25 -2.39 -0.01 2.75 16 8 C 0.51 21.35 5.15 87.66 0.45 21.80 16 9 O -0.59 -30.27 14.65 -3.02 -0.04 -30.32 16 10 N -0.61 -25.52 2.86 -851.13 -2.43 -27.95 16 11 C 0.07 2.18 9.86 127.77 1.26 3.44 16 12 C 0.22 11.28 4.21 85.64 0.36 11.64 16 13 C -0.53 -32.45 9.94 25.60 0.25 -32.19 16 14 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 15 C 0.01 0.58 5.47 84.65 0.46 1.04 16 16 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 17 Si 0.95 45.44 27.47 68.60 1.88 47.33 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 21 C -0.08 -2.36 3.45 -19.87 -0.07 -2.42 16 22 C -0.13 -4.44 8.75 22.27 0.19 -4.24 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 25 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 26 C -0.11 -2.60 8.85 22.27 0.20 -2.41 16 27 H 0.06 1.00 6.68 -2.39 -0.02 0.99 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.25 7.19 -2.38 -0.02 1.23 16 32 H 0.07 1.60 6.81 -2.39 -0.02 1.58 16 33 H 0.03 0.90 6.38 -2.39 -0.02 0.89 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 2.03 8.11 -2.39 -0.02 2.01 16 37 H 0.09 2.11 5.11 -2.39 -0.01 2.10 16 38 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 39 H 0.02 0.88 6.93 -2.38 -0.02 0.87 16 40 H 0.27 16.12 8.31 -92.70 -0.77 15.35 16 41 H 0.09 3.78 7.05 -2.91 -0.02 3.75 16 42 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.15 2.41 7.64 -2.91 -0.02 2.39 16 Total: -1.00 -80.60 355.37 5.84 -74.77 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.90 Total: 19.92 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.23 Total: -22.54 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -2.13 Total: -89.15 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.04 Total: -30.32 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Total: -80.60 5.84 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.719 kcal (2) G-P(sol) polarization free energy of solvation -80.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds