Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47375 * 2 1 4 4 H 1.09003 * 109.47428 * 52.48510 * 3 2 1 5 5 C 1.53003 * 109.47361 * 172.48783 * 3 2 1 6 6 C 1.53004 * 109.47237 * 292.48785 * 3 2 1 7 7 H 1.08999 * 109.47113 * 306.82985 * 6 3 2 8 8 C 1.50701 * 109.47461 * 186.82729 * 6 3 2 9 9 O 1.21287 * 119.99375 * 331.94238 * 8 6 3 10 10 N 1.34772 * 120.00177 * 151.94875 * 8 6 3 11 11 C 1.46502 * 119.99775 * 354.58002 * 10 8 6 12 12 C 1.46499 * 119.99847 * 174.58963 * 10 8 6 13 13 C 1.50692 * 109.47711 * 89.99589 * 12 10 8 14 14 H 1.08008 * 120.00124 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00520 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00346 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47329 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47305 * 120.00389 * 17 15 13 20 20 H 1.48498 * 109.47197 * 240.00209 * 17 15 13 21 21 C 1.50700 * 109.46898 * 66.82417 * 6 3 2 22 22 C 1.38234 * 119.99890 * 54.13428 * 21 6 3 23 23 C 1.38241 * 119.99958 * 180.34220 * 22 21 6 24 24 C 1.38235 * 119.99782 * 359.88873 * 23 22 21 25 25 C 1.38237 * 119.99975 * 0.08530 * 24 23 22 26 26 C 1.38227 * 120.00369 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46361 * 74.07909 * 1 2 3 28 28 H 1.08991 * 109.47385 * 194.07623 * 1 2 3 29 29 H 1.08991 * 109.47047 * 314.08162 * 1 2 3 30 30 H 1.09004 * 109.47626 * 239.99624 * 2 1 3 31 31 H 1.08998 * 109.47279 * 119.99816 * 2 1 3 32 32 H 1.09001 * 109.47024 * 186.30623 * 5 3 2 33 33 H 1.08993 * 109.46898 * 306.30763 * 5 3 2 34 34 H 1.08999 * 109.46706 * 66.30471 * 5 3 2 35 35 H 1.08994 * 109.47016 * 90.75532 * 11 10 8 36 36 H 1.09004 * 109.46987 * 210.74978 * 11 10 8 37 37 H 1.08996 * 109.47193 * 330.75067 * 11 10 8 38 38 H 1.09002 * 109.46461 * 209.99352 * 12 10 8 39 39 H 1.08997 * 109.46904 * 329.99073 * 12 10 8 40 40 H 0.96994 * 120.00041 * 180.02562 * 16 15 13 41 41 H 1.08001 * 120.00232 * 0.27431 * 22 21 6 42 42 H 1.07998 * 119.99919 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.99943 * 180.10945 * 24 23 22 44 44 H 1.08001 * 119.99639 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00570 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5712 1.9937 0.8151 5 6 3.5584 1.4465 0.1886 6 6 1.6899 2.1072 -1.3328 7 1 2.0556 1.4904 -2.1537 8 6 2.3350 3.4675 -1.4006 9 8 2.5581 4.0842 -0.3803 10 7 2.6639 3.9986 -2.5948 11 6 2.5045 3.2072 -3.8173 12 6 3.1810 5.3672 -2.6703 13 6 4.6830 5.3442 -2.5503 14 1 5.2008 4.4040 -2.4294 15 6 5.3964 6.5232 -2.5948 16 7 4.7659 7.6681 -2.7415 17 14 7.2581 6.4946 -2.4453 18 1 7.7208 5.0922 -2.2894 19 1 7.8621 7.0815 -3.6685 20 1 7.6718 7.2875 -1.2598 21 6 0.1942 2.2545 -1.4430 22 6 -0.5127 2.8955 -0.4429 23 6 -1.8856 3.0245 -0.5405 24 6 -2.5513 2.5143 -1.6394 25 6 -1.8442 1.8738 -2.6398 26 6 -0.4716 1.7438 -2.5416 27 1 -0.3632 0.2819 -0.9883 28 1 -0.3634 -0.9967 0.2499 29 1 -0.3633 0.7149 0.7382 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9078 2.4729 0.3008 33 1 3.8152 0.8757 1.0809 34 1 4.0338 0.9939 -0.6816 35 1 1.5116 3.3774 -4.2333 36 1 3.2593 3.5062 -4.5447 37 1 2.6242 2.1494 -3.5835 38 1 2.8997 5.8096 -3.6260 39 1 2.7606 5.9598 -1.8578 40 1 5.2678 8.4975 -2.7732 41 1 0.0074 3.2947 0.4153 42 1 -2.4379 3.5256 0.2406 43 1 -3.6236 2.6166 -1.7166 44 1 -2.3643 1.4756 -3.4986 45 1 0.0808 1.2437 -3.3234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -19.443415 kcal Electronic energy + Delta-G solvation = -24229.129006 eV Core-core repulsion = 21018.274489 eV Total energy + Delta-G solvation = -3210.854517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46062 -38.41447 -36.16294 -34.71898 -32.64786 -31.58662 -30.83794 -30.32687 -28.06831 -26.68988 -25.54516 -23.54581 -22.74482 -22.62429 -21.44737 -19.96413 -18.19091 -16.96111 -16.57917 -16.35462 -15.49802 -15.35446 -14.73211 -14.48842 -14.21738 -13.95036 -13.70729 -13.55159 -13.28475 -13.02742 -12.68126 -12.48827 -12.28187 -12.11012 -11.94732 -11.83444 -11.48981 -11.32292 -11.15807 -11.00448 -10.91511 -10.84695 -10.63657 -10.55225 -10.42733 -10.25732 -10.12780 -9.57269 -9.03049 -8.77302 -8.41965 -8.25449 -7.58820 -6.02188 -4.06537 1.41548 1.49089 3.30707 3.37886 3.41054 3.46352 3.82850 4.03483 4.46394 4.79859 4.86720 4.94612 5.04813 5.06905 5.17527 5.25083 5.32022 5.37747 5.45265 5.48179 5.61531 5.64880 5.75796 5.85445 5.89480 5.92437 5.97548 6.06907 6.08268 6.10745 6.14798 6.24381 6.27696 6.39389 6.53757 6.54894 6.61268 6.72205 6.74512 7.06531 7.10335 7.46082 7.58015 7.94401 8.25997 8.46336 8.93361 9.14157 9.58505 11.05947 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004897 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.533201 B = 5716.387342 C = 6380.419852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.068 4.068 4 H 0.080 0.920 5 C -0.155 4.155 6 C -0.071 4.071 7 H 0.093 0.907 8 C 0.517 3.483 9 O -0.535 6.535 10 N -0.599 5.599 11 C 0.082 3.918 12 C 0.246 3.754 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.048 4.048 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.151 -15.383 0.749 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.153 4.153 3 C -0.087 4.087 4 H 0.098 0.902 5 C -0.213 4.213 6 C -0.092 4.092 7 H 0.111 0.889 8 C 0.303 3.697 9 O -0.412 6.412 10 N -0.331 5.331 11 C -0.062 4.062 12 C 0.127 3.873 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.049 4.049 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.146 4.146 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.983 -14.829 1.252 19.107 hybrid contribution 1.061 0.098 -0.135 1.074 sum -10.922 -14.731 1.117 18.372 Atomic orbital electron populations 1.22285 0.95952 1.00760 1.03270 1.21572 0.96007 0.96071 1.01607 1.21025 0.96847 0.95067 0.95779 0.90154 1.21956 0.94698 1.03812 1.00793 1.20574 0.92025 0.96280 1.00342 0.88862 1.20002 0.78963 0.86767 0.83964 1.90644 1.54620 1.62255 1.33716 1.48125 1.62775 1.17034 1.05145 1.21691 1.00970 0.95003 0.88527 1.19270 0.94035 0.76025 0.97947 1.21457 0.91654 0.93075 1.49847 0.92430 1.24936 0.98747 0.95302 0.95173 1.69946 1.35606 0.97669 1.50284 0.86461 0.85359 0.78092 0.77619 1.19806 1.21016 1.20892 1.19405 0.93737 0.97120 0.94603 1.21115 0.94031 0.98121 0.99069 1.21108 0.94398 0.99807 0.98235 1.21077 0.99614 0.99242 0.94643 1.21034 0.94096 0.99917 0.98847 1.20982 0.94514 1.00691 0.97475 0.91009 0.93881 0.92606 0.92262 0.92126 0.90422 0.92977 0.93286 0.93756 0.90836 0.92482 0.95130 0.94049 0.92826 0.85597 0.86301 0.86509 0.86321 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.35 37.16 0.31 -1.52 16 2 C -0.11 -1.32 5.38 -26.73 -0.14 -1.46 16 3 C -0.07 -0.98 1.65 -90.62 -0.15 -1.13 16 4 H 0.08 1.24 6.66 -51.93 -0.35 0.90 16 5 C -0.16 -2.40 8.67 37.16 0.32 -2.07 16 6 C -0.07 -1.08 1.42 -92.92 -0.13 -1.21 16 7 H 0.09 1.27 5.58 -51.93 -0.29 0.98 16 8 C 0.52 10.66 5.67 -10.99 -0.06 10.60 16 9 O -0.53 -13.13 14.45 5.55 0.08 -13.05 16 10 N -0.60 -12.87 2.86 -182.96 -0.52 -13.39 16 11 C 0.08 1.34 10.21 59.85 0.61 1.95 16 12 C 0.25 6.53 5.12 -5.20 -0.03 6.51 16 13 C -0.52 -14.89 9.39 -34.45 -0.32 -15.21 16 14 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 C -0.05 -0.67 2.50 -104.62 -0.26 -0.93 16 22 C -0.11 -1.50 7.07 -39.58 -0.28 -1.78 16 23 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 24 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.12 -1.31 10.04 -39.59 -0.40 -1.71 16 26 C -0.12 -1.41 7.83 -39.58 -0.31 -1.72 16 27 H 0.07 0.81 4.28 -51.93 -0.22 0.59 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.65 6.74 -51.93 -0.35 0.30 16 30 H 0.06 0.64 8.11 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.08 1.49 6.25 -51.93 -0.32 1.17 16 33 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.06 0.77 5.88 -51.93 -0.31 0.46 16 38 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.24 7.50 -51.93 -0.39 0.85 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 1.95 7.19 -52.49 -0.38 1.57 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.22 7.95 -52.49 -0.42 0.80 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -32.39 353.56 -8.34 -40.73 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.21 Total: 1.18 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.74 Total: -11.68 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.21 Total: -39.52 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.39 -8.34 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.290 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds