Wall clock time and date at job start Tue Mar 31 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47375 * 2 1 4 4 H 1.09003 * 109.47428 * 52.48510 * 3 2 1 5 5 C 1.53003 * 109.47361 * 172.48783 * 3 2 1 6 6 C 1.53004 * 109.47237 * 292.48785 * 3 2 1 7 7 H 1.08999 * 109.47113 * 306.82985 * 6 3 2 8 8 C 1.50701 * 109.47461 * 186.82729 * 6 3 2 9 9 O 1.21287 * 119.99375 * 331.94238 * 8 6 3 10 10 N 1.34772 * 120.00177 * 151.94875 * 8 6 3 11 11 C 1.46502 * 119.99775 * 354.58002 * 10 8 6 12 12 C 1.46499 * 119.99847 * 174.58963 * 10 8 6 13 13 C 1.50692 * 109.47711 * 89.99589 * 12 10 8 14 14 H 1.08008 * 120.00124 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00520 * 179.97438 * 13 12 10 16 16 N 1.31520 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00346 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47329 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47305 * 120.00389 * 17 15 13 20 20 H 1.48498 * 109.47197 * 240.00209 * 17 15 13 21 21 C 1.50700 * 109.46898 * 66.82417 * 6 3 2 22 22 C 1.38234 * 119.99890 * 54.13428 * 21 6 3 23 23 C 1.38241 * 119.99958 * 180.34220 * 22 21 6 24 24 C 1.38235 * 119.99782 * 359.88873 * 23 22 21 25 25 C 1.38237 * 119.99975 * 0.08530 * 24 23 22 26 26 C 1.38227 * 120.00369 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46361 * 74.07909 * 1 2 3 28 28 H 1.08991 * 109.47385 * 194.07623 * 1 2 3 29 29 H 1.08991 * 109.47047 * 314.08162 * 1 2 3 30 30 H 1.09004 * 109.47626 * 239.99624 * 2 1 3 31 31 H 1.08998 * 109.47279 * 119.99816 * 2 1 3 32 32 H 1.09001 * 109.47024 * 186.30623 * 5 3 2 33 33 H 1.08993 * 109.46898 * 306.30763 * 5 3 2 34 34 H 1.08999 * 109.46706 * 66.30471 * 5 3 2 35 35 H 1.08994 * 109.47016 * 90.75532 * 11 10 8 36 36 H 1.09004 * 109.46987 * 210.74978 * 11 10 8 37 37 H 1.08996 * 109.47193 * 330.75067 * 11 10 8 38 38 H 1.09002 * 109.46461 * 209.99352 * 12 10 8 39 39 H 1.08997 * 109.46904 * 329.99073 * 12 10 8 40 40 H 0.96994 * 120.00041 * 180.02562 * 16 15 13 41 41 H 1.08001 * 120.00232 * 0.27431 * 22 21 6 42 42 H 1.07998 * 119.99919 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.99943 * 180.10945 * 24 23 22 44 44 H 1.08001 * 119.99639 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00570 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5712 1.9937 0.8151 5 6 3.5584 1.4465 0.1886 6 6 1.6899 2.1072 -1.3328 7 1 2.0556 1.4904 -2.1537 8 6 2.3350 3.4675 -1.4006 9 8 2.5581 4.0842 -0.3803 10 7 2.6639 3.9986 -2.5948 11 6 2.5045 3.2072 -3.8173 12 6 3.1810 5.3672 -2.6703 13 6 4.6830 5.3442 -2.5503 14 1 5.2008 4.4040 -2.4294 15 6 5.3964 6.5232 -2.5948 16 7 4.7659 7.6681 -2.7415 17 14 7.2581 6.4946 -2.4453 18 1 7.7208 5.0922 -2.2894 19 1 7.8621 7.0815 -3.6685 20 1 7.6718 7.2875 -1.2598 21 6 0.1942 2.2545 -1.4430 22 6 -0.5127 2.8955 -0.4429 23 6 -1.8856 3.0245 -0.5405 24 6 -2.5513 2.5143 -1.6394 25 6 -1.8442 1.8738 -2.6398 26 6 -0.4716 1.7438 -2.5416 27 1 -0.3632 0.2819 -0.9883 28 1 -0.3634 -0.9967 0.2499 29 1 -0.3633 0.7149 0.7382 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9078 2.4729 0.3008 33 1 3.8152 0.8757 1.0809 34 1 4.0338 0.9939 -0.6816 35 1 1.5116 3.3774 -4.2333 36 1 3.2593 3.5062 -4.5447 37 1 2.6242 2.1494 -3.5835 38 1 2.8997 5.8096 -3.6260 39 1 2.7606 5.9598 -1.8578 40 1 5.2678 8.4975 -2.7732 41 1 0.0074 3.2947 0.4153 42 1 -2.4379 3.5256 0.2406 43 1 -3.6236 2.6166 -1.7166 44 1 -2.3643 1.4756 -3.4986 45 1 0.0808 1.2437 -3.3234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:32 Heat of formation + Delta-G solvation = -37.542688 kcal Electronic energy + Delta-G solvation = -24229.913850 eV Core-core repulsion = 21018.274489 eV Total energy + Delta-G solvation = -3211.639361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71382 -39.73545 -37.37111 -36.45095 -34.74617 -32.69583 -31.76251 -31.38516 -29.92609 -27.98254 -27.16186 -25.10570 -24.14074 -23.56118 -22.50547 -21.23756 -19.63080 -18.71906 -17.99002 -17.87018 -17.16671 -16.51486 -16.28341 -15.72621 -15.66416 -15.25507 -14.82479 -14.72596 -14.37453 -14.20527 -14.06743 -13.87313 -13.64524 -13.49519 -13.40877 -13.23088 -13.08599 -12.80337 -12.68305 -12.54163 -12.22806 -12.21986 -11.95599 -11.85134 -11.70392 -11.59552 -11.53027 -11.38426 -10.65986 -10.56257 -9.69898 -9.38860 -9.34627 -8.22997 -6.37689 0.45712 0.56114 1.34538 1.37110 1.48988 1.88120 2.31134 2.46137 2.93397 3.06279 3.67860 3.71145 3.82251 3.97647 4.14074 4.20798 4.29829 4.34550 4.38535 4.51238 4.54440 4.61609 4.69073 4.71743 4.78360 4.84700 4.88887 4.94426 4.99121 5.05841 5.13909 5.18562 5.20805 5.21942 5.27504 5.41646 5.45924 5.55596 5.57161 5.64222 5.68808 5.75304 5.85158 6.05741 6.16558 6.69927 6.81522 7.28458 7.52169 8.84253 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004897 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.533201 B = 5716.387342 C = 6380.419852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.067 4.067 4 H 0.057 0.943 5 C -0.152 4.152 6 C -0.054 4.054 7 H 0.118 0.882 8 C 0.509 3.491 9 O -0.588 6.588 10 N -0.609 5.609 11 C 0.077 3.923 12 C 0.262 3.738 13 C -0.536 4.536 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.268 1.268 20 H -0.282 1.282 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.021 0.979 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 -18.356 -1.009 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.143 4.143 3 C -0.086 4.086 4 H 0.075 0.925 5 C -0.210 4.210 6 C -0.075 4.075 7 H 0.136 0.864 8 C 0.298 3.702 9 O -0.468 6.468 10 N -0.340 5.340 11 C -0.065 4.065 12 C 0.141 3.859 13 C -0.575 4.575 14 H 0.070 0.930 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.208 1.208 21 C -0.064 4.064 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.039 0.961 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.779 -17.840 -0.535 21.951 hybrid contribution 1.203 1.061 0.440 1.663 sum -11.576 -16.779 -0.095 20.385 Atomic orbital electron populations 1.22226 0.95444 1.01212 1.02952 1.21506 0.96335 0.93530 1.02953 1.21015 0.95835 0.97003 0.94697 0.92480 1.21906 0.95688 1.01107 1.02254 1.20494 0.92864 0.92545 1.01606 0.86426 1.21034 0.77942 0.88466 0.82736 1.90611 1.56482 1.64193 1.35560 1.48158 1.62650 1.15701 1.07512 1.21974 1.02131 0.96129 0.86278 1.18705 0.93209 0.78755 0.95266 1.21691 0.92711 0.93063 1.50012 0.92962 1.25863 1.03979 0.94821 0.94540 1.70064 1.37690 0.98383 1.50881 0.85374 0.79091 0.78367 0.78018 1.19097 1.19285 1.20827 1.19308 0.92575 0.98773 0.95730 1.21026 0.95130 0.99496 0.98858 1.21294 0.93639 1.00200 0.99443 1.21445 1.01069 0.97948 0.93747 1.21441 0.93746 0.98800 0.99479 1.21266 0.95303 1.00064 0.96862 0.90899 0.92302 0.94058 0.90473 0.91157 0.95167 0.91100 0.92153 0.91427 0.91428 0.88914 0.96110 0.98936 0.92446 0.88661 0.85353 0.83794 0.83080 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.35 71.98 0.60 -2.60 16 2 C -0.11 -2.18 5.38 30.59 0.16 -2.01 16 3 C -0.07 -1.91 1.65 -10.79 -0.02 -1.92 16 4 H 0.06 1.89 6.66 -2.39 -0.02 1.88 16 5 C -0.15 -4.75 8.67 71.98 0.62 -4.13 16 6 C -0.05 -1.62 1.42 -12.28 -0.02 -1.64 16 7 H 0.12 2.86 5.58 -2.39 -0.01 2.85 16 8 C 0.51 21.82 5.67 87.66 0.50 22.32 16 9 O -0.59 -31.18 14.45 -3.05 -0.04 -31.23 16 10 N -0.61 -26.80 2.86 -851.15 -2.43 -29.23 16 11 C 0.08 2.39 10.21 127.77 1.30 3.69 16 12 C 0.26 14.64 5.12 85.63 0.44 15.08 16 13 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.39 5.46 84.65 0.46 0.85 16 16 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 17 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 C -0.06 -1.69 2.50 -19.86 -0.05 -1.74 16 22 C -0.13 -3.71 7.07 22.27 0.16 -3.55 16 23 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 24 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 25 C -0.12 -2.05 10.04 22.27 0.22 -1.83 16 26 C -0.12 -2.38 7.83 22.27 0.17 -2.20 16 27 H 0.07 1.43 4.28 -2.39 -0.01 1.42 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.93 6.74 -2.39 -0.02 0.92 16 30 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.03 1.22 6.25 -2.39 -0.01 1.20 16 33 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.09 2.18 5.88 -2.39 -0.01 2.17 16 38 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 39 H -0.01 -0.48 7.50 -2.39 -0.02 -0.50 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.10 3.29 7.19 -2.91 -0.02 3.27 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.15 2.19 7.95 -2.91 -0.02 2.16 16 Total: -1.00 -75.78 353.56 6.04 -69.74 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.96 Total: 16.10 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.25 Total: -16.06 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.15 Total: -86.42 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.04 Total: -31.23 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.78 6.04 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.196 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds