Wall clock time and date at job start Tue Mar 31 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.09005 * 109.46830 * 305.61587 * 3 2 1 5 5 C 1.53003 * 109.46967 * 185.62066 * 3 2 1 6 6 C 1.52997 * 109.47513 * 65.61383 * 3 2 1 7 7 H 1.08999 * 109.47173 * 299.66501 * 6 3 2 8 8 C 1.50694 * 109.47486 * 179.66014 * 6 3 2 9 9 O 1.21277 * 120.00015 * 272.81235 * 8 6 3 10 10 N 1.34778 * 119.99879 * 92.80340 * 8 6 3 11 11 C 1.46500 * 119.99784 * 5.41845 * 10 8 6 12 12 C 1.46496 * 120.00018 * 185.41197 * 10 8 6 13 13 C 1.50698 * 109.47108 * 90.00508 * 12 10 8 14 14 H 1.08003 * 120.00127 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00203 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99965 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99957 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47156 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47140 * 120.00450 * 17 15 13 20 20 H 1.48504 * 109.47110 * 240.00213 * 17 15 13 21 21 C 1.50708 * 109.46817 * 59.66322 * 6 3 2 22 22 C 1.38231 * 119.99743 * 69.51375 * 21 6 3 23 23 C 1.38243 * 119.99575 * 179.78885 * 22 21 6 24 24 C 1.38235 * 119.99904 * 0.44137 * 23 22 21 25 25 C 1.38235 * 120.00156 * 359.81583 * 24 23 22 26 26 C 1.38233 * 119.99829 * 249.79135 * 21 6 3 27 27 H 1.09001 * 109.46957 * 294.75347 * 1 2 3 28 28 H 1.09004 * 109.46876 * 174.75703 * 1 2 3 29 29 H 1.08999 * 109.47307 * 54.75627 * 1 2 3 30 30 H 1.09002 * 109.47108 * 119.99546 * 2 1 3 31 31 H 1.09002 * 109.47128 * 240.00128 * 2 1 3 32 32 H 1.08997 * 109.47237 * 68.24924 * 5 3 2 33 33 H 1.09001 * 109.46772 * 188.24927 * 5 3 2 34 34 H 1.08995 * 109.46820 * 308.24589 * 5 3 2 35 35 H 1.09000 * 109.47275 * 93.30738 * 11 10 8 36 36 H 1.08998 * 109.46837 * 213.30499 * 11 10 8 37 37 H 1.08996 * 109.47270 * 333.30446 * 11 10 8 38 38 H 1.09001 * 109.47170 * 210.00442 * 12 10 8 39 39 H 1.09000 * 109.47159 * 330.00400 * 12 10 8 40 40 H 0.97003 * 119.99639 * 180.02562 * 16 15 13 41 41 H 1.07992 * 120.00385 * 359.97438 * 22 21 6 42 42 H 1.07995 * 119.99722 * 180.27368 * 23 22 21 43 43 H 1.08000 * 119.99603 * 179.83048 * 24 23 22 44 44 H 1.07995 * 120.00041 * 180.02562 * 25 24 23 45 45 H 1.08008 * 120.00322 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 -0.8355 5 6 3.5635 1.4449 -0.1413 6 6 1.6485 2.1220 1.3137 7 1 0.5629 2.1256 1.4115 8 6 2.1580 3.5402 1.3172 9 8 3.2812 3.7800 1.7067 10 7 1.3655 4.5419 0.8873 11 6 -0.0288 4.2705 0.5290 12 6 1.8983 5.9022 0.7784 13 6 2.4763 6.1066 -0.5982 14 1 2.4497 5.3035 -1.3198 15 6 3.0389 7.3190 -0.9367 16 7 3.0718 8.2969 -0.0579 17 14 3.7560 7.5721 -2.6430 18 1 3.5959 6.3274 -3.4368 19 1 3.0429 8.6852 -3.3195 20 1 5.1987 7.9052 -2.5293 21 6 2.2544 1.3677 2.4693 22 6 3.6217 1.3944 2.6712 23 6 4.1769 0.7061 3.7337 24 6 3.3659 -0.0162 4.5889 25 6 1.9992 -0.0471 4.3839 26 6 1.4435 0.6447 3.3239 27 1 -0.3633 0.4303 0.9333 28 1 -0.3633 -1.0234 -0.0939 29 1 -0.3634 0.5930 -0.8393 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8366 1.0960 -1.1371 33 1 3.9404 2.4571 0.0051 34 1 3.9988 0.7833 0.6076 35 1 -0.6677 4.4497 1.3937 36 1 -0.3289 4.9281 -0.2869 37 1 -0.1274 3.2319 0.2135 38 1 1.0964 6.6211 0.9462 39 1 2.6788 6.0476 1.5254 40 1 3.4673 9.1500 -0.2962 41 1 4.2557 1.9553 2.0006 42 1 5.2447 0.7305 3.8940 43 1 3.8001 -0.5561 5.4174 44 1 1.3655 -0.6111 5.0523 45 1 0.3756 0.6205 3.1638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:34 Heat of formation + Delta-G solvation = -37.831323 kcal Electronic energy + Delta-G solvation = -24226.520957 eV Core-core repulsion = 21014.869080 eV Total energy + Delta-G solvation = -3211.651877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74494 -39.56303 -37.36620 -36.58380 -34.71111 -32.67888 -31.95510 -30.60410 -30.19269 -28.26846 -27.20582 -25.05878 -24.28274 -23.26318 -22.74155 -21.04837 -19.82679 -18.67954 -17.91119 -17.52196 -17.02079 -16.64812 -16.40689 -15.89046 -15.71495 -15.20162 -14.86451 -14.56676 -14.47237 -14.11082 -14.09377 -13.72165 -13.57671 -13.46984 -13.31066 -13.18799 -13.11514 -12.83279 -12.66111 -12.62094 -12.40613 -12.20863 -11.98227 -11.93923 -11.68028 -11.56555 -11.40852 -11.27060 -10.66127 -10.32834 -9.65219 -9.50382 -9.37558 -8.23131 -6.38036 0.50933 0.62849 1.34763 1.36978 1.48798 1.84444 2.31951 2.46194 3.00203 3.06409 3.64095 3.72005 3.90070 4.06374 4.15607 4.21168 4.27625 4.39210 4.40787 4.44189 4.57331 4.64355 4.69111 4.73319 4.82559 4.85766 4.87209 4.97421 4.98509 5.00800 5.16179 5.21491 5.24506 5.26323 5.29902 5.38281 5.44502 5.56018 5.56741 5.65678 5.73540 5.84596 5.87225 6.05777 6.22604 6.70164 6.81275 7.28242 7.51544 8.84103 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004912 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.578533 B = 5698.949260 C = 6070.989140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.069 4.069 4 H 0.071 0.929 5 C -0.159 4.159 6 C -0.054 4.054 7 H 0.120 0.880 8 C 0.505 3.495 9 O -0.581 6.581 10 N -0.611 5.611 11 C 0.074 3.926 12 C 0.260 3.740 13 C -0.537 4.537 14 H 0.054 0.946 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.283 1.283 21 C -0.080 4.080 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.020 0.980 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -20.405 3.525 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.088 4.088 4 H 0.090 0.910 5 C -0.216 4.216 6 C -0.075 4.075 7 H 0.138 0.862 8 C 0.294 3.706 9 O -0.462 6.462 10 N -0.342 5.342 11 C -0.068 4.068 12 C 0.138 3.862 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.194 1.194 20 H -0.209 1.209 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.164 4.164 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.038 0.962 39 H 0.014 0.986 40 H 0.075 0.925 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.130 -20.072 3.741 21.627 hybrid contribution 0.922 1.180 -0.760 1.679 sum -6.209 -18.891 2.981 20.108 Atomic orbital electron populations 1.21849 0.94280 1.02585 1.02319 1.21508 0.97165 0.93343 1.02484 1.21019 0.95996 0.97659 0.94146 0.91028 1.22152 0.96325 1.01234 1.01858 1.20401 1.02092 0.89103 0.95877 0.86215 1.21083 0.85136 0.87900 0.76464 1.90582 1.21669 1.84829 1.49091 1.48155 1.12773 1.09156 1.64159 1.21986 0.80514 1.03071 1.01267 1.18723 0.93260 0.78501 0.95674 1.21700 1.38900 0.98220 0.98748 0.92773 1.25857 0.96058 0.95529 1.01696 1.70070 1.46008 1.04399 1.36479 0.85384 0.77936 0.78490 0.79114 1.18983 1.19395 1.20861 1.19432 0.93673 0.98618 0.96360 1.21548 0.95918 0.97308 0.98161 1.21375 1.00593 0.98645 0.95751 1.21434 0.94290 0.99043 0.99387 1.21402 0.95282 0.99972 0.97984 1.21272 1.00282 0.97011 0.94605 0.92036 0.91374 0.92361 0.91720 0.91158 0.91969 0.95012 0.91403 0.91403 0.91410 0.88690 0.96209 0.98551 0.92460 0.86740 0.85870 0.83982 0.83228 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.55 71.98 0.69 -1.64 16 2 C -0.11 -2.13 5.24 30.60 0.16 -1.97 16 3 C -0.07 -1.89 2.15 -10.79 -0.02 -1.91 16 4 H 0.07 2.02 8.04 -2.38 -0.02 2.00 16 5 C -0.16 -5.05 7.53 71.98 0.54 -4.51 16 6 C -0.05 -1.60 1.32 -12.29 -0.02 -1.62 16 7 H 0.12 2.85 4.51 -2.39 -0.01 2.84 16 8 C 0.51 21.47 5.94 87.65 0.52 21.99 16 9 O -0.58 -30.07 12.15 -3.02 -0.04 -30.10 16 10 N -0.61 -26.62 2.86 -851.16 -2.43 -29.05 16 11 C 0.07 2.26 10.08 127.77 1.29 3.55 16 12 C 0.26 14.37 5.22 85.63 0.45 14.82 16 13 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 14 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 17 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 C -0.08 -2.35 3.46 -19.86 -0.07 -2.42 16 22 C -0.11 -3.69 6.32 22.27 0.14 -3.54 16 23 C -0.15 -4.04 10.05 22.27 0.22 -3.82 16 24 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 25 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.11 -2.58 9.33 22.27 0.21 -2.37 16 27 H 0.06 0.86 6.69 -2.39 -0.02 0.84 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.34 6.75 -2.39 -0.02 1.32 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.29 5.77 -2.39 -0.01 1.27 16 34 H 0.07 2.05 5.61 -2.39 -0.01 2.04 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.16 8.10 -2.39 -0.02 2.14 16 37 H 0.09 2.23 5.89 -2.39 -0.01 2.21 16 38 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 39 H 0.00 -0.23 7.35 -2.39 -0.02 -0.25 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.11 4.51 4.43 -2.91 -0.01 4.50 16 42 H 0.12 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 44 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.14 2.41 7.81 -2.91 -0.02 2.38 16 Total: -1.00 -74.35 350.29 6.07 -68.28 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.96 Total: 18.74 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 5.26 Total: -18.44 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.15 Total: -85.85 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.04 Total: -30.10 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.35 6.07 -68.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.449 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds