Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47180 * 2 1 4 4 C 1.52998 * 109.47389 * 239.99550 * 2 1 3 5 5 C 1.52996 * 109.47389 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47338 * 60.00348 * 5 4 2 7 7 C 1.52998 * 109.46596 * 300.00137 * 6 5 4 8 8 C 1.52999 * 109.47740 * 59.99892 * 7 6 5 9 9 H 1.08998 * 109.47002 * 59.99444 * 8 7 6 10 10 N 1.46897 * 109.47205 * 180.02562 * 8 7 6 11 11 C 1.46897 * 110.99651 * 274.99638 * 10 8 7 12 12 C 1.50701 * 109.47200 * 180.02562 * 11 10 8 13 13 C 1.38306 * 119.93070 * 269.72949 * 12 11 10 14 14 C 1.38104 * 120.06454 * 179.72209 * 13 12 11 15 15 C 1.38874 * 119.93406 * 0.56887 * 14 13 12 16 16 O 1.35745 * 120.07187 * 179.68512 * 15 14 13 17 17 C 1.34826 * 117.00374 * 174.48892 * 16 15 14 18 18 H 1.08005 * 120.00216 * 5.05675 * 17 16 15 19 19 C 1.38655 * 120.00240 * 185.05324 * 17 16 15 20 20 N 1.31553 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47011 * 120.00337 * 21 19 17 24 24 H 1.48498 * 109.46908 * 240.00038 * 21 19 17 25 25 C 1.38882 * 119.86237 * 359.70504 * 15 14 13 26 26 C 1.38102 * 119.92692 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47284 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47186 * 300.00510 * 1 2 3 29 29 H 1.09001 * 109.47289 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.47327 * 300.00360 * 4 2 1 31 31 H 1.09004 * 109.47039 * 59.99993 * 4 2 1 32 32 H 1.09003 * 109.47186 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47284 * 299.99717 * 5 4 2 34 34 H 1.08993 * 109.47447 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47143 * 59.99472 * 6 5 4 36 36 H 1.08998 * 109.47327 * 299.99534 * 7 6 5 37 37 H 1.09004 * 109.47039 * 179.97438 * 7 6 5 38 38 H 1.00891 * 111.00369 * 38.95136 * 10 8 7 39 39 H 1.08997 * 109.47649 * 300.00074 * 11 10 8 40 40 H 1.08999 * 109.47131 * 60.00517 * 11 10 8 41 41 H 1.07999 * 119.96379 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.02958 * 180.27842 * 14 13 12 43 43 H 0.97005 * 120.00202 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.03547 * 179.97438 * 25 15 14 45 45 H 1.08002 * 119.96040 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6757 -1.7491 1.2491 10 7 1.5499 -0.0284 2.4484 11 6 1.4865 -0.9431 3.5961 12 6 0.9805 -0.1985 4.8046 13 6 1.8749 0.4273 5.6540 14 6 1.4138 1.1153 6.7591 15 6 0.0516 1.1685 7.0237 16 8 -0.4042 1.8386 8.1127 17 6 -1.7410 1.9484 8.2488 18 1 -2.3977 1.4443 7.5551 19 6 -2.2730 2.7083 9.2794 20 7 -1.4733 3.3218 10.1247 21 14 -4.1253 2.8597 9.4683 22 1 -4.7974 2.0798 8.3981 23 1 -4.5322 2.3326 10.7955 24 1 -4.5187 4.2876 9.3609 25 6 -0.8436 0.5343 6.1720 26 6 -0.3767 -0.1474 5.0654 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3057 -1.2487 34 1 5.1694 -1.4435 0.0009 35 1 3.7158 -2.4709 0.0003 36 1 3.9332 0.3054 1.2498 37 1 3.9320 -1.2365 2.1396 38 1 2.1202 0.7768 2.6588 39 1 0.8098 -1.7665 3.3676 40 1 2.4817 -1.3371 3.8021 41 1 2.9345 0.3812 5.4505 42 1 2.1124 1.6075 7.4195 43 1 -1.8454 3.8538 10.8455 44 1 -1.9035 0.5736 6.3753 45 1 -1.0724 -0.6404 4.4025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034991772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -31.758085 kcal Electronic energy + Delta-G solvation = -22487.316903 eV Core-core repulsion = 19275.928381 eV Total energy + Delta-G solvation = -3211.388521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.48217 -38.89476 -36.80233 -34.66451 -32.65935 -32.27600 -30.52525 -30.11793 -28.27922 -26.14815 -25.41418 -23.97905 -22.13571 -21.89118 -21.22141 -20.56738 -19.81915 -17.95568 -16.93022 -15.98627 -15.32410 -14.84429 -14.62975 -14.54247 -14.41345 -14.21609 -13.99268 -13.59618 -13.53273 -13.16368 -12.92879 -12.66825 -12.62738 -12.33786 -12.04896 -11.85128 -11.65870 -11.44645 -11.30984 -11.25598 -11.04703 -10.82151 -10.70683 -10.59215 -10.57131 -10.44775 -10.40708 -10.11110 -9.30177 -8.82143 -8.22274 -8.13018 -7.15337 -6.43648 -4.02233 2.24909 2.32409 3.13323 3.15188 3.20699 3.98149 4.19648 4.47932 4.57652 4.64080 4.84901 4.95864 4.99955 5.11621 5.25673 5.27712 5.28066 5.32844 5.34367 5.43488 5.49572 5.56657 5.66436 5.76273 5.80724 5.83313 5.85833 5.89585 5.90771 5.95086 6.01069 6.06477 6.16605 6.24146 6.33514 6.45092 6.48157 6.73118 6.94045 7.06637 7.19999 7.25457 7.43698 7.46776 7.55783 7.86051 8.01919 9.02396 9.72964 10.74594 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031318 B = 0.002801 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.847831 B = 9994.563389 C =10573.266415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.092 3.908 9 H 0.073 0.927 10 N -0.677 5.677 11 C 0.119 3.881 12 C -0.183 4.183 13 C -0.069 4.069 14 C -0.194 4.194 15 C 0.155 3.845 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.235 4.235 26 C -0.049 4.049 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.341 0.659 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 -8.416 -19.637 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.189 4.189 8 C -0.018 4.018 9 H 0.092 0.908 10 N -0.307 5.307 11 C -0.009 4.009 12 C -0.185 4.185 13 C -0.088 4.088 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.254 4.254 26 C -0.068 4.068 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.928 -8.239 -19.382 22.171 hybrid contribution 0.049 -0.002 0.351 0.354 sum 6.977 -8.242 -19.031 21.882 Atomic orbital electron populations 1.21698 0.94624 1.01339 1.01882 1.21062 0.96288 0.99255 0.93077 0.91471 1.21618 0.95123 1.00729 0.97810 1.21545 0.96020 1.00661 0.97532 1.21462 0.99950 0.99334 0.94549 1.22298 0.97600 1.00989 0.98043 1.21619 0.91554 0.97905 0.90748 0.90844 1.60657 1.57035 1.09666 1.03350 1.20626 0.98245 0.93960 0.88072 1.19131 0.93641 1.07319 0.98365 1.20474 0.97780 0.96495 0.94043 1.20164 0.93176 1.07215 1.00767 1.19392 0.92737 0.90781 0.86924 1.83973 1.25167 1.63628 1.35492 1.21380 0.78879 1.31732 1.14682 0.89010 1.25290 1.00442 0.95561 0.95273 1.70049 1.35101 1.29624 1.15101 0.85648 0.80652 0.78497 0.78649 1.19076 1.20173 1.20148 1.21170 1.00318 1.05550 0.98402 1.20566 0.94282 0.96596 0.95351 0.93546 0.90872 0.93835 0.92144 0.92045 0.92307 0.92092 0.92330 0.92121 0.91844 0.92139 0.84080 0.91396 0.95567 0.87585 0.86695 0.92103 0.85645 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.03 37.16 0.34 -1.08 16 2 C -0.08 -0.74 2.43 -90.62 -0.22 -0.96 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 6 C -0.11 -0.90 5.92 -26.73 -0.16 -1.05 16 7 C -0.15 -1.35 5.17 -26.73 -0.14 -1.49 16 8 C 0.09 0.92 1.91 -67.71 -0.13 0.79 16 9 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 10 N -0.68 -8.22 5.47 -108.00 -0.59 -8.81 16 11 C 0.12 1.59 5.61 -4.98 -0.03 1.56 16 12 C -0.18 -3.09 5.40 -104.57 -0.56 -3.66 16 13 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 14 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 15 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 16 O -0.18 -5.16 9.76 0.08 0.00 -5.16 16 17 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 18 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 25 C -0.24 -5.17 9.17 -39.39 -0.36 -5.53 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.89 7.60 -51.93 -0.39 0.50 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.34 4.22 8.46 -39.30 -0.33 3.88 16 39 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 40 H 0.03 0.33 7.38 -51.93 -0.38 -0.05 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.11 2.37 8.06 -52.48 -0.42 1.94 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 45 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -29.44 357.97 -9.76 -39.20 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.52 Total: 5.62 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.79 Total: -27.15 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.17 Total: -33.56 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.44 -9.76 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.446 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds