Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47180 * 2 1 4 4 C 1.52998 * 109.47389 * 239.99550 * 2 1 3 5 5 C 1.52996 * 109.47389 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47338 * 60.00348 * 5 4 2 7 7 C 1.52998 * 109.46596 * 300.00137 * 6 5 4 8 8 C 1.52999 * 109.47740 * 59.99892 * 7 6 5 9 9 H 1.08998 * 109.47002 * 59.99444 * 8 7 6 10 10 N 1.46897 * 109.47205 * 180.02562 * 8 7 6 11 11 C 1.46897 * 110.99651 * 274.99638 * 10 8 7 12 12 C 1.50701 * 109.47200 * 180.02562 * 11 10 8 13 13 C 1.38306 * 119.93070 * 269.72949 * 12 11 10 14 14 C 1.38104 * 120.06454 * 179.72209 * 13 12 11 15 15 C 1.38874 * 119.93406 * 0.56887 * 14 13 12 16 16 O 1.35745 * 120.07187 * 179.68512 * 15 14 13 17 17 C 1.34826 * 117.00374 * 174.48892 * 16 15 14 18 18 H 1.08005 * 120.00216 * 5.05675 * 17 16 15 19 19 C 1.38655 * 120.00240 * 185.05324 * 17 16 15 20 20 N 1.31553 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47011 * 120.00337 * 21 19 17 24 24 H 1.48498 * 109.46908 * 240.00038 * 21 19 17 25 25 C 1.38882 * 119.86237 * 359.70504 * 15 14 13 26 26 C 1.38102 * 119.92692 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47284 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47186 * 300.00510 * 1 2 3 29 29 H 1.09001 * 109.47289 * 60.00004 * 1 2 3 30 30 H 1.08998 * 109.47327 * 300.00360 * 4 2 1 31 31 H 1.09004 * 109.47039 * 59.99993 * 4 2 1 32 32 H 1.09003 * 109.47186 * 180.02562 * 5 4 2 33 33 H 1.09003 * 109.47284 * 299.99717 * 5 4 2 34 34 H 1.08993 * 109.47447 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47143 * 59.99472 * 6 5 4 36 36 H 1.08998 * 109.47327 * 299.99534 * 7 6 5 37 37 H 1.09004 * 109.47039 * 179.97438 * 7 6 5 38 38 H 1.00891 * 111.00369 * 38.95136 * 10 8 7 39 39 H 1.08997 * 109.47649 * 300.00074 * 11 10 8 40 40 H 1.08999 * 109.47131 * 60.00517 * 11 10 8 41 41 H 1.07999 * 119.96379 * 359.97438 * 13 12 11 42 42 H 1.08003 * 120.02958 * 180.27842 * 14 13 12 43 43 H 0.97005 * 120.00202 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.03547 * 179.97438 * 25 15 14 45 45 H 1.08002 * 119.96040 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6757 -1.7491 1.2491 10 7 1.5499 -0.0284 2.4484 11 6 1.4865 -0.9431 3.5961 12 6 0.9805 -0.1985 4.8046 13 6 1.8749 0.4273 5.6540 14 6 1.4138 1.1153 6.7591 15 6 0.0516 1.1685 7.0237 16 8 -0.4042 1.8386 8.1127 17 6 -1.7410 1.9484 8.2488 18 1 -2.3977 1.4443 7.5551 19 6 -2.2730 2.7083 9.2794 20 7 -1.4733 3.3218 10.1247 21 14 -4.1253 2.8597 9.4683 22 1 -4.7974 2.0798 8.3981 23 1 -4.5322 2.3326 10.7955 24 1 -4.5187 4.2876 9.3609 25 6 -0.8436 0.5343 6.1720 26 6 -0.3767 -0.1474 5.0654 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3057 -1.2487 34 1 5.1694 -1.4435 0.0009 35 1 3.7158 -2.4709 0.0003 36 1 3.9332 0.3054 1.2498 37 1 3.9320 -1.2365 2.1396 38 1 2.1202 0.7768 2.6588 39 1 0.8098 -1.7665 3.3676 40 1 2.4817 -1.3371 3.8021 41 1 2.9345 0.3812 5.4505 42 1 2.1124 1.6075 7.4195 43 1 -1.8454 3.8538 10.8455 44 1 -1.9035 0.5736 6.3753 45 1 -1.0724 -0.6404 4.4025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034991772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -48.010678 kcal Electronic energy + Delta-G solvation = -22488.021668 eV Core-core repulsion = 19275.928381 eV Total energy + Delta-G solvation = -3212.093287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82166 -40.08318 -38.43443 -35.73846 -34.26720 -33.36720 -31.83640 -31.64251 -29.37875 -27.54063 -26.79710 -25.20599 -23.61365 -22.88576 -22.02503 -21.89140 -20.65934 -19.82399 -18.81409 -17.00210 -16.45312 -16.31560 -16.07329 -15.70460 -15.52535 -15.41673 -15.19402 -14.93310 -14.78356 -14.45459 -14.19441 -14.08415 -13.69528 -13.53703 -13.13707 -13.06208 -12.92875 -12.67166 -12.43419 -12.37007 -12.21477 -12.11842 -12.02510 -11.99270 -11.67987 -11.30149 -11.21150 -11.12972 -10.91877 -10.78006 -9.75818 -9.17762 -8.86562 -8.47178 -6.15061 0.62013 0.69965 1.34956 1.43202 1.53379 2.17866 2.79723 3.11725 3.48452 3.53473 3.77502 3.89985 4.06637 4.09108 4.14895 4.22285 4.29391 4.31784 4.50057 4.56416 4.60566 4.62302 4.66362 4.68444 4.74763 4.84425 4.90681 4.97101 5.10685 5.12186 5.15332 5.17495 5.21338 5.25002 5.32336 5.34921 5.39841 5.46911 5.58271 5.59744 5.64837 5.73543 5.85009 6.03827 6.20163 6.30180 6.56115 6.97932 7.79303 8.76458 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031318 B = 0.002801 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.847831 B = 9994.563389 C =10573.266415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.146 4.146 8 C 0.096 3.904 9 H 0.074 0.926 10 N -0.685 5.685 11 C 0.125 3.875 12 C -0.155 4.155 13 C -0.060 4.060 14 C -0.205 4.205 15 C 0.113 3.887 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.252 1.252 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.244 4.244 26 C -0.050 4.050 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.340 0.660 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.272 0.728 44 H 0.115 0.885 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 -10.192 -22.644 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.185 4.185 8 C -0.013 4.013 9 H 0.092 0.908 10 N -0.315 5.315 11 C -0.004 4.004 12 C -0.156 4.156 13 C -0.078 4.078 14 C -0.224 4.224 15 C 0.063 3.937 16 O -0.141 6.141 17 C -0.488 4.488 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.263 4.263 26 C -0.069 4.069 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.429 -10.052 -22.447 25.692 hybrid contribution 0.118 0.391 0.992 1.073 sum 7.547 -9.661 -21.455 24.710 Atomic orbital electron populations 1.21655 0.95244 1.01204 1.01150 1.21040 0.95684 0.99061 0.93673 0.92190 1.21583 0.95569 1.00669 0.97086 1.21539 0.95475 1.00693 0.97904 1.21457 1.00391 0.99296 0.93988 1.22240 0.96562 1.01045 0.98676 1.21617 0.92354 0.97582 0.89791 0.90819 1.60598 1.57748 1.09663 1.03491 1.20595 0.99296 0.93711 0.86756 1.19639 0.92803 1.04532 0.98643 1.20877 0.99983 0.94698 0.92265 1.20435 0.92045 1.07875 1.02065 1.19940 0.94450 0.92004 0.87312 1.83935 1.25459 1.66458 1.38201 1.21848 0.79367 1.32286 1.15320 0.88240 1.26587 1.06069 0.94869 0.94572 1.70189 1.37704 1.31643 1.16478 0.84529 0.73655 0.78877 0.79141 1.17536 1.19253 1.19324 1.21249 0.99664 1.06101 0.99302 1.20887 0.95807 0.95825 0.94370 0.93332 0.92999 0.93186 0.91855 0.91526 0.91195 0.92303 0.91651 0.91828 0.92084 0.92252 0.84147 0.90408 0.93713 0.83701 0.87031 0.91852 0.86676 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.03 71.98 0.65 -1.84 16 2 C -0.08 -1.24 2.43 -10.79 -0.03 -1.27 16 3 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 5 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 6 C -0.11 -1.40 5.92 30.59 0.18 -1.21 16 7 C -0.15 -2.15 5.17 30.59 0.16 -1.99 16 8 C 0.10 1.63 1.91 44.92 0.09 1.71 16 9 H 0.07 1.28 7.80 -2.39 -0.02 1.27 16 10 N -0.69 -14.46 5.47 -495.59 -2.71 -17.17 16 11 C 0.12 2.82 5.61 85.56 0.48 3.30 16 12 C -0.16 -4.78 5.40 -19.83 -0.11 -4.89 16 13 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 14 C -0.20 -8.80 9.99 22.39 0.22 -8.57 16 15 C 0.11 5.74 6.65 22.58 0.15 5.89 16 16 O -0.23 -14.34 9.76 -22.64 -0.22 -14.56 16 17 C -0.41 -24.46 9.49 67.92 0.64 -23.81 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 20 N -0.92 -57.34 13.67 21.61 0.30 -57.04 16 21 Si 1.02 43.57 29.55 68.60 2.03 45.59 16 22 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 C -0.24 -10.89 9.17 22.39 0.21 -10.69 16 26 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 37 H 0.06 0.90 7.45 -2.38 -0.02 0.88 16 38 H 0.34 7.37 8.46 -89.70 -0.76 6.61 16 39 H 0.08 1.69 8.00 -2.39 -0.02 1.67 16 40 H 0.04 0.90 7.38 -2.39 -0.02 0.88 16 41 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 45 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -68.25 357.97 3.48 -64.77 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.20 Total: 28.54 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.88 Total: -50.13 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.42 Total: -74.21 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.56 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.25 3.48 -64.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.757 kcal (2) G-P(sol) polarization free energy of solvation -68.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds