Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52996 * 109.47294 * 119.99891 * 2 1 3 5 5 C 1.53000 * 109.47213 * 59.99769 * 4 2 1 6 6 C 1.53002 * 109.46596 * 60.00484 * 5 4 2 7 7 C 1.53006 * 109.46945 * 299.99741 * 6 5 4 8 8 C 1.52992 * 109.47017 * 60.00269 * 7 6 5 9 9 H 1.08998 * 109.47202 * 60.00330 * 8 7 6 10 10 N 1.46905 * 109.47030 * 179.97438 * 8 7 6 11 11 C 1.46892 * 111.00178 * 275.00085 * 10 8 7 12 12 C 1.50705 * 109.47233 * 180.02562 * 11 10 8 13 13 C 1.38291 * 119.93243 * 89.99811 * 12 11 10 14 14 C 1.38102 * 120.07287 * 180.02562 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08000 * 119.99528 * 354.94272 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31558 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47120 * 60.00042 * 21 19 17 24 24 H 1.48505 * 109.46916 * 299.99937 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 H 1.08999 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46900 * 299.99779 * 1 2 3 29 29 H 1.08997 * 109.46812 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.47248 * 300.00447 * 4 2 1 31 31 H 1.09002 * 109.47449 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47114 * 300.00425 * 5 4 2 33 33 H 1.08998 * 109.47438 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46947 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47660 * 59.99647 * 6 5 4 36 36 H 1.09000 * 109.46887 * 299.99842 * 7 6 5 37 37 H 1.08995 * 109.46927 * 180.02562 * 7 6 5 38 38 H 1.00903 * 111.00045 * 151.04474 * 10 8 7 39 39 H 1.08998 * 109.47231 * 60.00062 * 11 10 8 40 40 H 1.08997 * 109.47246 * 300.00061 * 11 10 8 41 41 H 1.07996 * 119.96908 * 0.02562 * 13 12 11 42 42 H 1.08001 * 120.03888 * 180.02562 * 14 13 12 43 43 H 0.96997 * 120.00087 * 0.02562 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.08001 * 119.96884 * 180.23281 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2493 6 6 2.0402 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2492 8 6 2.0401 -0.7212 -1.2492 9 1 3.1301 -0.7212 -1.2493 10 7 1.5509 -0.0289 -2.4490 11 6 2.4349 -0.2749 -3.5960 12 6 1.9025 0.4501 -4.8052 13 6 2.3070 1.7466 -5.0660 14 6 1.8205 2.4138 -6.1729 15 6 0.9238 1.7816 -7.0243 16 8 0.4434 2.4350 -8.1130 17 6 0.9622 3.6515 -8.3751 18 1 1.6644 4.0986 -7.6872 19 6 0.5943 4.3284 -9.5279 20 7 -0.2615 3.7839 -10.3657 21 14 1.3137 6.0135 -9.8914 22 1 0.7635 6.5204 -11.1743 23 1 2.7915 5.9095 -9.9928 24 1 0.9573 6.9507 -8.7959 25 6 0.5150 0.4816 -6.7565 26 6 1.0092 -0.1821 -5.6509 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -0.2074 2.1392 31 1 3.1301 -0.7208 1.2495 32 1 0.4401 -2.1637 1.2493 33 1 1.8938 -2.6777 2.1390 34 1 1.6765 -3.9125 -0.0001 35 1 3.1302 -2.8849 0.0000 36 1 0.4401 -2.1638 -1.2492 37 1 1.8931 -2.6777 -2.1391 38 1 1.4464 0.9601 -2.2785 39 1 2.4745 -1.3446 -3.8015 40 1 3.4368 0.0883 -3.3670 41 1 3.0040 2.2379 -4.4033 42 1 2.1371 3.4262 -6.3763 43 1 -0.6354 2.9090 -10.1768 44 1 -0.1856 -0.0111 -7.4143 45 1 0.6947 -1.1944 -5.4441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034991773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = -33.185733 kcal Electronic energy + Delta-G solvation = -22559.117190 eV Core-core repulsion = 19347.666761 eV Total energy + Delta-G solvation = -3211.450429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70342 -39.04534 -36.95586 -34.75539 -32.34172 -32.08678 -30.52772 -30.18817 -28.43522 -26.46933 -25.11791 -24.12412 -22.36953 -21.91712 -21.66190 -20.47247 -18.70586 -18.35039 -16.92328 -16.16604 -15.47127 -15.29837 -14.99415 -14.65335 -14.37239 -14.02752 -13.94978 -13.69548 -13.59423 -13.20652 -13.07289 -12.76443 -12.73355 -12.35270 -12.22741 -11.83848 -11.67653 -11.30564 -11.24818 -11.18177 -11.01460 -10.82477 -10.70686 -10.45709 -10.30941 -10.29065 -10.17639 -10.14022 -9.39608 -8.76748 -8.32880 -8.20693 -7.23955 -6.76681 -4.05777 2.17715 2.24659 3.23553 3.28338 3.45142 4.11833 4.13738 4.46603 4.50026 4.61261 4.82631 4.98191 5.07993 5.09525 5.12742 5.20110 5.22646 5.31003 5.36069 5.37475 5.42583 5.51179 5.62962 5.68805 5.77253 5.78976 5.81547 5.84822 5.85386 5.93668 5.96502 6.13155 6.14061 6.16422 6.22593 6.38693 6.41344 6.65206 6.84469 7.04209 7.16554 7.27305 7.32837 7.50457 7.57412 7.74947 8.40706 8.92660 9.61939 10.67431 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.002711 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.074401 B =10326.870490 C =10631.157033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.092 3.908 9 H 0.038 0.962 10 N -0.679 5.679 11 C 0.118 3.882 12 C -0.181 4.181 13 C -0.066 4.066 14 C -0.230 4.230 15 C 0.158 3.842 16 O -0.203 6.203 17 C -0.472 4.472 18 H 0.083 0.917 19 C 0.010 3.990 20 N -0.882 5.882 21 Si 1.096 2.904 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.197 4.197 26 C -0.051 4.051 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.341 0.659 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.282 0.718 44 H 0.114 0.886 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -9.408 20.958 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.018 4.018 9 H 0.056 0.944 10 N -0.311 5.311 11 C -0.010 4.010 12 C -0.182 4.182 13 C -0.085 4.085 14 C -0.250 4.250 15 C 0.105 3.895 16 O -0.107 6.107 17 C -0.548 4.548 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.920 3.080 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.216 4.216 26 C -0.070 4.070 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.160 0.840 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.132 0.868 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.548 -8.693 19.457 21.790 hybrid contribution 0.929 -0.628 1.449 1.832 sum 5.477 -9.322 20.905 23.536 Atomic orbital electron populations 1.21849 0.94419 1.02245 1.01602 1.21257 0.97056 0.98637 0.94187 0.91655 1.21538 1.00307 0.95797 0.97374 1.21575 1.01187 0.95477 0.97616 1.21541 1.00507 0.98848 0.94837 1.21557 1.01784 0.94373 0.96949 1.21511 0.96461 0.94518 0.89280 0.94401 1.60596 1.50901 1.15917 1.03665 1.20653 0.92476 0.99344 0.88507 1.19153 1.04668 0.95671 0.98711 1.20601 0.98080 0.93723 0.96101 1.21128 1.04137 1.01801 0.97908 1.19252 0.91492 0.91149 0.87600 1.83664 1.56839 1.31146 1.39075 1.22194 1.29578 0.92505 1.10514 0.89944 1.26533 0.96765 1.05475 0.90800 1.70571 1.25814 1.18583 1.36383 0.83111 0.75676 0.72172 0.77079 1.19766 1.20762 1.20747 1.20206 1.06728 0.93561 1.01145 1.20454 0.95146 0.98400 0.93021 0.92108 0.93566 0.91585 0.92005 0.92276 0.91534 0.92418 0.92083 0.92386 0.90914 0.92265 0.84017 0.91227 0.95629 0.87888 0.85579 0.90797 0.86765 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.34 37.16 0.31 -1.03 16 2 C -0.09 -0.83 2.57 -90.62 -0.23 -1.07 16 3 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 4 C -0.11 -0.87 5.45 -26.73 -0.15 -1.01 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 7 C -0.11 -1.05 5.15 -26.73 -0.14 -1.19 16 8 C 0.09 0.94 2.18 -67.72 -0.15 0.79 16 9 H 0.04 0.40 7.80 -51.93 -0.40 0.00 16 10 N -0.68 -8.33 5.58 -108.00 -0.60 -8.93 16 11 C 0.12 1.60 5.61 -4.98 -0.03 1.57 16 12 C -0.18 -3.07 5.40 -104.57 -0.56 -3.64 16 13 C -0.07 -1.22 9.69 -39.61 -0.38 -1.60 16 14 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 15 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 16 O -0.20 -5.79 9.16 0.07 0.00 -5.79 16 17 C -0.47 -13.41 9.49 30.88 0.29 -13.12 16 18 H 0.08 2.20 5.20 -52.49 -0.27 1.93 16 19 C 0.01 0.27 5.49 -17.52 -0.10 0.17 16 20 N -0.88 -26.54 13.70 55.48 0.76 -25.78 16 21 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -4.20 9.99 -39.40 -0.39 -4.60 16 26 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 27 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 37 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 38 H 0.34 4.26 8.18 -39.29 -0.32 3.94 16 39 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 40 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 43 H 0.28 8.69 7.97 -40.82 -0.33 8.36 16 44 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16 45 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -29.78 350.04 -9.63 -39.41 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.13 Total: 7.13 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.84 Total: -30.05 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.16 Total: -34.72 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.78 -9.63 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.228 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds