Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52996 * 109.47294 * 119.99891 * 2 1 3 5 5 C 1.53000 * 109.47213 * 59.99769 * 4 2 1 6 6 C 1.53002 * 109.46596 * 60.00484 * 5 4 2 7 7 C 1.53006 * 109.46945 * 299.99741 * 6 5 4 8 8 C 1.52992 * 109.47017 * 60.00269 * 7 6 5 9 9 H 1.08998 * 109.47202 * 60.00330 * 8 7 6 10 10 N 1.46905 * 109.47030 * 179.97438 * 8 7 6 11 11 C 1.46892 * 111.00178 * 275.00085 * 10 8 7 12 12 C 1.50705 * 109.47233 * 180.02562 * 11 10 8 13 13 C 1.38291 * 119.93243 * 89.99811 * 12 11 10 14 14 C 1.38102 * 120.07287 * 180.02562 * 13 12 11 15 15 C 1.38885 * 119.92439 * 0.02562 * 14 13 12 16 16 O 1.35749 * 120.06407 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00532 * 5.53097 * 16 15 14 18 18 H 1.08000 * 119.99528 * 354.94272 * 17 16 15 19 19 C 1.38650 * 120.00451 * 174.94170 * 17 16 15 20 20 N 1.31558 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47246 * 180.02562 * 21 19 17 23 23 H 1.48494 * 109.47120 * 60.00042 * 21 19 17 24 24 H 1.48505 * 109.46916 * 299.99937 * 21 19 17 25 25 C 1.38878 * 119.86442 * 0.25280 * 15 14 13 26 26 C 1.38094 * 119.93045 * 359.49209 * 25 15 14 27 27 H 1.08999 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46900 * 299.99779 * 1 2 3 29 29 H 1.08997 * 109.46812 * 59.99893 * 1 2 3 30 30 H 1.09003 * 109.47248 * 300.00447 * 4 2 1 31 31 H 1.09002 * 109.47449 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47114 * 300.00425 * 5 4 2 33 33 H 1.08998 * 109.47438 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46947 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47660 * 59.99647 * 6 5 4 36 36 H 1.09000 * 109.46887 * 299.99842 * 7 6 5 37 37 H 1.08995 * 109.46927 * 180.02562 * 7 6 5 38 38 H 1.00903 * 111.00045 * 151.04474 * 10 8 7 39 39 H 1.08998 * 109.47231 * 60.00062 * 11 10 8 40 40 H 1.08997 * 109.47246 * 300.00061 * 11 10 8 41 41 H 1.07996 * 119.96908 * 0.02562 * 13 12 11 42 42 H 1.08001 * 120.03888 * 180.02562 * 14 13 12 43 43 H 0.96997 * 120.00087 * 0.02562 * 20 19 17 44 44 H 1.07997 * 120.03571 * 179.72341 * 25 15 14 45 45 H 1.08001 * 119.96884 * 180.23281 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2493 6 6 2.0402 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2492 8 6 2.0401 -0.7212 -1.2492 9 1 3.1301 -0.7212 -1.2493 10 7 1.5509 -0.0289 -2.4490 11 6 2.4349 -0.2749 -3.5960 12 6 1.9025 0.4501 -4.8052 13 6 2.3070 1.7466 -5.0660 14 6 1.8205 2.4138 -6.1729 15 6 0.9238 1.7816 -7.0243 16 8 0.4434 2.4350 -8.1130 17 6 0.9622 3.6515 -8.3751 18 1 1.6644 4.0986 -7.6872 19 6 0.5943 4.3284 -9.5279 20 7 -0.2615 3.7839 -10.3657 21 14 1.3137 6.0135 -9.8914 22 1 0.7635 6.5204 -11.1743 23 1 2.7915 5.9095 -9.9928 24 1 0.9573 6.9507 -8.7959 25 6 0.5150 0.4816 -6.7565 26 6 1.0092 -0.1821 -5.6509 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -0.2074 2.1392 31 1 3.1301 -0.7208 1.2495 32 1 0.4401 -2.1637 1.2493 33 1 1.8938 -2.6777 2.1390 34 1 1.6765 -3.9125 -0.0001 35 1 3.1302 -2.8849 0.0000 36 1 0.4401 -2.1638 -1.2492 37 1 1.8931 -2.6777 -2.1391 38 1 1.4464 0.9601 -2.2785 39 1 2.4745 -1.3446 -3.8015 40 1 3.4368 0.0883 -3.3670 41 1 3.0040 2.2379 -4.4033 42 1 2.1371 3.4262 -6.3763 43 1 -0.6354 2.9090 -10.1768 44 1 -0.1856 -0.0111 -7.4143 45 1 0.6947 -1.1944 -5.4441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034991773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = -49.892455 kcal Electronic energy + Delta-G solvation = -22559.841648 eV Core-core repulsion = 19347.666761 eV Total energy + Delta-G solvation = -3212.174887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95458 -40.33010 -38.61579 -35.85758 -34.28897 -32.84809 -31.89184 -31.65718 -29.52920 -27.39258 -26.93086 -25.44141 -23.61949 -23.09077 -22.50921 -21.95008 -20.25824 -19.43337 -18.72804 -17.15739 -16.94090 -16.39357 -15.98055 -15.89265 -15.66326 -15.61784 -15.43713 -15.07994 -14.84126 -14.68596 -14.22031 -13.89641 -13.49835 -13.40298 -13.28225 -12.92171 -12.86071 -12.53175 -12.44766 -12.37662 -12.17004 -12.07927 -11.96876 -11.93888 -11.81183 -11.27974 -11.19083 -10.93289 -10.86020 -10.74408 -9.84842 -9.30577 -8.99289 -8.93744 -6.25074 0.53183 0.60992 1.47992 1.60560 1.78279 2.35571 2.76652 3.07854 3.32405 3.41839 3.75938 3.82326 3.98493 4.03850 4.10834 4.16139 4.30752 4.38000 4.43937 4.47993 4.54011 4.56072 4.63239 4.68037 4.71243 4.76149 4.86750 4.98370 5.00780 5.08496 5.11371 5.17987 5.22244 5.23396 5.26990 5.30394 5.43386 5.46959 5.48671 5.52833 5.69703 5.70331 5.76673 6.04348 6.20212 6.29995 6.50680 6.86087 7.62602 8.50011 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035521 B = 0.002711 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.074401 B =10326.870490 C =10631.157033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.095 3.905 9 H 0.041 0.959 10 N -0.686 5.686 11 C 0.123 3.877 12 C -0.152 4.152 13 C -0.063 4.063 14 C -0.240 4.240 15 C 0.115 3.885 16 O -0.254 6.254 17 C -0.488 4.488 18 H 0.091 0.909 19 C -0.045 4.045 20 N -0.918 5.918 21 Si 1.145 2.855 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.260 1.260 25 C -0.206 4.206 26 C -0.047 4.047 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.340 0.660 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.260 0.740 44 H 0.112 0.888 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -10.196 24.289 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.014 4.014 9 H 0.059 0.941 10 N -0.317 5.317 11 C -0.005 4.005 12 C -0.153 4.153 13 C -0.081 4.081 14 C -0.259 4.259 15 C 0.066 3.934 16 O -0.161 6.161 17 C -0.563 4.563 18 H 0.108 0.892 19 C -0.241 4.241 20 N -0.553 5.553 21 Si 0.961 3.039 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.066 4.066 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.478 -9.528 22.856 25.596 hybrid contribution 0.404 -0.660 0.747 1.075 sum 6.881 -10.188 23.603 26.613 Atomic orbital electron populations 1.21808 0.94795 1.02062 1.01120 1.21243 0.96647 0.98710 0.94314 0.91671 1.21525 1.00520 0.95844 0.96863 1.21574 1.01040 0.95335 0.97810 1.21519 1.00670 0.99034 0.94194 1.21539 1.01173 0.94169 0.97647 1.21546 0.96559 0.94617 0.88723 0.94106 1.60554 1.50813 1.16119 1.04237 1.20634 0.93101 0.99508 0.87265 1.19663 1.01853 0.94901 0.98852 1.20951 0.97948 0.94171 0.95043 1.21240 1.04077 1.01714 0.98907 1.19825 0.93387 0.92554 0.87670 1.83643 1.59168 1.31805 1.41531 1.22582 1.29735 0.93052 1.10978 0.89157 1.28408 0.96295 1.08980 0.90453 1.70710 1.28658 1.18081 1.37835 0.82591 0.76096 0.67819 0.77440 1.19803 1.18457 1.18421 1.20472 1.06890 0.92813 1.02327 1.20844 0.94488 0.99605 0.91629 0.92140 0.92795 0.93313 0.91258 0.91883 0.91804 0.91269 0.91476 0.92032 0.91868 0.92845 0.84101 0.90045 0.94078 0.84399 0.86596 0.93206 0.86949 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.34 71.98 0.60 -1.73 16 2 C -0.09 -1.37 2.57 -10.79 -0.03 -1.40 16 3 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 4 C -0.11 -1.35 5.45 30.59 0.17 -1.18 16 5 C -0.12 -1.42 5.65 30.59 0.17 -1.25 16 6 C -0.12 -1.51 5.92 30.60 0.18 -1.33 16 7 C -0.11 -1.77 5.15 30.59 0.16 -1.62 16 8 C 0.09 1.63 2.18 44.91 0.10 1.72 16 9 H 0.04 0.71 7.80 -2.39 -0.02 0.69 16 10 N -0.69 -14.55 5.58 -495.60 -2.77 -17.32 16 11 C 0.12 2.82 5.61 85.56 0.48 3.30 16 12 C -0.15 -4.68 5.40 -19.83 -0.11 -4.79 16 13 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 14 C -0.24 -10.64 9.17 22.39 0.21 -10.43 16 15 C 0.12 5.83 6.65 22.58 0.15 5.98 16 16 O -0.25 -15.39 9.16 -22.68 -0.21 -15.60 16 17 C -0.49 -29.02 9.49 67.92 0.64 -28.37 16 18 H 0.09 5.00 5.20 -2.91 -0.02 4.98 16 19 C -0.05 -2.65 5.49 84.83 0.47 -2.19 16 20 N -0.92 -58.35 13.70 21.61 0.30 -58.05 16 21 Si 1.15 48.63 29.92 68.60 2.05 50.68 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 25 C -0.21 -8.87 9.99 22.39 0.22 -8.65 16 26 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 27 H 0.06 1.00 4.81 -2.39 -0.01 0.99 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.97 7.48 -2.39 -0.02 0.95 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.80 6.43 -2.39 -0.02 0.79 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 1.17 6.43 -2.39 -0.02 1.16 16 37 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 38 H 0.34 7.44 8.18 -89.69 -0.73 6.70 16 39 H 0.08 1.75 7.38 -2.39 -0.02 1.74 16 40 H 0.04 0.86 8.00 -2.39 -0.02 0.84 16 41 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 43 H 0.26 17.21 7.97 -92.71 -0.74 16.48 16 44 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -68.92 350.04 3.49 -65.43 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.28 Total: 30.10 kcal Atomic # 6 Polarization: -59.08 SS G_CDS: 3.84 Total: -55.24 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -2.47 Total: -75.37 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.21 Total: -15.60 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.05 Total: 50.68 kcal Total: -68.92 3.49 -65.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.534 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds