Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 N 1.46501 * 109.47280 * 120.00660 * 2 1 3 5 5 C 1.46500 * 119.99540 * 299.99879 * 4 2 1 6 6 C 1.50705 * 109.47370 * 270.00046 * 5 4 2 7 7 H 1.07997 * 119.99361 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00287 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99788 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46830 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46928 * 119.99945 * 10 8 6 13 13 H 1.48491 * 109.47104 * 239.99916 * 10 8 6 14 14 C 1.34773 * 120.00546 * 120.00100 * 4 2 1 15 15 O 1.21274 * 120.00284 * 180.02562 * 14 4 2 16 16 C 1.50707 * 119.99652 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.46901 * 180.02562 * 16 14 4 18 18 C 1.52995 * 109.47085 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.08993 * 109.47051 * 299.99406 * 1 2 3 26 26 H 1.09005 * 109.47005 * 59.99898 * 1 2 3 27 27 H 1.09007 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47155 * 240.00427 * 2 1 3 29 29 H 1.09006 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47430 * 300.00257 * 3 2 1 31 31 H 1.09002 * 109.46537 * 60.00604 * 3 2 1 32 32 H 1.09002 * 109.47117 * 29.99735 * 5 4 2 33 33 H 1.09000 * 109.46967 * 149.99833 * 5 4 2 34 34 H 0.96998 * 119.99589 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.47447 * 60.00244 * 16 14 4 36 36 H 1.08999 * 109.46636 * 299.99870 * 16 14 4 37 37 H 1.08995 * 109.47671 * 59.99705 * 17 16 14 38 38 H 1.09004 * 109.46984 * 299.99721 * 17 16 14 39 39 H 1.09005 * 109.47610 * 59.99944 * 18 17 16 40 40 H 1.09000 * 109.47256 * 299.99285 * 18 17 16 41 41 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -0.1903 2.5267 6 6 2.7031 0.8017 2.9830 7 1 3.5427 1.0361 2.3454 8 6 2.5816 1.4098 4.2144 9 7 1.5595 1.1238 4.9910 10 14 3.8695 2.6388 4.7803 11 1 4.9103 2.7836 3.7310 12 1 3.2253 3.9546 5.0229 13 1 4.4965 2.1556 6.0367 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3585 2.0626 16 6 3.1568 -2.3016 -0.2964 17 6 4.0360 -3.5458 -0.1561 18 6 4.4047 -4.0691 -1.5457 19 6 5.2712 -5.2944 -1.4075 20 6 4.6912 -6.5475 -1.3432 21 6 5.4861 -7.6714 -1.2170 22 6 6.8610 -7.5422 -1.1557 23 6 7.4408 -6.2887 -1.2147 24 6 6.6461 -5.1652 -1.3456 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 0.6904 0.2972 2.4843 33 1 1.6237 -1.0229 3.2290 34 1 1.4738 1.5519 5.8572 35 1 3.7016 -1.5310 -0.8417 36 1 2.2483 -2.5586 -0.8410 37 1 3.4910 -4.3163 0.3891 38 1 4.9446 -3.2891 0.3887 39 1 4.9497 -3.2988 -2.0914 40 1 3.4960 -4.3260 -2.0901 41 1 3.6169 -6.6484 -1.3915 42 1 5.0329 -8.6504 -1.1663 43 1 7.4820 -8.4204 -1.0576 44 1 8.5147 -6.1874 -1.1625 45 1 7.0994 -4.1862 -1.3966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -35.507249 kcal Electronic energy + Delta-G solvation = -22640.737400 eV Core-core repulsion = 19429.186303 eV Total energy + Delta-G solvation = -3211.551097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49824 -39.06028 -36.03710 -34.75713 -32.81271 -31.18214 -30.96984 -30.76607 -27.97002 -26.74529 -26.21947 -23.31737 -22.65703 -22.01587 -21.09545 -20.68850 -17.90697 -16.93907 -16.44098 -16.42086 -15.69761 -15.32580 -14.98880 -14.81325 -14.24192 -13.68068 -13.52548 -13.45718 -13.40563 -13.32049 -12.78649 -12.53602 -12.30286 -11.97865 -11.75970 -11.63398 -11.56701 -11.35365 -11.16110 -11.10186 -10.93133 -10.86669 -10.76055 -10.51618 -10.50362 -10.32521 -9.97320 -9.49044 -9.00496 -8.83776 -8.70800 -8.39241 -7.58655 -6.00391 -4.03387 1.27827 1.31647 3.31069 3.38825 3.41915 3.52526 3.68736 3.99530 4.47502 4.69100 4.74573 4.90354 5.02233 5.04663 5.13751 5.26723 5.33654 5.35236 5.43292 5.44439 5.57883 5.62455 5.66557 5.71798 5.76518 5.83005 5.95574 5.99284 6.03881 6.19038 6.27506 6.30336 6.38170 6.38931 6.41919 6.52265 6.60253 6.62464 6.93018 6.98396 7.16961 7.52089 7.63626 7.97152 8.29843 8.52342 8.96508 9.18610 9.60832 11.07798 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.003358 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.375105 B = 8335.551138 C = 9116.214461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.595 5.595 5 C 0.245 3.755 6 C -0.516 4.516 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.502 3.498 15 O -0.543 6.543 16 C -0.140 4.140 17 C -0.096 4.096 18 C -0.082 4.082 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -10.687 -17.184 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.126 3.874 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.289 3.711 15 O -0.421 6.421 16 C -0.181 4.181 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.302 -10.927 -16.465 20.224 hybrid contribution 0.673 0.801 0.440 1.135 sum 4.975 -10.126 -16.025 19.598 Atomic orbital electron populations 1.22160 0.95734 1.01721 1.02385 1.20981 0.93989 0.94081 0.88078 1.22142 1.01327 0.95811 1.02231 1.48347 1.49297 1.26569 1.08509 1.19217 0.95807 0.94927 0.77444 1.21486 1.08851 1.23209 1.01996 0.92376 1.24935 0.95759 0.97188 0.96391 1.69947 1.29584 1.43381 1.10639 0.86497 0.81681 0.80803 0.78776 1.19849 1.21070 1.20971 1.20383 0.79100 0.80887 0.90709 1.90665 1.53359 1.58188 1.39895 1.21718 1.00980 0.98794 0.96576 1.21289 1.00347 0.96498 0.95258 1.20690 0.98642 0.94525 0.98126 1.19956 0.94056 0.94951 0.98488 1.21082 0.99866 0.92119 1.00513 1.21133 0.93920 0.98529 1.00219 1.21115 0.95064 0.97394 1.01236 1.21141 0.99756 0.92727 1.00130 1.21098 0.93298 0.98764 1.00374 0.91349 0.92347 0.92969 0.90687 0.92793 0.93338 0.90116 0.94910 0.94185 0.92902 0.89642 0.89799 0.91184 0.91061 0.90973 0.91010 0.86088 0.86264 0.86392 0.86244 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.17 37.16 0.34 -2.02 16 2 C 0.13 2.16 3.17 -67.93 -0.22 1.94 16 3 C -0.16 -2.58 8.47 37.16 0.31 -2.27 16 4 N -0.60 -12.50 2.39 -167.47 -0.40 -12.90 16 5 C 0.25 6.37 4.59 -5.19 -0.02 6.35 16 6 C -0.52 -14.46 7.83 -34.44 -0.27 -14.73 16 7 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.50 10.44 7.67 -10.98 -0.08 10.36 16 15 O -0.54 -13.84 15.56 5.56 0.09 -13.76 16 16 C -0.14 -2.03 4.01 -27.88 -0.11 -2.14 16 17 C -0.10 -1.34 4.49 -26.74 -0.12 -1.46 16 18 C -0.08 -0.88 5.34 -27.88 -0.15 -1.03 16 19 C -0.07 -0.85 5.13 -104.62 -0.54 -1.39 16 20 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 25 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 32 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.09 7.79 -51.93 -0.40 0.69 16 36 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 37 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -33.12 366.92 -9.54 -42.65 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.55 Total: 0.53 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.91 Total: -13.04 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.34 Total: -38.86 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.12 -9.54 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.147 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds