Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 N 1.46501 * 109.47280 * 120.00660 * 2 1 3 5 5 C 1.46500 * 119.99540 * 299.99879 * 4 2 1 6 6 C 1.50705 * 109.47370 * 270.00046 * 5 4 2 7 7 H 1.07997 * 119.99361 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00287 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99788 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46830 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46928 * 119.99945 * 10 8 6 13 13 H 1.48491 * 109.47104 * 239.99916 * 10 8 6 14 14 C 1.34773 * 120.00546 * 120.00100 * 4 2 1 15 15 O 1.21274 * 120.00284 * 180.02562 * 14 4 2 16 16 C 1.50707 * 119.99652 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.46901 * 180.02562 * 16 14 4 18 18 C 1.52995 * 109.47085 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.08993 * 109.47051 * 299.99406 * 1 2 3 26 26 H 1.09005 * 109.47005 * 59.99898 * 1 2 3 27 27 H 1.09007 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47155 * 240.00427 * 2 1 3 29 29 H 1.09006 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47430 * 300.00257 * 3 2 1 31 31 H 1.09002 * 109.46537 * 60.00604 * 3 2 1 32 32 H 1.09002 * 109.47117 * 29.99735 * 5 4 2 33 33 H 1.09000 * 109.46967 * 149.99833 * 5 4 2 34 34 H 0.96998 * 119.99589 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.47447 * 60.00244 * 16 14 4 36 36 H 1.08999 * 109.46636 * 299.99870 * 16 14 4 37 37 H 1.08995 * 109.47671 * 59.99705 * 17 16 14 38 38 H 1.09004 * 109.46984 * 299.99721 * 17 16 14 39 39 H 1.09005 * 109.47610 * 59.99944 * 18 17 16 40 40 H 1.09000 * 109.47256 * 299.99285 * 18 17 16 41 41 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 44 44 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 45 45 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -0.1903 2.5267 6 6 2.7031 0.8017 2.9830 7 1 3.5427 1.0361 2.3454 8 6 2.5816 1.4098 4.2144 9 7 1.5595 1.1238 4.9910 10 14 3.8695 2.6388 4.7803 11 1 4.9103 2.7836 3.7310 12 1 3.2253 3.9546 5.0229 13 1 4.4965 2.1556 6.0367 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3585 2.0626 16 6 3.1568 -2.3016 -0.2964 17 6 4.0360 -3.5458 -0.1561 18 6 4.4047 -4.0691 -1.5457 19 6 5.2712 -5.2944 -1.4075 20 6 4.6912 -6.5475 -1.3432 21 6 5.4861 -7.6714 -1.2170 22 6 6.8610 -7.5422 -1.1557 23 6 7.4408 -6.2887 -1.2147 24 6 6.6461 -5.1652 -1.3456 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 0.6904 0.2972 2.4843 33 1 1.6237 -1.0229 3.2290 34 1 1.4738 1.5519 5.8572 35 1 3.7016 -1.5310 -0.8417 36 1 2.2483 -2.5586 -0.8410 37 1 3.4910 -4.3163 0.3891 38 1 4.9446 -3.2891 0.3887 39 1 4.9497 -3.2988 -2.0914 40 1 3.4960 -4.3260 -2.0901 41 1 3.6169 -6.6484 -1.3915 42 1 5.0329 -8.6504 -1.1663 43 1 7.4820 -8.4204 -1.0576 44 1 8.5147 -6.1874 -1.1625 45 1 7.0994 -4.1862 -1.3966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = -53.496758 kcal Electronic energy + Delta-G solvation = -22641.517484 eV Core-core repulsion = 19429.186303 eV Total energy + Delta-G solvation = -3212.331181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87141 -40.07743 -37.60366 -35.84410 -34.90073 -32.38422 -32.22754 -31.72269 -29.65977 -28.01047 -27.55962 -25.04650 -23.41902 -23.36481 -22.44297 -21.60790 -19.44208 -18.60641 -18.14801 -17.50321 -16.90611 -16.80550 -16.23183 -15.96414 -15.80979 -14.98564 -14.82631 -14.78759 -14.34755 -14.26385 -14.15023 -13.82422 -13.74111 -13.37029 -13.25904 -12.89728 -12.84572 -12.77163 -12.67567 -12.52195 -12.37082 -12.19647 -12.07788 -11.92722 -11.75223 -11.56774 -11.51089 -11.46251 -10.61942 -10.49955 -9.77912 -9.54381 -9.38114 -8.19577 -6.31584 0.49450 0.54159 1.34433 1.37035 1.48318 1.90896 2.33257 2.48128 2.92319 3.09895 3.74198 3.81590 3.97304 4.03390 4.18916 4.19512 4.28588 4.33222 4.37086 4.46317 4.57490 4.61364 4.68205 4.73024 4.81755 4.87121 4.89352 4.93173 5.05430 5.08668 5.14190 5.15187 5.21802 5.26852 5.27737 5.44157 5.46134 5.60197 5.62078 5.66070 5.66165 5.79441 5.92892 6.12408 6.18358 6.75596 6.89620 7.32676 7.56805 8.87887 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.003358 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.375105 B = 8335.551138 C = 9116.214461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.600 5.600 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.285 1.285 14 C 0.488 3.512 15 O -0.604 6.604 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.070 4.070 19 C -0.093 4.093 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.135 4.135 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.024 0.976 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -10.413 -20.273 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.211 4.211 4 N -0.331 5.331 5 C 0.142 3.858 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.211 1.211 14 C 0.278 3.722 15 O -0.486 6.486 16 C -0.164 4.164 17 C -0.127 4.127 18 C -0.108 4.108 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.153 4.153 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.896 -10.637 -19.609 22.839 hybrid contribution 0.466 0.659 1.399 1.615 sum 5.362 -9.979 -18.210 21.446 Atomic orbital electron populations 1.22127 0.94479 1.02211 1.02671 1.21439 0.95078 0.93950 0.87307 1.22088 1.00623 0.96004 1.02336 1.48423 1.49396 1.27110 1.08174 1.18612 0.95168 0.92458 0.79592 1.21704 1.08922 1.23394 1.02220 0.92814 1.25834 0.97873 0.99211 0.96560 1.70070 1.31407 1.44655 1.11098 0.85442 0.79070 0.78711 0.78063 1.19058 1.19542 1.21073 1.21635 0.77766 0.80020 0.92781 1.90632 1.55497 1.59901 1.42618 1.21736 1.02941 0.99328 0.92426 1.21185 0.98683 0.95829 0.97021 1.20604 0.99677 0.94586 0.95887 1.20148 0.94416 0.95521 0.99246 1.21348 1.00688 0.92349 1.00637 1.21461 0.94237 0.99322 0.99759 1.21456 0.95428 0.98105 1.00532 1.21449 1.00787 0.92793 0.99856 1.21341 0.93626 0.99502 1.00789 0.94646 0.88391 0.92422 0.86132 0.93802 0.89093 0.94078 0.95819 0.99430 0.92663 0.86782 0.86062 0.93334 0.93879 0.89341 0.88909 0.85039 0.84373 0.84302 0.84569 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.17 71.98 0.66 -3.59 16 2 C 0.12 3.74 3.17 44.99 0.14 3.88 16 3 C -0.15 -4.72 8.47 71.98 0.61 -4.11 16 4 N -0.60 -25.41 2.39 -802.13 -1.91 -27.32 16 5 C 0.26 14.39 4.59 85.63 0.39 14.79 16 6 C -0.52 -30.34 7.83 25.60 0.20 -30.14 16 7 H 0.05 3.09 7.63 -2.91 -0.02 3.07 16 8 C 0.00 0.19 5.46 84.65 0.46 0.66 16 9 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 10 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 C 0.49 20.44 7.67 87.66 0.67 21.11 16 15 O -0.60 -32.38 15.56 -3.01 -0.05 -32.42 16 16 C -0.12 -3.28 4.01 29.85 0.12 -3.16 16 17 C -0.09 -2.40 4.49 30.59 0.14 -2.26 16 18 C -0.07 -1.32 5.34 29.85 0.16 -1.16 16 19 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 20 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 21 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 22 C -0.14 -2.50 10.05 22.27 0.22 -2.27 16 23 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 24 C -0.13 -2.86 9.70 22.27 0.22 -2.64 16 25 H 0.03 1.18 6.66 -2.39 -0.02 1.17 16 26 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.12 2.57 5.77 -2.38 -0.01 2.55 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.59 6.92 -2.39 -0.02 1.57 16 32 H 0.02 1.33 6.43 -2.39 -0.02 1.31 16 33 H -0.01 -0.80 7.42 -2.39 -0.02 -0.82 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 35 H 0.11 2.42 7.79 -2.39 -0.02 2.41 16 36 H 0.12 2.35 7.79 -2.39 -0.02 2.33 16 37 H 0.05 1.49 8.10 -2.39 -0.02 1.48 16 38 H 0.04 1.38 8.10 -2.38 -0.02 1.36 16 39 H 0.09 1.38 8.09 -2.38 -0.02 1.36 16 40 H 0.09 1.36 8.09 -2.39 -0.02 1.35 16 41 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -78.03 366.92 5.85 -72.18 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.94 Total: 14.94 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 4.56 Total: -18.02 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.63 Total: -84.54 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.03 5.85 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.685 kcal (2) G-P(sol) polarization free energy of solvation -78.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds