Wall clock time and date at job start Tue Mar 31 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46609 * 2 1 4 4 H 1.09003 * 109.47349 * 51.12575 * 3 2 1 5 5 C 1.53001 * 109.47115 * 171.12194 * 3 2 1 6 6 C 1.52994 * 109.47465 * 291.12634 * 3 2 1 7 7 H 1.09010 * 109.46597 * 307.83217 * 6 3 2 8 8 C 1.50700 * 109.47256 * 187.83682 * 6 3 2 9 9 O 1.21293 * 119.99918 * 328.38477 * 8 6 3 10 10 N 1.34777 * 119.99905 * 148.38293 * 8 6 3 11 11 C 1.37099 * 119.99748 * 174.32496 * 10 8 6 12 12 H 1.08002 * 119.99938 * 348.05141 * 11 10 8 13 13 C 1.38946 * 120.00120 * 168.05779 * 11 10 8 14 14 N 1.31410 * 120.00050 * 4.44203 * 13 11 10 15 15 Si 1.86806 * 120.00222 * 184.44171 * 13 11 10 16 16 H 1.48497 * 109.46917 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47018 * 119.99678 * 15 13 11 18 18 H 1.48494 * 109.47210 * 239.99986 * 15 13 11 19 19 C 1.46496 * 120.00169 * 354.32574 * 10 8 6 20 20 C 1.52998 * 109.47018 * 263.30140 * 19 10 8 21 21 C 1.50700 * 109.47526 * 67.83094 * 6 3 2 22 22 C 1.38234 * 119.99882 * 231.14358 * 21 6 3 23 23 C 1.38237 * 119.99602 * 179.97438 * 22 21 6 24 24 C 1.38241 * 120.00100 * 0.07623 * 23 22 21 25 25 C 1.38230 * 119.99971 * 359.88282 * 24 23 22 26 26 C 1.38232 * 119.99637 * 51.12400 * 21 6 3 27 27 H 1.08998 * 109.47188 * 316.70100 * 1 2 3 28 28 H 1.08998 * 109.47166 * 76.70597 * 1 2 3 29 29 H 1.09005 * 109.46993 * 196.70182 * 1 2 3 30 30 H 1.09000 * 109.47084 * 240.00143 * 2 1 3 31 31 H 1.08993 * 109.47072 * 119.99918 * 2 1 3 32 32 H 1.08998 * 109.47506 * 186.17352 * 5 3 2 33 33 H 1.09007 * 109.47141 * 306.17283 * 5 3 2 34 34 H 1.08998 * 109.46974 * 66.16701 * 5 3 2 35 35 H 0.96996 * 120.00495 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47548 * 23.30313 * 19 10 8 37 37 H 1.09004 * 109.46808 * 143.30746 * 19 10 8 38 38 H 1.09004 * 109.46836 * 60.00624 * 20 19 10 39 39 H 1.08996 * 109.47212 * 179.97438 * 20 19 10 40 40 H 1.09000 * 109.47716 * 300.00060 * 20 19 10 41 41 H 1.07990 * 120.00232 * 359.70340 * 22 21 6 42 42 H 1.08002 * 119.99993 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.99569 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00003 * 180.11528 * 25 24 23 45 45 H 1.07995 * 120.00162 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5529 2.0001 0.8001 5 6 3.5536 1.4484 0.2226 6 6 1.7197 2.0967 -1.3455 7 1 2.0882 1.4646 -2.1536 8 6 2.3867 3.4461 -1.4194 9 8 2.5459 4.0999 -0.4102 10 7 2.8062 3.9263 -2.6068 11 6 3.3064 5.1999 -2.6930 12 1 3.1893 5.8832 -1.8649 13 6 3.9639 5.6115 -3.8458 14 7 4.0302 4.8109 -4.8857 15 14 4.7536 7.3029 -3.9173 16 1 4.5390 8.0043 -2.6261 17 1 6.2104 7.1589 -4.1668 18 1 4.1386 8.0902 -5.0159 19 6 2.7276 3.0875 -3.8052 20 6 4.0827 2.4209 -4.0509 21 6 0.2283 2.2655 -1.4798 22 6 -0.4193 1.8115 -2.6136 23 6 -1.7875 1.9659 -2.7365 24 6 -2.5079 2.5755 -1.7264 25 6 -1.8604 3.0287 -0.5923 26 6 -0.4922 2.8738 -0.4691 27 1 -0.3633 0.7479 0.7048 28 1 -0.3633 0.2363 -1.0001 29 1 -0.3633 -0.9844 0.2954 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9008 2.4758 0.3321 33 1 3.7902 0.8867 1.1264 34 1 4.0483 0.9868 -0.6319 35 1 4.4888 5.0983 -5.6906 36 1 1.9661 2.3208 -3.6629 37 1 2.4655 3.7050 -4.6643 38 1 4.3449 1.8034 -3.1917 39 1 4.0242 1.7965 -4.9423 40 1 4.8443 3.1876 -4.1933 41 1 0.1442 1.3403 -3.4052 42 1 -2.2935 1.6116 -3.6225 43 1 -3.5769 2.6957 -1.8223 44 1 -2.4234 3.5033 0.1977 45 1 0.0136 3.2277 0.4170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:37 Heat of formation + Delta-G solvation = -2.221146 kcal Electronic energy + Delta-G solvation = -24828.060146 eV Core-core repulsion = 21617.952443 eV Total energy + Delta-G solvation = -3210.107704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10926 -38.09945 -36.10375 -34.87251 -31.92557 -31.07186 -30.56173 -30.10043 -29.32894 -26.74875 -24.64727 -23.12120 -22.47060 -21.95348 -21.33421 -20.14875 -18.25715 -16.85641 -16.67614 -16.24935 -15.13494 -14.85771 -14.57962 -14.11654 -13.86108 -13.54554 -13.50514 -13.29045 -13.03555 -12.74513 -12.64346 -12.49146 -12.23124 -11.73041 -11.60176 -11.48170 -11.22064 -11.11137 -10.96677 -10.76752 -10.74237 -10.61504 -10.37144 -10.24957 -10.20599 -10.13069 -10.00183 -9.78466 -8.77504 -8.61323 -8.52356 -7.92085 -7.61750 -6.15718 -3.79300 1.69227 1.74687 3.15605 3.26390 3.33408 3.88730 4.10931 4.19094 4.80792 5.04310 5.17057 5.21623 5.25275 5.28035 5.35614 5.44093 5.55862 5.66308 5.82402 5.84282 5.89974 5.93138 6.09700 6.10430 6.15877 6.24985 6.27572 6.31823 6.35623 6.41783 6.47839 6.58484 6.68821 6.78563 6.79381 6.83328 6.84391 6.89521 6.92980 7.06066 7.34049 7.44132 7.62032 7.87495 8.14481 8.58173 9.22989 9.50754 10.04397 10.71055 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.006049 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.812107 B = 4627.385325 C = 5137.247564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.066 4.066 4 H 0.077 0.923 5 C -0.150 4.150 6 C -0.061 4.061 7 H 0.087 0.913 8 C 0.459 3.541 9 O -0.590 6.590 10 N -0.443 5.443 11 C -0.288 4.288 12 H 0.101 0.899 13 C 0.020 3.980 14 N -0.879 5.879 15 Si 0.927 3.073 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.283 1.283 19 C 0.122 3.878 20 C -0.143 4.143 21 C -0.042 4.042 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.104 4.104 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.012 0.988 39 H 0.032 0.968 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 -8.957 3.024 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.154 4.154 3 C -0.085 4.085 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.083 4.083 7 H 0.106 0.894 8 C 0.247 3.753 9 O -0.475 6.475 10 N -0.160 5.160 11 C -0.416 4.416 12 H 0.119 0.881 13 C -0.180 4.180 14 N -0.522 5.522 15 Si 0.755 3.245 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.002 4.002 20 C -0.201 4.201 21 C -0.042 4.042 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.122 4.122 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.129 0.871 38 H 0.031 0.969 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.533 -8.585 3.296 11.888 hybrid contribution 0.427 0.690 -0.397 0.904 sum -7.106 -7.895 2.899 11.011 Atomic orbital electron populations 1.22198 0.96037 1.00558 1.02963 1.21595 0.95936 0.96477 1.01372 1.20975 0.96650 0.94686 0.96143 0.90480 1.21898 0.95181 1.03399 1.00263 1.20390 0.91513 0.97154 0.99244 0.89450 1.19621 0.84549 0.87358 0.83816 1.90480 1.61694 1.60796 1.34523 1.43812 1.53521 1.12864 1.05850 1.19821 1.31259 0.88381 1.02109 0.88147 1.25252 0.97476 0.99711 0.95542 1.70165 1.43152 1.35019 1.03864 0.85827 0.78727 0.81683 0.78308 1.19432 1.20749 1.20901 1.21659 0.95402 0.92750 0.90342 1.22329 1.01174 0.99740 0.96897 1.19550 0.94319 0.96359 0.94008 1.21042 0.94525 1.00900 0.97318 1.21011 0.94141 1.00089 0.98708 1.21007 0.99374 1.00129 0.94550 1.21058 0.94610 1.00330 0.97971 1.21069 0.93723 0.98098 0.99265 0.92544 0.91419 0.94017 0.92311 0.92391 0.90669 0.93483 0.93396 0.92624 0.95383 0.87127 0.96885 0.94879 0.88502 0.86230 0.86547 0.86790 0.86622 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.34 37.16 0.31 -1.80 16 2 C -0.12 -1.59 5.38 -26.73 -0.14 -1.74 16 3 C -0.07 -1.10 1.64 -90.62 -0.15 -1.25 16 4 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 5 C -0.15 -2.60 8.65 37.16 0.32 -2.27 16 6 C -0.06 -1.15 1.26 -92.93 -0.12 -1.27 16 7 H 0.09 1.60 5.85 -51.92 -0.30 1.30 16 8 C 0.46 10.91 5.56 -10.99 -0.06 10.85 16 9 O -0.59 -15.72 14.66 5.55 0.08 -15.64 16 10 N -0.44 -11.18 2.64 -114.82 -0.30 -11.49 16 11 C -0.29 -7.91 9.46 -14.93 -0.14 -8.05 16 12 H 0.10 2.92 7.27 -52.49 -0.38 2.54 16 13 C 0.02 0.52 5.25 -17.47 -0.09 0.43 16 14 N -0.88 -22.18 7.13 55.50 0.40 -21.79 16 15 Si 0.93 20.73 29.56 -169.99 -5.02 15.71 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.12 2.75 5.15 -4.04 -0.02 2.73 16 20 C -0.14 -3.10 9.45 37.16 0.35 -2.75 16 21 C -0.04 -0.72 2.50 -104.63 -0.26 -0.98 16 22 C -0.12 -1.87 7.62 -39.58 -0.30 -2.17 16 23 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 25 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.10 -1.74 6.91 -39.58 -0.27 -2.01 16 27 H 0.06 0.76 6.47 -51.93 -0.34 0.43 16 28 H 0.07 0.93 4.82 -51.93 -0.25 0.68 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.07 1.55 6.32 -51.93 -0.33 1.22 16 33 H 0.05 0.69 8.11 -51.92 -0.42 0.27 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 36 H 0.03 0.56 4.34 -51.93 -0.23 0.33 16 37 H 0.11 2.73 6.03 -51.93 -0.31 2.42 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 2.37 5.70 -51.93 -0.30 2.08 16 41 H 0.12 1.74 7.05 -52.49 -0.37 1.37 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.12 2.21 6.99 -52.49 -0.37 1.84 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -28.47 339.22 -8.37 -36.84 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.86 Total: 7.95 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.77 Total: -16.69 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.09 Total: -33.27 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.64 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.47 -8.37 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.619 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds