Wall clock time and date at job start Tue Mar 31 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46609 * 2 1 4 4 H 1.09003 * 109.47349 * 51.12575 * 3 2 1 5 5 C 1.53001 * 109.47115 * 171.12194 * 3 2 1 6 6 C 1.52994 * 109.47465 * 291.12634 * 3 2 1 7 7 H 1.09010 * 109.46597 * 307.83217 * 6 3 2 8 8 C 1.50700 * 109.47256 * 187.83682 * 6 3 2 9 9 O 1.21293 * 119.99918 * 328.38477 * 8 6 3 10 10 N 1.34777 * 119.99905 * 148.38293 * 8 6 3 11 11 C 1.37099 * 119.99748 * 174.32496 * 10 8 6 12 12 H 1.08002 * 119.99938 * 348.05141 * 11 10 8 13 13 C 1.38946 * 120.00120 * 168.05779 * 11 10 8 14 14 N 1.31410 * 120.00050 * 4.44203 * 13 11 10 15 15 Si 1.86806 * 120.00222 * 184.44171 * 13 11 10 16 16 H 1.48497 * 109.46917 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47018 * 119.99678 * 15 13 11 18 18 H 1.48494 * 109.47210 * 239.99986 * 15 13 11 19 19 C 1.46496 * 120.00169 * 354.32574 * 10 8 6 20 20 C 1.52998 * 109.47018 * 263.30140 * 19 10 8 21 21 C 1.50700 * 109.47526 * 67.83094 * 6 3 2 22 22 C 1.38234 * 119.99882 * 231.14358 * 21 6 3 23 23 C 1.38237 * 119.99602 * 179.97438 * 22 21 6 24 24 C 1.38241 * 120.00100 * 0.07623 * 23 22 21 25 25 C 1.38230 * 119.99971 * 359.88282 * 24 23 22 26 26 C 1.38232 * 119.99637 * 51.12400 * 21 6 3 27 27 H 1.08998 * 109.47188 * 316.70100 * 1 2 3 28 28 H 1.08998 * 109.47166 * 76.70597 * 1 2 3 29 29 H 1.09005 * 109.46993 * 196.70182 * 1 2 3 30 30 H 1.09000 * 109.47084 * 240.00143 * 2 1 3 31 31 H 1.08993 * 109.47072 * 119.99918 * 2 1 3 32 32 H 1.08998 * 109.47506 * 186.17352 * 5 3 2 33 33 H 1.09007 * 109.47141 * 306.17283 * 5 3 2 34 34 H 1.08998 * 109.46974 * 66.16701 * 5 3 2 35 35 H 0.96996 * 120.00495 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47548 * 23.30313 * 19 10 8 37 37 H 1.09004 * 109.46808 * 143.30746 * 19 10 8 38 38 H 1.09004 * 109.46836 * 60.00624 * 20 19 10 39 39 H 1.08996 * 109.47212 * 179.97438 * 20 19 10 40 40 H 1.09000 * 109.47716 * 300.00060 * 20 19 10 41 41 H 1.07990 * 120.00232 * 359.70340 * 22 21 6 42 42 H 1.08002 * 119.99993 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.99569 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00003 * 180.11528 * 25 24 23 45 45 H 1.07995 * 120.00162 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5529 2.0001 0.8001 5 6 3.5536 1.4484 0.2226 6 6 1.7197 2.0967 -1.3455 7 1 2.0882 1.4646 -2.1536 8 6 2.3867 3.4461 -1.4194 9 8 2.5459 4.0999 -0.4102 10 7 2.8062 3.9263 -2.6068 11 6 3.3064 5.1999 -2.6930 12 1 3.1893 5.8832 -1.8649 13 6 3.9639 5.6115 -3.8458 14 7 4.0302 4.8109 -4.8857 15 14 4.7536 7.3029 -3.9173 16 1 4.5390 8.0043 -2.6261 17 1 6.2104 7.1589 -4.1668 18 1 4.1386 8.0902 -5.0159 19 6 2.7276 3.0875 -3.8052 20 6 4.0827 2.4209 -4.0509 21 6 0.2283 2.2655 -1.4798 22 6 -0.4193 1.8115 -2.6136 23 6 -1.7875 1.9659 -2.7365 24 6 -2.5079 2.5755 -1.7264 25 6 -1.8604 3.0287 -0.5923 26 6 -0.4922 2.8738 -0.4691 27 1 -0.3633 0.7479 0.7048 28 1 -0.3633 0.2363 -1.0001 29 1 -0.3633 -0.9844 0.2954 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9008 2.4758 0.3321 33 1 3.7902 0.8867 1.1264 34 1 4.0483 0.9868 -0.6319 35 1 4.4888 5.0983 -5.6906 36 1 1.9661 2.3208 -3.6629 37 1 2.4655 3.7050 -4.6643 38 1 4.3449 1.8034 -3.1917 39 1 4.0242 1.7965 -4.9423 40 1 4.8443 3.1876 -4.1933 41 1 0.1442 1.3403 -3.4052 42 1 -2.2935 1.6116 -3.6225 43 1 -3.5769 2.6957 -1.8223 44 1 -2.4234 3.5033 0.1977 45 1 0.0136 3.2277 0.4170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:36 Heat of formation + Delta-G solvation = -15.543228 kcal Electronic energy + Delta-G solvation = -24828.637835 eV Core-core repulsion = 21617.952443 eV Total energy + Delta-G solvation = -3210.685393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57249 -39.64320 -37.59736 -36.65115 -33.74601 -32.47457 -31.72142 -31.40481 -31.09034 -28.25594 -26.46750 -24.37615 -23.89747 -23.47928 -22.62543 -21.59789 -19.82811 -18.78558 -18.11513 -17.80786 -16.64110 -16.34545 -16.06363 -15.61065 -15.46427 -15.13246 -14.79782 -14.64204 -14.59228 -14.17207 -14.00360 -13.87354 -13.56158 -13.35029 -13.23871 -13.01541 -12.86903 -12.64849 -12.49593 -12.31509 -12.11989 -11.98363 -11.97418 -11.81953 -11.79245 -11.54294 -11.48373 -11.26700 -10.68750 -10.32717 -9.68409 -9.58545 -9.29211 -8.12843 -5.84490 0.51043 0.58410 1.35127 1.40559 1.52794 2.10285 2.27914 2.92705 3.10371 3.20154 3.79175 3.86647 3.94717 4.10648 4.19908 4.24513 4.34447 4.42991 4.49608 4.50856 4.60528 4.66570 4.73431 4.80520 4.86996 4.91830 4.95666 5.02302 5.06044 5.15255 5.18420 5.20587 5.23043 5.29403 5.41913 5.46114 5.48053 5.56743 5.65055 5.66783 5.69383 5.82124 6.02087 6.14641 6.20633 6.61895 7.24528 7.59150 8.13555 8.70826 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.006049 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.812107 B = 4627.385325 C = 5137.247564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.064 4.064 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.048 4.048 7 H 0.092 0.908 8 C 0.452 3.548 9 O -0.630 6.630 10 N -0.457 5.457 11 C -0.331 4.331 12 H 0.067 0.933 13 C -0.004 4.004 14 N -0.877 5.877 15 Si 0.983 3.017 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.270 1.270 19 C 0.126 3.874 20 C -0.134 4.134 21 C -0.060 4.060 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.122 4.122 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.016 0.984 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.135 0.865 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 -10.741 1.750 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.083 4.083 4 H 0.078 0.922 5 C -0.203 4.203 6 C -0.069 4.069 7 H 0.111 0.889 8 C 0.242 3.758 9 O -0.518 6.518 10 N -0.175 5.175 11 C -0.459 4.459 12 H 0.085 0.915 13 C -0.205 4.205 14 N -0.518 5.518 15 Si 0.808 3.192 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.195 1.195 19 C 0.004 3.996 20 C -0.192 4.192 21 C -0.060 4.060 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.140 4.140 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.103 -10.397 1.990 13.961 hybrid contribution 0.870 1.263 0.006 1.534 sum -8.233 -9.134 1.996 12.458 Atomic orbital electron populations 1.22128 0.95361 1.01323 1.02467 1.21530 0.96458 0.93902 1.02626 1.20979 0.96025 0.96661 0.94591 0.92181 1.21843 0.95746 1.01053 1.01700 1.20277 0.92494 0.93747 1.00422 0.88949 1.20555 0.83563 0.88897 0.82818 1.90439 1.62943 1.62563 1.35867 1.44028 1.53778 1.12603 1.07113 1.19644 1.34393 0.89690 1.02202 0.91473 1.25839 0.97070 1.02682 0.94871 1.70264 1.42118 1.35688 1.03747 0.85015 0.78257 0.78075 0.77815 1.20788 1.19767 1.19524 1.21637 0.96710 0.92647 0.88636 1.22169 0.99623 0.99136 0.98268 1.19445 0.93155 0.98222 0.95228 1.21218 0.95674 1.01031 0.96727 1.21395 0.93422 0.99060 0.99742 1.21416 1.01044 0.98454 0.93472 1.21323 0.93683 1.00116 0.99217 1.21008 0.94991 0.99261 0.98779 0.93526 0.91943 0.92043 0.91399 0.90693 0.94931 0.90853 0.93099 0.92052 0.92609 0.89203 0.96456 0.92209 0.91410 0.85321 0.83467 0.83459 0.84720 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 8.34 71.98 0.60 -3.18 16 2 C -0.11 -2.76 5.38 30.60 0.16 -2.59 16 3 C -0.06 -2.15 1.64 -10.79 -0.02 -2.17 16 4 H 0.06 2.23 6.43 -2.39 -0.02 2.21 16 5 C -0.15 -5.15 8.65 71.98 0.62 -4.53 16 6 C -0.05 -1.82 1.26 -12.29 -0.02 -1.83 16 7 H 0.09 3.32 5.85 -2.38 -0.01 3.31 16 8 C 0.45 22.49 5.56 87.66 0.49 22.98 16 9 O -0.63 -36.00 14.66 -3.07 -0.05 -36.04 16 10 N -0.46 -23.95 2.64 -635.55 -1.68 -25.62 16 11 C -0.33 -19.08 9.46 84.04 0.79 -18.29 16 12 H 0.07 4.21 7.27 -2.91 -0.02 4.19 16 13 C 0.00 -0.23 5.25 84.93 0.45 0.22 16 14 N -0.88 -44.32 7.13 21.66 0.15 -44.17 16 15 Si 0.98 43.19 29.56 68.60 2.03 45.21 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 C 0.13 5.70 5.15 86.38 0.44 6.15 16 20 C -0.13 -5.72 9.45 71.98 0.68 -5.04 16 21 C -0.06 -2.04 2.50 -19.87 -0.05 -2.09 16 22 C -0.13 -3.74 7.62 22.27 0.17 -3.57 16 23 C -0.12 -2.87 10.05 22.27 0.22 -2.65 16 24 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 25 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 26 C -0.12 -4.15 6.91 22.27 0.15 -3.99 16 27 H 0.05 1.22 6.47 -2.39 -0.02 1.20 16 28 H 0.06 1.58 4.82 -2.39 -0.01 1.57 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.03 1.41 6.32 -2.39 -0.02 1.39 16 33 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 36 H 0.06 2.17 4.34 -2.39 -0.01 2.16 16 37 H 0.09 4.45 6.03 -2.38 -0.01 4.43 16 38 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.07 3.32 5.70 -2.39 -0.01 3.31 16 41 H 0.13 3.43 7.05 -2.92 -0.02 3.41 16 42 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 45 H 0.10 3.81 6.99 -2.91 -0.02 3.79 16 Total: -1.00 -65.10 339.22 6.59 -58.52 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.97 Total: 28.66 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 5.15 Total: -26.56 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.52 Total: -69.79 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.04 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.10 6.59 -58.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.973 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds