Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46698 * 2 1 4 4 H 1.08992 * 109.47104 * 305.49290 * 3 2 1 5 5 C 1.52997 * 109.46652 * 185.49337 * 3 2 1 6 6 C 1.52999 * 109.46860 * 65.49415 * 3 2 1 7 7 H 1.08997 * 109.47667 * 299.38066 * 6 3 2 8 8 C 1.50699 * 109.46775 * 179.37700 * 6 3 2 9 9 O 1.21292 * 120.00636 * 268.30253 * 8 6 3 10 10 N 1.34774 * 119.99927 * 88.30724 * 8 6 3 11 11 C 1.37100 * 120.00220 * 186.06849 * 10 8 6 12 12 H 1.08007 * 120.00031 * 12.94491 * 11 10 8 13 13 C 1.38948 * 120.00380 * 192.94193 * 11 10 8 14 14 N 1.31419 * 119.99705 * 15.09760 * 13 11 10 15 15 Si 1.86793 * 120.00441 * 195.09693 * 13 11 10 16 16 H 1.48506 * 109.47093 * 60.00002 * 15 13 11 17 17 H 1.48500 * 109.47419 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47112 * 300.00163 * 15 13 11 19 19 C 1.46503 * 120.00277 * 6.06340 * 10 8 6 20 20 C 1.53001 * 109.46911 * 82.85789 * 19 10 8 21 21 C 1.50703 * 109.47232 * 59.38264 * 6 3 2 22 22 C 1.38233 * 120.00293 * 69.81363 * 21 6 3 23 23 C 1.38235 * 120.00015 * 179.79139 * 22 21 6 24 24 C 1.38230 * 119.99962 * 0.43818 * 23 22 21 25 25 C 1.38233 * 120.00216 * 359.81437 * 24 23 22 26 26 C 1.38237 * 119.99678 * 250.08506 * 21 6 3 27 27 H 1.08998 * 109.47355 * 54.15611 * 1 2 3 28 28 H 1.09004 * 109.47168 * 294.15070 * 1 2 3 29 29 H 1.09000 * 109.47111 * 174.15843 * 1 2 3 30 30 H 1.09000 * 109.47501 * 120.00072 * 2 1 3 31 31 H 1.09000 * 109.47161 * 240.00237 * 2 1 3 32 32 H 1.08999 * 109.47507 * 70.38382 * 5 3 2 33 33 H 1.09001 * 109.47330 * 190.38687 * 5 3 2 34 34 H 1.09004 * 109.47358 * 310.38125 * 5 3 2 35 35 H 0.96999 * 119.99601 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47385 * 202.86166 * 19 10 8 37 37 H 1.09001 * 109.47054 * 322.86654 * 19 10 8 38 38 H 1.09001 * 109.47128 * 179.97438 * 20 19 10 39 39 H 1.08997 * 109.47570 * 300.01134 * 20 19 10 40 40 H 1.09005 * 109.46797 * 60.00139 * 20 19 10 41 41 H 1.08007 * 119.99815 * 359.97438 * 22 21 6 42 42 H 1.08003 * 119.99990 * 180.26969 * 23 22 21 43 43 H 1.08003 * 120.00257 * 179.83753 * 24 23 22 44 44 H 1.08004 * 120.00678 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.00175 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5985 1.9840 -0.8366 5 6 3.5637 1.4448 -0.1381 6 6 1.6458 2.1228 1.3126 7 1 0.5598 2.1309 1.4058 8 6 2.1612 3.5388 1.3190 9 8 3.2520 3.7852 1.7887 10 7 1.4101 4.5317 0.8028 11 6 1.9268 5.7970 0.6947 12 1 2.9869 5.9601 0.8221 13 6 1.0869 6.8695 0.4211 14 7 -0.2135 6.7371 0.5574 15 14 1.8059 8.4995 -0.1405 16 1 2.5564 8.2997 -1.4062 17 1 0.7080 9.4741 -0.3640 18 1 2.7250 9.0208 0.9029 19 6 0.0414 4.2590 0.3571 20 6 -0.9046 4.3033 1.5587 21 6 2.2436 1.3654 2.4702 22 6 3.6095 1.3913 2.6816 23 6 4.1574 0.7001 3.7460 24 6 3.3404 -0.0244 4.5936 25 6 1.9752 -0.0546 4.3792 26 6 1.4267 0.6402 3.3174 27 1 -0.3634 0.6018 -0.8330 28 1 -0.3634 0.4205 0.9377 29 1 -0.3633 -1.0223 -0.1046 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8377 1.1314 -1.1454 33 1 3.9438 2.4497 0.0458 34 1 3.9953 0.7549 0.5871 35 1 -0.7998 7.4859 0.3668 36 1 -0.2604 5.0118 -0.3710 37 1 -0.0011 3.2714 -0.1024 38 1 -1.9230 4.1009 1.2271 39 1 -0.6027 3.5506 2.2869 40 1 -0.8621 5.2909 2.0183 41 1 4.2482 1.9540 2.0168 42 1 5.2240 0.7238 3.9137 43 1 3.7687 -0.5666 5.4237 44 1 1.3367 -0.6203 5.0417 45 1 0.3601 0.6167 3.1499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -9.104571 kcal Electronic energy + Delta-G solvation = -24766.238433 eV Core-core repulsion = 21555.832242 eV Total energy + Delta-G solvation = -3210.406191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09498 -37.99596 -36.02407 -35.01481 -31.79936 -31.30462 -30.68369 -29.49355 -29.28851 -27.18087 -24.61884 -23.33228 -22.16300 -21.99736 -21.55827 -19.86423 -18.56814 -16.88097 -16.13088 -16.00199 -15.26196 -15.04691 -14.69014 -14.07029 -14.02740 -13.74604 -13.33800 -13.28940 -12.88122 -12.76654 -12.65280 -12.39478 -12.00337 -11.83485 -11.72229 -11.48384 -11.31232 -11.15914 -11.06967 -10.83704 -10.78393 -10.71860 -10.37017 -10.28292 -10.22574 -10.00309 -9.90064 -9.85904 -8.88292 -8.51680 -8.24421 -8.04882 -7.67792 -6.25801 -3.79653 1.78744 1.88840 3.18499 3.25007 3.28924 3.87823 4.11964 4.27558 4.84787 5.01282 5.11603 5.25222 5.29110 5.33142 5.37454 5.42275 5.56438 5.65111 5.76353 5.85494 5.92207 6.00492 6.02995 6.05183 6.18134 6.19229 6.23593 6.31832 6.37658 6.39785 6.53181 6.54136 6.62430 6.68934 6.69771 6.77343 6.82264 6.87822 6.98886 7.21600 7.36326 7.47276 7.52717 7.75784 8.13066 8.55734 9.21622 9.48410 10.03327 10.71012 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.005660 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.264951 B = 4945.414926 C = 5309.516115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.072 4.072 4 H 0.074 0.926 5 C -0.159 4.159 6 C -0.063 4.063 7 H 0.090 0.910 8 C 0.455 3.545 9 O -0.585 6.585 10 N -0.441 5.441 11 C -0.297 4.297 12 H 0.100 0.900 13 C 0.025 3.975 14 N -0.877 5.877 15 Si 0.925 3.075 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.119 3.881 20 C -0.146 4.146 21 C -0.053 4.053 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.118 4.118 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.266 0.734 36 H 0.109 0.891 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.020 0.980 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -12.384 0.191 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.215 4.215 6 C -0.084 4.084 7 H 0.108 0.892 8 C 0.243 3.757 9 O -0.470 6.470 10 N -0.158 5.158 11 C -0.424 4.424 12 H 0.118 0.882 13 C -0.177 4.177 14 N -0.518 5.518 15 Si 0.752 3.248 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.004 4.004 20 C -0.204 4.204 21 C -0.053 4.053 22 C -0.098 4.098 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.108 0.892 41 H 0.163 0.837 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.184 -12.091 0.374 12.098 hybrid contribution -0.050 0.871 -0.126 0.882 sum 0.135 -11.220 0.248 11.223 Atomic orbital electron populations 1.21826 0.96112 1.00995 1.02099 1.21598 0.95743 0.96350 1.01791 1.21010 0.96732 0.95376 0.96015 0.90778 1.22169 0.95296 1.03544 1.00533 1.20327 1.00846 0.93762 0.93472 0.89178 1.19685 0.87139 0.86050 0.82819 1.90460 1.23008 1.83593 1.49968 1.43762 1.11898 1.07836 1.52348 1.19707 0.94635 0.82566 1.45532 0.88199 1.25228 0.95270 0.99416 0.97771 1.70042 1.02524 1.31911 1.47361 0.86007 0.78294 0.81079 0.79374 1.20089 1.21019 1.20017 1.21524 0.82273 0.98400 0.98243 1.22129 0.97009 1.03020 0.98223 1.19476 0.93766 0.96421 0.95683 1.21624 0.95457 0.95587 0.97134 1.21161 0.99440 0.98617 0.96110 1.21011 0.93925 1.00379 0.99529 1.20932 0.95096 1.00958 0.98250 1.20998 0.99183 0.98025 0.95388 0.92675 0.92535 0.93237 0.91670 0.92338 0.93580 0.90775 0.92138 0.92387 0.87321 0.95262 0.94462 0.96072 0.89191 0.83718 0.86800 0.87057 0.86882 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.53 37.16 0.35 -1.51 16 2 C -0.12 -1.56 5.22 -26.73 -0.14 -1.70 16 3 C -0.07 -1.17 2.09 -90.62 -0.19 -1.36 16 4 H 0.07 1.24 7.46 -51.93 -0.39 0.86 16 5 C -0.16 -2.58 7.55 37.16 0.28 -2.30 16 6 C -0.06 -1.16 1.27 -92.92 -0.12 -1.28 16 7 H 0.09 1.63 3.74 -51.93 -0.19 1.44 16 8 C 0.46 10.72 5.72 -10.99 -0.06 10.66 16 9 O -0.58 -15.36 12.41 5.55 0.07 -15.29 16 10 N -0.44 -10.96 2.64 -114.81 -0.30 -11.26 16 11 C -0.30 -8.05 9.43 -14.93 -0.14 -8.19 16 12 H 0.10 2.86 7.33 -52.48 -0.38 2.47 16 13 C 0.02 0.63 5.10 -17.47 -0.09 0.54 16 14 N -0.88 -22.22 8.23 55.50 0.46 -21.77 16 15 Si 0.93 20.46 29.58 -169.99 -5.03 15.44 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.12 2.63 4.92 -4.04 -0.02 2.61 16 20 C -0.15 -3.07 9.44 37.16 0.35 -2.72 16 21 C -0.05 -0.95 3.44 -104.62 -0.36 -1.31 16 22 C -0.08 -1.46 6.28 -39.58 -0.25 -1.71 16 23 C -0.14 -2.13 10.05 -39.59 -0.40 -2.53 16 24 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.12 -1.87 9.32 -39.58 -0.37 -2.23 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.71 6.64 -51.93 -0.34 0.37 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.90 6.73 -51.93 -0.35 0.55 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.44 5.74 -51.93 -0.30 1.14 16 34 H 0.06 0.94 5.79 -51.93 -0.30 0.64 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.11 2.60 5.76 -51.93 -0.30 2.30 16 37 H 0.03 0.57 5.94 -51.93 -0.31 0.26 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.42 7.08 -51.93 -0.37 0.05 16 40 H 0.09 2.18 6.38 -51.93 -0.33 1.85 16 41 H 0.15 2.85 4.47 -52.48 -0.23 2.61 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.11 1.62 7.73 -52.49 -0.41 1.22 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -28.35 337.61 -8.39 -36.74 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.72 Total: 8.68 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.94 Total: -17.62 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.15 Total: -33.03 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.29 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.35 -8.39 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds