Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46698 * 2 1 4 4 H 1.08992 * 109.47104 * 305.49290 * 3 2 1 5 5 C 1.52997 * 109.46652 * 185.49337 * 3 2 1 6 6 C 1.52999 * 109.46860 * 65.49415 * 3 2 1 7 7 H 1.08997 * 109.47667 * 299.38066 * 6 3 2 8 8 C 1.50699 * 109.46775 * 179.37700 * 6 3 2 9 9 O 1.21292 * 120.00636 * 268.30253 * 8 6 3 10 10 N 1.34774 * 119.99927 * 88.30724 * 8 6 3 11 11 C 1.37100 * 120.00220 * 186.06849 * 10 8 6 12 12 H 1.08007 * 120.00031 * 12.94491 * 11 10 8 13 13 C 1.38948 * 120.00380 * 192.94193 * 11 10 8 14 14 N 1.31419 * 119.99705 * 15.09760 * 13 11 10 15 15 Si 1.86793 * 120.00441 * 195.09693 * 13 11 10 16 16 H 1.48506 * 109.47093 * 60.00002 * 15 13 11 17 17 H 1.48500 * 109.47419 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47112 * 300.00163 * 15 13 11 19 19 C 1.46503 * 120.00277 * 6.06340 * 10 8 6 20 20 C 1.53001 * 109.46911 * 82.85789 * 19 10 8 21 21 C 1.50703 * 109.47232 * 59.38264 * 6 3 2 22 22 C 1.38233 * 120.00293 * 69.81363 * 21 6 3 23 23 C 1.38235 * 120.00015 * 179.79139 * 22 21 6 24 24 C 1.38230 * 119.99962 * 0.43818 * 23 22 21 25 25 C 1.38233 * 120.00216 * 359.81437 * 24 23 22 26 26 C 1.38237 * 119.99678 * 250.08506 * 21 6 3 27 27 H 1.08998 * 109.47355 * 54.15611 * 1 2 3 28 28 H 1.09004 * 109.47168 * 294.15070 * 1 2 3 29 29 H 1.09000 * 109.47111 * 174.15843 * 1 2 3 30 30 H 1.09000 * 109.47501 * 120.00072 * 2 1 3 31 31 H 1.09000 * 109.47161 * 240.00237 * 2 1 3 32 32 H 1.08999 * 109.47507 * 70.38382 * 5 3 2 33 33 H 1.09001 * 109.47330 * 190.38687 * 5 3 2 34 34 H 1.09004 * 109.47358 * 310.38125 * 5 3 2 35 35 H 0.96999 * 119.99601 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47385 * 202.86166 * 19 10 8 37 37 H 1.09001 * 109.47054 * 322.86654 * 19 10 8 38 38 H 1.09001 * 109.47128 * 179.97438 * 20 19 10 39 39 H 1.08997 * 109.47570 * 300.01134 * 20 19 10 40 40 H 1.09005 * 109.46797 * 60.00139 * 20 19 10 41 41 H 1.08007 * 119.99815 * 359.97438 * 22 21 6 42 42 H 1.08003 * 119.99990 * 180.26969 * 23 22 21 43 43 H 1.08003 * 120.00257 * 179.83753 * 24 23 22 44 44 H 1.08004 * 120.00678 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.00175 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5985 1.9840 -0.8366 5 6 3.5637 1.4448 -0.1381 6 6 1.6458 2.1228 1.3126 7 1 0.5598 2.1309 1.4058 8 6 2.1612 3.5388 1.3190 9 8 3.2520 3.7852 1.7887 10 7 1.4101 4.5317 0.8028 11 6 1.9268 5.7970 0.6947 12 1 2.9869 5.9601 0.8221 13 6 1.0869 6.8695 0.4211 14 7 -0.2135 6.7371 0.5574 15 14 1.8059 8.4995 -0.1405 16 1 2.5564 8.2997 -1.4062 17 1 0.7080 9.4741 -0.3640 18 1 2.7250 9.0208 0.9029 19 6 0.0414 4.2590 0.3571 20 6 -0.9046 4.3033 1.5587 21 6 2.2436 1.3654 2.4702 22 6 3.6095 1.3913 2.6816 23 6 4.1574 0.7001 3.7460 24 6 3.3404 -0.0244 4.5936 25 6 1.9752 -0.0546 4.3792 26 6 1.4267 0.6402 3.3174 27 1 -0.3634 0.6018 -0.8330 28 1 -0.3634 0.4205 0.9377 29 1 -0.3633 -1.0223 -0.1046 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8377 1.1314 -1.1454 33 1 3.9438 2.4497 0.0458 34 1 3.9953 0.7549 0.5871 35 1 -0.7998 7.4859 0.3668 36 1 -0.2604 5.0118 -0.3710 37 1 -0.0011 3.2714 -0.1024 38 1 -1.9230 4.1009 1.2271 39 1 -0.6027 3.5506 2.2869 40 1 -0.8621 5.2909 2.0183 41 1 4.2482 1.9540 2.0168 42 1 5.2240 0.7238 3.9137 43 1 3.7687 -0.5666 5.4237 44 1 1.3367 -0.6203 5.0417 45 1 0.3601 0.6167 3.1499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -22.279091 kcal Electronic energy + Delta-G solvation = -24766.809723 eV Core-core repulsion = 21555.832242 eV Total energy + Delta-G solvation = -3210.977481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58769 -39.51782 -37.39058 -36.85373 -33.70699 -32.55543 -31.90580 -31.21172 -30.55750 -28.68723 -26.45475 -24.52221 -23.88648 -23.21735 -22.83369 -21.36092 -20.06680 -18.79114 -17.89435 -17.25365 -16.67716 -16.53918 -16.23093 -15.67728 -15.56755 -15.19465 -14.67681 -14.47573 -14.44702 -14.28918 -14.07302 -13.71909 -13.48807 -13.28435 -13.17003 -12.99700 -12.87063 -12.65315 -12.58698 -12.52803 -12.13023 -12.04729 -11.97632 -11.88435 -11.68248 -11.49899 -11.34744 -11.19775 -10.80114 -10.07148 -9.62040 -9.58700 -9.42973 -8.21926 -5.83576 0.56622 0.66826 1.38747 1.41618 1.50875 2.09852 2.29426 2.95779 3.12337 3.22730 3.75717 3.91741 3.98768 4.16705 4.20017 4.28546 4.34567 4.43313 4.48905 4.50730 4.62371 4.68424 4.77808 4.85269 4.87343 4.89431 4.93796 4.95272 5.01837 5.12402 5.21895 5.23165 5.24656 5.32652 5.41419 5.43607 5.47154 5.56206 5.57589 5.68790 5.76287 5.91411 5.94080 6.14743 6.28233 6.61429 7.25215 7.58877 8.14943 8.72023 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.005660 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.264951 B = 4945.414926 C = 5309.516115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.071 4.071 4 H 0.065 0.935 5 C -0.151 4.151 6 C -0.048 4.048 7 H 0.096 0.904 8 C 0.447 3.553 9 O -0.622 6.622 10 N -0.457 5.457 11 C -0.337 4.337 12 H 0.069 0.931 13 C -0.003 4.003 14 N -0.880 5.880 15 Si 0.983 3.017 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.282 1.282 19 C 0.123 3.877 20 C -0.135 4.135 21 C -0.073 4.073 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.270 0.730 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -14.508 0.637 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.090 4.090 4 H 0.083 0.917 5 C -0.208 4.208 6 C -0.069 4.069 7 H 0.114 0.886 8 C 0.237 3.763 9 O -0.509 6.509 10 N -0.175 5.175 11 C -0.465 4.465 12 H 0.087 0.913 13 C -0.204 4.204 14 N -0.520 5.520 15 Si 0.808 3.192 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.208 1.208 19 C 0.000 4.000 20 C -0.193 4.193 21 C -0.074 4.074 22 C -0.123 4.123 23 C -0.163 4.163 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.327 -14.226 0.812 14.311 hybrid contribution 0.455 1.507 -0.203 1.587 sum -0.872 -12.719 0.609 12.763 Atomic orbital electron populations 1.21828 0.94903 1.02381 1.01854 1.21512 0.96713 0.93773 1.02473 1.21037 0.96346 0.97274 0.94314 0.91685 1.22074 0.95729 1.01265 1.01774 1.20215 1.00767 0.90496 0.95450 0.88573 1.20635 0.86464 0.87850 0.81387 1.90430 1.24598 1.84684 1.51201 1.43990 1.13046 1.07475 1.52954 1.19578 0.93768 0.84582 1.48547 0.91292 1.25856 0.95713 1.01743 0.97095 1.70139 1.02850 1.32710 1.46256 0.85158 0.77836 0.77682 0.78567 1.19800 1.19403 1.20818 1.21529 0.81130 0.99099 0.98268 1.21975 0.98406 1.01181 0.97703 1.19490 0.93929 0.97660 0.96314 1.21503 0.95657 0.96892 0.98227 1.21394 1.00642 0.98523 0.95700 1.21405 0.93967 0.99376 0.99599 1.21355 0.95588 1.00065 0.97749 1.21228 0.99841 0.97741 0.95323 0.92674 0.93000 0.91087 0.91868 0.90695 0.91638 0.94790 0.91605 0.91953 0.89315 0.92518 0.91579 0.95467 0.92537 0.86513 0.85414 0.83745 0.83477 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.53 71.98 0.69 -2.58 16 2 C -0.11 -2.63 5.22 30.60 0.16 -2.47 16 3 C -0.07 -2.27 2.09 -10.79 -0.02 -2.29 16 4 H 0.06 2.18 7.46 -2.39 -0.02 2.16 16 5 C -0.15 -5.09 7.55 71.98 0.54 -4.55 16 6 C -0.05 -1.79 1.27 -12.29 -0.02 -1.81 16 7 H 0.10 3.40 3.74 -2.39 -0.01 3.39 16 8 C 0.45 22.00 5.72 87.66 0.50 22.50 16 9 O -0.62 -34.85 12.41 -3.07 -0.04 -34.89 16 10 N -0.46 -23.60 2.64 -635.53 -1.68 -25.28 16 11 C -0.34 -19.21 9.43 84.04 0.79 -18.42 16 12 H 0.07 4.25 7.33 -2.91 -0.02 4.23 16 13 C 0.00 -0.15 5.10 84.92 0.43 0.28 16 14 N -0.88 -44.98 8.23 21.66 0.18 -44.80 16 15 Si 0.98 42.77 29.58 68.60 2.03 44.80 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 C 0.12 5.43 4.92 86.38 0.42 5.86 16 20 C -0.13 -5.58 9.44 71.98 0.68 -4.91 16 21 C -0.07 -2.60 3.44 -19.86 -0.07 -2.67 16 22 C -0.10 -3.88 6.28 22.27 0.14 -3.74 16 23 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 24 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 25 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 26 C -0.12 -3.63 9.32 22.27 0.21 -3.42 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.16 6.64 -2.39 -0.02 1.14 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.60 6.73 -2.39 -0.02 1.59 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.03 1.40 5.74 -2.39 -0.01 1.39 16 34 H 0.07 2.11 5.79 -2.39 -0.01 2.10 16 35 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.09 4.29 5.76 -2.39 -0.01 4.28 16 37 H 0.06 2.16 5.94 -2.39 -0.01 2.15 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.03 1.06 7.08 -2.39 -0.02 1.04 16 40 H 0.06 2.74 6.38 -2.38 -0.02 2.73 16 41 H 0.12 4.93 4.47 -2.91 -0.01 4.91 16 42 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.13 3.33 7.73 -2.91 -0.02 3.31 16 Total: -1.00 -64.83 337.61 6.60 -58.23 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.98 Total: 30.38 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.13 Total: -28.44 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.50 Total: -70.08 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.04 Total: -34.89 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.83 6.60 -58.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.951 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds