Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 H 1.09003 * 109.47427 * 36.87802 * 3 2 1 5 5 C 1.52995 * 109.47196 * 156.88006 * 3 2 1 6 6 C 1.52998 * 109.46848 * 276.87897 * 3 2 1 7 7 H 1.09003 * 109.47648 * 40.56180 * 6 3 2 8 8 C 1.50702 * 109.46950 * 160.55861 * 6 3 2 9 9 O 1.21294 * 119.99804 * 93.73265 * 8 6 3 10 10 N 1.34773 * 120.00152 * 273.72757 * 8 6 3 11 11 C 1.37100 * 120.00012 * 172.78189 * 10 8 6 12 12 H 1.07996 * 120.00568 * 24.43580 * 11 10 8 13 13 C 1.38959 * 119.99482 * 204.16276 * 11 10 8 14 14 N 1.31411 * 119.99430 * 176.44657 * 13 11 10 15 15 Si 1.86795 * 120.00085 * 356.44525 * 13 11 10 16 16 H 1.48496 * 109.47222 * 64.65444 * 15 13 11 17 17 H 1.48502 * 109.46921 * 184.64809 * 15 13 11 18 18 H 1.48492 * 109.47408 * 304.64849 * 15 13 11 19 19 C 1.46506 * 119.99854 * 352.78005 * 10 8 6 20 20 C 1.53002 * 109.46980 * 255.15512 * 19 10 8 21 21 C 1.50698 * 109.47548 * 280.55826 * 6 3 2 22 22 C 1.38241 * 119.99769 * 301.98540 * 21 6 3 23 23 C 1.38238 * 119.99738 * 179.80791 * 22 21 6 24 24 C 1.38231 * 120.00148 * 0.39142 * 23 22 21 25 25 C 1.38240 * 119.99847 * 359.86062 * 24 23 22 26 26 C 1.38227 * 120.00263 * 359.95013 * 25 24 23 27 27 H 1.09001 * 109.46963 * 185.73732 * 1 2 3 28 28 H 1.08998 * 109.46852 * 305.73766 * 1 2 3 29 29 H 1.09002 * 109.46843 * 65.73621 * 1 2 3 30 30 H 1.09005 * 109.46873 * 239.99831 * 2 1 3 31 31 H 1.09000 * 109.46996 * 119.99584 * 2 1 3 32 32 H 1.09000 * 109.47244 * 177.18297 * 5 3 2 33 33 H 1.09001 * 109.47199 * 297.18665 * 5 3 2 34 34 H 1.09001 * 109.47320 * 57.18477 * 5 3 2 35 35 H 0.97005 * 119.99928 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.46855 * 15.15378 * 19 10 8 37 37 H 1.09002 * 109.47215 * 135.15912 * 19 10 8 38 38 H 1.09000 * 109.47122 * 189.64079 * 20 19 10 39 39 H 1.09000 * 109.47496 * 309.64784 * 20 19 10 40 40 H 1.09005 * 109.46880 * 69.64479 * 20 19 10 41 41 H 1.07998 * 119.99915 * 359.97438 * 22 21 6 42 42 H 1.07997 * 119.99737 * 180.22523 * 23 22 21 43 43 H 1.07998 * 120.00019 * 179.83464 * 24 23 22 44 44 H 1.07998 * 119.99781 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00333 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3861 2.0591 0.6167 5 6 3.4608 1.4811 0.5664 6 6 2.0471 1.9808 -1.4321 7 1 1.1486 1.6463 -1.9506 8 6 2.0783 3.4872 -1.4023 9 8 3.1387 4.0732 -1.4616 10 7 0.9280 4.1834 -1.3098 11 6 0.9615 5.5426 -1.1338 12 1 1.8252 6.1073 -1.4524 13 6 -0.1182 6.1944 -0.5504 14 7 -0.0581 7.4864 -0.3178 15 14 -1.6550 5.2342 -0.0971 16 1 -1.3276 4.2481 0.9639 17 1 -2.6946 6.1703 0.4010 18 1 -2.1646 4.5208 -1.2957 19 6 -0.3584 3.4876 -1.3975 20 6 -0.9857 3.7464 -2.7688 21 6 3.2652 1.4675 -2.1558 22 6 4.5275 1.7315 -1.6578 23 6 5.6447 1.2572 -2.3195 24 6 5.5000 0.5259 -3.4836 25 6 4.2379 0.2663 -3.9844 26 6 3.1206 0.7372 -3.3207 27 1 -0.3633 -1.0225 0.1027 28 1 -0.3633 0.6002 0.8341 29 1 -0.3633 0.4223 -0.9369 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8428 2.5010 0.5201 33 1 3.4479 1.1446 1.6031 34 1 4.1039 0.8253 -0.0205 35 1 -0.8117 7.9414 0.0898 36 1 -0.2020 2.4170 -1.2657 37 1 -1.0248 3.8563 -0.6177 38 1 -2.0108 3.3761 -2.7751 39 1 -0.9848 4.8172 -2.9726 40 1 -0.4082 3.2302 -3.5358 41 1 4.6406 2.3059 -0.7503 42 1 6.6306 1.4603 -1.9285 43 1 6.3729 0.1576 -4.0020 44 1 4.1248 -0.3047 -4.8941 45 1 2.1346 0.5348 -3.7121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = 49.350739 kcal Electronic energy + Delta-G solvation = -24787.403254 eV Core-core repulsion = 21579.531875 eV Total energy + Delta-G solvation = -3207.871379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38108 -38.33558 -36.24734 -35.44253 -32.22004 -31.81792 -31.04032 -30.07674 -29.09974 -27.82477 -24.83951 -23.49168 -23.07343 -21.95115 -21.60840 -20.01958 -18.73836 -17.21581 -16.82308 -16.27570 -15.98055 -15.29793 -15.11056 -14.35182 -14.04577 -13.81657 -13.54308 -13.48430 -13.35322 -13.06206 -12.81172 -12.52928 -12.21291 -12.10113 -12.08987 -11.76240 -11.66921 -11.53119 -11.40852 -11.13634 -11.01583 -10.72076 -10.47346 -10.43454 -10.35043 -9.99060 -9.86578 -9.45771 -8.85298 -8.64733 -8.36311 -8.17241 -7.84631 -6.30388 -3.89178 1.65973 1.75991 3.02369 3.07621 3.26836 3.65197 4.04729 4.13207 4.40220 4.85747 4.94329 5.02533 5.09046 5.18613 5.21042 5.25371 5.30358 5.39854 5.46032 5.54117 5.60203 5.66283 5.73249 5.79126 5.82499 5.92113 5.93630 6.00940 6.07261 6.12009 6.18114 6.22947 6.25307 6.29474 6.34628 6.38615 6.55815 6.58834 6.74907 6.76817 6.84947 7.02549 7.33034 7.56513 8.22877 8.52055 8.95985 9.35807 9.75457 10.81904 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.006201 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.586983 B = 4514.389522 C = 4970.203649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.162 4.162 6 C -0.066 4.066 7 H 0.088 0.912 8 C 0.472 3.528 9 O -0.558 6.558 10 N -0.465 5.465 11 C -0.308 4.308 12 H 0.115 0.885 13 C 0.047 3.953 14 N -0.879 5.879 15 Si 0.897 3.103 16 H -0.286 1.286 17 H -0.303 1.303 18 H -0.248 1.248 19 C 0.073 3.927 20 C -0.159 4.159 21 C -0.059 4.059 22 C -0.085 4.085 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.273 0.727 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.147 0.853 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -17.069 -2.097 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.218 4.218 6 C -0.087 4.087 7 H 0.106 0.894 8 C 0.260 3.740 9 O -0.439 6.439 10 N -0.186 5.186 11 C -0.435 4.435 12 H 0.132 0.868 13 C -0.157 4.157 14 N -0.517 5.517 15 Si 0.732 3.268 16 H -0.215 1.215 17 H -0.232 1.232 18 H -0.175 1.175 19 C -0.049 4.049 20 C -0.217 4.217 21 C -0.060 4.060 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.165 0.835 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.146 -16.550 -2.074 16.817 hybrid contribution -1.082 -0.318 0.229 1.151 sum 1.064 -16.869 -1.845 17.003 Atomic orbital electron populations 1.21903 0.96088 1.01370 1.02056 1.21626 0.95627 0.96128 1.02170 1.21086 0.98097 0.96188 0.94262 0.90412 1.22664 0.96637 1.02629 0.99885 1.20401 0.96780 0.94851 0.96711 0.89426 1.19724 0.84150 0.87629 0.82482 1.90554 1.29554 1.70663 1.53133 1.43796 1.02801 1.07467 1.64566 1.19256 1.06284 0.79945 1.38006 0.86756 1.25235 0.98772 0.95717 0.95985 1.69624 1.31995 1.08247 1.41870 0.86888 0.83004 0.77340 0.79523 1.21500 1.23247 1.17515 1.22251 0.87878 0.97511 0.97296 1.22127 0.99192 1.03867 0.96488 1.19419 0.94203 0.97290 0.95071 1.21848 0.91520 0.96638 1.00256 1.21136 0.98552 0.99582 0.96157 1.21041 0.96949 0.99710 0.96685 1.20937 0.92706 1.01620 0.99960 1.20985 0.98464 0.98818 0.95197 0.92823 0.92556 0.92635 0.91619 0.91836 0.90880 0.93276 0.90937 0.91622 0.90294 0.93519 0.92431 0.90794 0.92719 0.83544 0.86578 0.86889 0.86759 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.50 37.16 0.35 -1.43 16 2 C -0.12 -1.43 5.43 -26.73 -0.15 -1.58 16 3 C -0.08 -1.18 1.96 -90.62 -0.18 -1.36 16 4 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 5 C -0.16 -2.38 7.15 37.16 0.27 -2.12 16 6 C -0.07 -1.13 1.35 -92.92 -0.13 -1.26 16 7 H 0.09 1.37 5.10 -51.93 -0.26 1.11 16 8 C 0.47 10.76 6.29 -10.99 -0.07 10.69 16 9 O -0.56 -14.66 14.09 5.54 0.08 -14.58 16 10 N -0.46 -11.12 2.62 -114.81 -0.30 -11.42 16 11 C -0.31 -8.71 9.49 -14.93 -0.14 -8.85 16 12 H 0.11 3.69 7.59 -52.49 -0.40 3.29 16 13 C 0.05 1.29 5.50 -17.46 -0.10 1.19 16 14 N -0.88 -25.90 13.96 55.50 0.77 -25.13 16 15 Si 0.90 20.46 23.71 -169.99 -4.03 16.43 16 16 H -0.29 -6.45 7.04 56.52 0.40 -6.06 16 17 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.25 -4.94 3.80 56.52 0.21 -4.73 16 19 C 0.07 1.46 5.02 -4.04 -0.02 1.44 16 20 C -0.16 -2.86 8.33 37.16 0.31 -2.55 16 21 C -0.06 -0.98 3.96 -104.62 -0.41 -1.40 16 22 C -0.09 -1.41 5.51 -39.58 -0.22 -1.63 16 23 C -0.14 -1.98 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -1.67 10.05 -39.58 -0.40 -2.06 16 25 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 26 C -0.12 -1.71 9.67 -39.59 -0.38 -2.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 29 H 0.05 0.63 6.24 -51.93 -0.32 0.30 16 30 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 31 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 32 H 0.07 1.26 5.92 -51.93 -0.31 0.95 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.00 5.20 -51.93 -0.27 0.73 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 1.32 3.90 -51.93 -0.20 1.11 16 37 H 0.05 1.00 1.12 -51.93 -0.06 0.94 16 38 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 39 H 0.07 1.51 7.27 -51.93 -0.38 1.13 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.15 2.57 4.00 -52.49 -0.21 2.36 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.11 1.47 7.95 -52.49 -0.42 1.05 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -31.62 331.59 -7.24 -38.86 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.70 Total: 8.39 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.06 Total: -17.56 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.47 Total: -36.55 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.08 Total: -14.58 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.03 Total: 16.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.62 -7.24 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.213 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds