Wall clock time and date at job start Tue Mar 31 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 H 1.09003 * 109.47427 * 36.87802 * 3 2 1 5 5 C 1.52995 * 109.47196 * 156.88006 * 3 2 1 6 6 C 1.52998 * 109.46848 * 276.87897 * 3 2 1 7 7 H 1.09003 * 109.47648 * 40.56180 * 6 3 2 8 8 C 1.50702 * 109.46950 * 160.55861 * 6 3 2 9 9 O 1.21294 * 119.99804 * 93.73265 * 8 6 3 10 10 N 1.34773 * 120.00152 * 273.72757 * 8 6 3 11 11 C 1.37100 * 120.00012 * 172.78189 * 10 8 6 12 12 H 1.07996 * 120.00568 * 24.43580 * 11 10 8 13 13 C 1.38959 * 119.99482 * 204.16276 * 11 10 8 14 14 N 1.31411 * 119.99430 * 176.44657 * 13 11 10 15 15 Si 1.86795 * 120.00085 * 356.44525 * 13 11 10 16 16 H 1.48496 * 109.47222 * 64.65444 * 15 13 11 17 17 H 1.48502 * 109.46921 * 184.64809 * 15 13 11 18 18 H 1.48492 * 109.47408 * 304.64849 * 15 13 11 19 19 C 1.46506 * 119.99854 * 352.78005 * 10 8 6 20 20 C 1.53002 * 109.46980 * 255.15512 * 19 10 8 21 21 C 1.50698 * 109.47548 * 280.55826 * 6 3 2 22 22 C 1.38241 * 119.99769 * 301.98540 * 21 6 3 23 23 C 1.38238 * 119.99738 * 179.80791 * 22 21 6 24 24 C 1.38231 * 120.00148 * 0.39142 * 23 22 21 25 25 C 1.38240 * 119.99847 * 359.86062 * 24 23 22 26 26 C 1.38227 * 120.00263 * 359.95013 * 25 24 23 27 27 H 1.09001 * 109.46963 * 185.73732 * 1 2 3 28 28 H 1.08998 * 109.46852 * 305.73766 * 1 2 3 29 29 H 1.09002 * 109.46843 * 65.73621 * 1 2 3 30 30 H 1.09005 * 109.46873 * 239.99831 * 2 1 3 31 31 H 1.09000 * 109.46996 * 119.99584 * 2 1 3 32 32 H 1.09000 * 109.47244 * 177.18297 * 5 3 2 33 33 H 1.09001 * 109.47199 * 297.18665 * 5 3 2 34 34 H 1.09001 * 109.47320 * 57.18477 * 5 3 2 35 35 H 0.97005 * 119.99928 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.46855 * 15.15378 * 19 10 8 37 37 H 1.09002 * 109.47215 * 135.15912 * 19 10 8 38 38 H 1.09000 * 109.47122 * 189.64079 * 20 19 10 39 39 H 1.09000 * 109.47496 * 309.64784 * 20 19 10 40 40 H 1.09005 * 109.46880 * 69.64479 * 20 19 10 41 41 H 1.07998 * 119.99915 * 359.97438 * 22 21 6 42 42 H 1.07997 * 119.99737 * 180.22523 * 23 22 21 43 43 H 1.07998 * 120.00019 * 179.83464 * 24 23 22 44 44 H 1.07998 * 119.99781 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00333 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3861 2.0591 0.6167 5 6 3.4608 1.4811 0.5664 6 6 2.0471 1.9808 -1.4321 7 1 1.1486 1.6463 -1.9506 8 6 2.0783 3.4872 -1.4023 9 8 3.1387 4.0732 -1.4616 10 7 0.9280 4.1834 -1.3098 11 6 0.9615 5.5426 -1.1338 12 1 1.8252 6.1073 -1.4524 13 6 -0.1182 6.1944 -0.5504 14 7 -0.0581 7.4864 -0.3178 15 14 -1.6550 5.2342 -0.0971 16 1 -1.3276 4.2481 0.9639 17 1 -2.6946 6.1703 0.4010 18 1 -2.1646 4.5208 -1.2957 19 6 -0.3584 3.4876 -1.3975 20 6 -0.9857 3.7464 -2.7688 21 6 3.2652 1.4675 -2.1558 22 6 4.5275 1.7315 -1.6578 23 6 5.6447 1.2572 -2.3195 24 6 5.5000 0.5259 -3.4836 25 6 4.2379 0.2663 -3.9844 26 6 3.1206 0.7372 -3.3207 27 1 -0.3633 -1.0225 0.1027 28 1 -0.3633 0.6002 0.8341 29 1 -0.3633 0.4223 -0.9369 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8428 2.5010 0.5201 33 1 3.4479 1.1446 1.6031 34 1 4.1039 0.8253 -0.0205 35 1 -0.8117 7.9414 0.0898 36 1 -0.2020 2.4170 -1.2657 37 1 -1.0248 3.8563 -0.6177 38 1 -2.0108 3.3761 -2.7751 39 1 -0.9848 4.8172 -2.9726 40 1 -0.4082 3.2302 -3.5358 41 1 4.6406 2.3059 -0.7503 42 1 6.6306 1.4603 -1.9285 43 1 6.3729 0.1576 -4.0020 44 1 4.1248 -0.3047 -4.8941 45 1 2.1346 0.5348 -3.7121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:41 Heat of formation + Delta-G solvation = 30.159847 kcal Electronic energy + Delta-G solvation = -24788.235434 eV Core-core repulsion = 21579.531875 eV Total energy + Delta-G solvation = -3208.703558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81566 -39.80345 -37.52517 -37.20434 -34.28401 -32.90919 -32.17959 -31.75443 -30.17886 -29.29701 -26.66454 -24.64867 -24.58195 -23.04153 -22.81689 -21.37086 -20.26928 -19.11780 -18.59239 -17.85719 -17.21353 -16.53297 -16.38509 -15.88209 -15.51616 -15.31832 -14.75470 -14.71775 -14.67677 -14.45198 -14.21325 -14.09290 -13.81227 -13.62119 -13.39705 -13.12272 -12.93076 -12.78607 -12.62535 -12.47968 -12.13359 -12.10270 -12.05215 -11.83203 -11.62116 -11.43891 -11.33631 -11.01892 -10.64031 -10.23733 -9.81874 -9.60159 -9.40883 -8.45026 -6.10215 0.52661 0.64339 1.20010 1.25233 1.45941 1.89368 2.19111 2.59459 2.97901 3.02714 3.62653 3.66058 3.77398 3.89389 4.02705 4.12011 4.19166 4.23320 4.27341 4.30378 4.37988 4.46573 4.53046 4.61085 4.70293 4.82039 4.84043 4.86079 4.87884 4.89501 4.98822 5.15622 5.19498 5.21761 5.29351 5.32792 5.34389 5.40050 5.53036 5.53879 5.66685 5.73619 5.86035 5.98261 6.23778 6.51788 6.90757 7.30707 7.85196 8.71789 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.006201 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.586983 B = 4514.389522 C = 4970.203649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.078 4.078 4 H 0.057 0.943 5 C -0.156 4.156 6 C -0.050 4.050 7 H 0.111 0.889 8 C 0.467 3.533 9 O -0.606 6.606 10 N -0.478 5.478 11 C -0.322 4.322 12 H 0.048 0.952 13 C -0.008 4.008 14 N -0.932 5.932 15 Si 0.961 3.039 16 H -0.278 1.278 17 H -0.310 1.310 18 H -0.190 1.190 19 C 0.065 3.935 20 C -0.161 4.161 21 C -0.083 4.083 22 C -0.109 4.109 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.276 0.724 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -21.845 -3.425 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.097 4.097 4 H 0.075 0.925 5 C -0.213 4.213 6 C -0.071 4.071 7 H 0.129 0.871 8 C 0.257 3.743 9 O -0.490 6.490 10 N -0.200 5.200 11 C -0.450 4.450 12 H 0.066 0.934 13 C -0.207 4.207 14 N -0.572 5.572 15 Si 0.790 3.210 16 H -0.206 1.206 17 H -0.240 1.240 18 H -0.114 1.114 19 C -0.056 4.056 20 C -0.219 4.219 21 C -0.083 4.083 22 C -0.127 4.127 23 C -0.166 4.166 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.138 4.138 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.197 -21.357 -3.427 21.631 hybrid contribution -0.221 1.212 0.595 1.368 sum -0.024 -20.145 -2.832 20.343 Atomic orbital electron populations 1.21940 0.95027 1.02773 1.01921 1.21558 0.96470 0.93256 1.03292 1.21136 0.97805 0.98268 0.92495 0.92459 1.22584 0.96814 1.00660 1.01202 1.20334 0.98452 0.89743 0.98574 0.87105 1.20913 0.83090 0.90270 0.80022 1.90524 1.31448 1.72480 1.54519 1.43887 1.05081 1.05930 1.65104 1.18790 1.04782 0.82345 1.39060 0.93436 1.26211 1.02652 0.96673 0.95144 1.69805 1.33468 1.10648 1.43304 0.85901 0.77641 0.76121 0.81320 1.20618 1.23976 1.11394 1.22577 0.85668 0.99128 0.98250 1.22182 1.01800 1.02308 0.95609 1.19457 0.93522 0.98931 0.96405 1.21802 0.92833 0.97587 1.00444 1.21374 0.98544 0.99786 0.96849 1.21437 0.98411 0.98425 0.95825 1.21362 0.92099 1.00896 1.00628 1.21285 1.00255 0.98131 0.94170 0.90562 0.93339 0.92256 0.90687 0.90536 0.94648 0.91575 0.89887 0.91422 0.86532 0.94236 0.88274 0.93880 0.90874 0.85843 0.85313 0.83876 0.83460 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.50 71.98 0.68 -2.22 16 2 C -0.11 -2.25 5.43 30.60 0.17 -2.08 16 3 C -0.08 -2.29 1.96 -10.80 -0.02 -2.31 16 4 H 0.06 1.91 7.68 -2.39 -0.02 1.89 16 5 C -0.16 -4.68 7.15 71.98 0.51 -4.16 16 6 C -0.05 -1.66 1.35 -12.29 -0.02 -1.68 16 7 H 0.11 3.10 5.10 -2.39 -0.01 3.08 16 8 C 0.47 22.00 6.29 87.66 0.55 22.55 16 9 O -0.61 -34.23 14.09 -3.07 -0.04 -34.27 16 10 N -0.48 -23.40 2.62 -635.52 -1.66 -25.06 16 11 C -0.32 -19.43 9.49 84.04 0.80 -18.63 16 12 H 0.05 3.41 7.59 -2.91 -0.02 3.39 16 13 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 14 N -0.93 -58.25 13.96 21.67 0.30 -57.94 16 15 Si 0.96 41.79 23.71 68.60 1.63 43.41 16 16 H -0.28 -11.69 7.04 99.48 0.70 -10.99 16 17 H -0.31 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.19 -6.60 3.80 99.48 0.38 -6.22 16 19 C 0.06 2.41 5.02 86.38 0.43 2.84 16 20 C -0.16 -5.22 8.33 71.98 0.60 -4.62 16 21 C -0.08 -2.64 3.96 -19.86 -0.08 -2.72 16 22 C -0.11 -3.67 5.51 22.27 0.12 -3.54 16 23 C -0.15 -4.15 10.05 22.27 0.22 -3.93 16 24 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 25 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 26 C -0.12 -3.14 9.67 22.27 0.22 -2.92 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.97 8.00 -2.39 -0.02 0.95 16 29 H 0.06 1.03 6.24 -2.39 -0.01 1.01 16 30 H 0.07 1.46 7.55 -2.38 -0.02 1.44 16 31 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 32 H 0.03 1.31 5.92 -2.39 -0.01 1.30 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.30 5.20 -2.39 -0.01 2.29 16 35 H 0.28 15.98 8.31 -92.70 -0.77 15.21 16 36 H 0.12 3.41 3.90 -2.39 -0.01 3.40 16 37 H 0.04 1.56 1.12 -2.39 0.00 1.56 16 38 H 0.10 2.42 7.58 -2.39 -0.02 2.40 16 39 H 0.04 1.67 7.27 -2.39 -0.02 1.65 16 40 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.12 4.66 4.00 -2.91 -0.01 4.65 16 42 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.14 2.87 7.95 -2.91 -0.02 2.85 16 Total: -1.00 -77.82 331.59 5.98 -71.83 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.65 Total: 30.88 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 5.11 Total: -28.85 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.36 Total: -83.01 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.27 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.63 Total: 43.41 kcal Total: -77.82 5.98 -71.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.994 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds