Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.08998 * 109.46823 * 306.47191 * 3 2 1 5 5 C 1.52997 * 109.47050 * 186.47507 * 3 2 1 6 6 C 1.52993 * 109.47063 * 66.47269 * 3 2 1 7 7 H 1.09000 * 109.47409 * 300.23969 * 6 3 2 8 8 C 1.50700 * 109.47117 * 180.23391 * 6 3 2 9 9 O 1.21279 * 120.00068 * 243.40830 * 8 6 3 10 10 N 1.34769 * 119.99988 * 63.40888 * 8 6 3 11 11 C 1.46502 * 120.00450 * 185.07815 * 10 8 6 12 12 H 1.09001 * 109.46739 * 325.00246 * 11 10 8 13 13 C 1.53004 * 109.47238 * 84.99578 * 11 10 8 14 14 C 1.50695 * 109.47442 * 205.00097 * 11 10 8 15 15 H 1.08002 * 120.00194 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99964 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99915 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 120.00237 * 359.97438 * 16 14 11 19 19 H 1.48502 * 109.46995 * 89.99976 * 18 16 14 20 20 H 1.48498 * 109.47483 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.47016 * 330.00244 * 18 16 14 22 22 C 1.50709 * 109.47099 * 60.23854 * 6 3 2 23 23 C 1.38231 * 120.00162 * 69.82264 * 22 6 3 24 24 C 1.38239 * 120.00006 * 179.79084 * 23 22 6 25 25 C 1.38231 * 119.99421 * 0.44126 * 24 23 22 26 26 C 1.38233 * 120.00626 * 359.81615 * 25 24 23 27 27 C 1.38235 * 119.99971 * 359.97367 * 26 25 24 28 28 H 1.09001 * 109.46962 * 54.13917 * 1 2 3 29 29 H 1.08997 * 109.46939 * 174.13691 * 1 2 3 30 30 H 1.08998 * 109.46785 * 294.14157 * 1 2 3 31 31 H 1.08995 * 109.47391 * 120.00146 * 2 1 3 32 32 H 1.09010 * 109.47315 * 240.00253 * 2 1 3 33 33 H 1.09002 * 109.47577 * 68.86421 * 5 3 2 34 34 H 1.08999 * 109.47313 * 188.86096 * 5 3 2 35 35 H 1.08998 * 109.47593 * 308.86519 * 5 3 2 36 36 H 0.97002 * 119.99905 * 5.07841 * 10 8 6 37 37 H 1.08997 * 109.47297 * 300.00651 * 13 11 10 38 38 H 1.09001 * 109.46711 * 60.00650 * 13 11 10 39 39 H 1.08998 * 109.46877 * 180.02562 * 13 11 10 40 40 H 0.97004 * 119.99827 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00047 * 359.97438 * 23 22 6 42 42 H 1.07997 * 119.99787 * 180.27250 * 24 23 22 43 43 H 1.08009 * 119.99412 * 179.83533 * 25 24 23 44 44 H 1.08001 * 120.00083 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.00060 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5852 1.9886 -0.8264 5 6 3.5613 1.4455 -0.1627 6 6 1.6672 2.1152 1.3225 7 1 0.5836 2.1093 1.4404 8 6 2.1645 3.5378 1.3202 9 8 3.0018 3.8888 2.1244 10 7 1.6788 4.4200 0.4246 11 6 2.2405 5.7709 0.3482 12 1 2.5226 6.1040 1.3470 13 6 3.4766 5.7591 -0.5534 14 6 1.2110 6.7115 -0.2229 15 1 0.2356 6.3403 -0.5008 16 6 1.5139 8.0462 -0.3896 17 7 0.6152 8.8672 -0.8876 18 14 3.2002 8.6887 0.0930 19 1 4.1187 8.5907 -1.0697 20 1 3.0869 10.1077 0.5161 21 1 3.7356 7.8785 1.2165 22 6 2.3008 1.3635 2.4647 23 6 3.6706 1.4066 2.6452 24 6 4.2514 0.7205 3.6954 25 6 3.4632 -0.0160 4.5597 26 6 2.0939 -0.0635 4.3762 27 6 1.5127 0.6261 3.3285 28 1 -0.3633 0.6020 -0.8329 29 1 -0.3633 -1.0223 -0.1050 30 1 -0.3633 0.4203 0.9378 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 3.8200 1.1120 -1.1676 34 1 3.9415 2.4549 -0.0059 35 1 4.0064 0.7718 0.5695 36 1 0.9573 4.1605 -0.1695 37 1 4.2212 5.0788 -0.1403 38 1 3.1945 5.4260 -1.5522 39 1 3.8947 6.7641 -0.6098 40 1 0.8285 9.8062 -1.0053 41 1 4.2869 1.9787 1.9674 42 1 5.3211 0.7578 3.8390 43 1 3.9172 -0.5542 5.3787 44 1 1.4781 -0.6386 5.0517 45 1 0.4429 0.5894 3.1853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = -25.720554 kcal Electronic energy + Delta-G solvation = -24012.442044 eV Core-core repulsion = 20801.315330 eV Total energy + Delta-G solvation = -3211.126714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48400 -38.35016 -36.42692 -34.98582 -32.36642 -31.76294 -31.03249 -30.09441 -29.57561 -27.13942 -25.19012 -23.76299 -22.33525 -22.16680 -21.23259 -20.02827 -19.17297 -17.40564 -16.45426 -16.04189 -15.76399 -15.48378 -15.06333 -14.69040 -14.31519 -13.86972 -13.67441 -13.56684 -13.29021 -13.03619 -12.91900 -12.68720 -12.46062 -12.22290 -12.19114 -11.85359 -11.81554 -11.61181 -11.29175 -11.10105 -11.02354 -10.81084 -10.69773 -10.54386 -10.28863 -10.18647 -9.69034 -9.22403 -9.06784 -8.75208 -8.66031 -8.51773 -8.11772 -6.20672 -4.22856 1.48333 1.58710 3.22131 3.25340 3.35393 3.39921 3.80968 4.12887 4.31837 4.60068 4.82405 4.88689 5.03538 5.05361 5.11501 5.14463 5.22277 5.31212 5.43323 5.49864 5.55085 5.64766 5.70765 5.72845 5.82431 5.89485 5.99771 6.05559 6.06524 6.19091 6.21847 6.28858 6.31983 6.34794 6.41059 6.55961 6.58100 6.66443 6.81428 6.85788 7.14712 7.21072 7.31610 7.53802 8.16768 8.54845 8.76924 8.96751 9.40590 10.91592 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.004706 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.326712 B = 5948.798437 C = 6524.450731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.076 4.076 4 H 0.081 0.919 5 C -0.159 4.159 6 C -0.070 4.070 7 H 0.099 0.901 8 C 0.511 3.489 9 O -0.548 6.548 10 N -0.701 5.701 11 C 0.236 3.764 12 H 0.049 0.951 13 C -0.160 4.160 14 C -0.533 4.533 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.893 5.893 18 Si 0.885 3.115 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.262 1.262 22 C -0.057 4.057 23 C -0.077 4.077 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.114 4.114 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.394 0.606 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -19.875 3.756 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.216 4.216 6 C -0.092 4.092 7 H 0.117 0.883 8 C 0.295 3.705 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.133 3.867 12 H 0.066 0.934 13 C -0.218 4.218 14 C -0.571 4.571 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.530 5.530 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.187 1.187 22 C -0.057 4.057 23 C -0.095 4.095 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.227 0.773 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.441 -19.395 4.255 20.152 hybrid contribution 0.423 0.494 -0.108 0.659 sum 3.863 -18.902 4.146 19.733 Atomic orbital electron populations 1.21838 0.95871 1.01455 1.02050 1.21588 0.95895 0.95817 1.02237 1.21104 0.96909 0.96252 0.95235 0.90072 1.22173 0.95188 1.02597 1.01655 1.20468 1.01375 0.92588 0.94739 0.88255 1.20235 0.82387 0.86772 0.81081 1.90662 1.33719 1.79378 1.38871 1.46148 1.37875 1.13952 1.36863 1.19082 0.91838 0.79171 0.96646 0.93361 1.22449 0.98765 0.99743 1.00833 1.21041 0.99963 0.92600 1.43540 0.90245 1.24829 0.97110 0.96516 0.94076 1.69871 1.34303 1.04675 1.44147 0.86884 0.84442 0.77611 0.79583 1.20341 1.22177 1.18689 1.19282 0.93760 0.97021 0.95641 1.21257 0.94677 0.96334 0.97252 1.21128 0.99697 0.98262 0.95732 1.21064 0.94029 0.99835 0.99354 1.20985 0.94981 1.00633 0.98231 1.20974 0.99300 0.97789 0.95135 0.92473 0.92955 0.92593 0.91474 0.91912 0.92629 0.92001 0.91660 0.77259 0.94767 0.92805 0.93502 0.92319 0.85207 0.86523 0.86709 0.86550 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.55 37.16 0.35 -1.02 16 2 C -0.12 -1.16 5.25 -26.73 -0.14 -1.30 16 3 C -0.08 -0.90 2.15 -90.62 -0.19 -1.09 16 4 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 5 C -0.16 -1.96 7.54 37.16 0.28 -1.68 16 6 C -0.07 -0.97 2.10 -92.92 -0.20 -1.17 16 7 H 0.10 1.24 6.51 -51.93 -0.34 0.91 16 8 C 0.51 9.41 5.50 -10.99 -0.06 9.35 16 9 O -0.55 -12.04 13.82 5.56 0.08 -11.96 16 10 N -0.70 -13.65 4.98 -54.93 -0.27 -13.92 16 11 C 0.24 5.59 2.19 -69.08 -0.15 5.44 16 12 H 0.05 1.28 6.56 -51.93 -0.34 0.94 16 13 C -0.16 -3.52 8.97 37.16 0.33 -3.18 16 14 C -0.53 -14.37 9.31 -34.44 -0.32 -14.69 16 15 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 16 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 17 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 18 Si 0.89 21.85 24.37 -169.99 -4.14 17.70 16 19 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 22 C -0.06 -0.79 3.29 -104.62 -0.34 -1.13 16 23 C -0.08 -1.13 6.01 -39.58 -0.24 -1.37 16 24 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 25 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 26 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.11 -1.41 9.28 -39.58 -0.37 -1.78 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 6.87 -51.93 -0.36 0.14 16 31 H 0.07 0.70 6.70 -51.93 -0.35 0.35 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 35 H 0.06 0.78 5.69 -51.93 -0.30 0.48 16 36 H 0.39 6.80 8.37 -40.82 -0.34 6.46 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 2.03 5.08 -52.49 -0.27 1.76 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.06 8.06 -52.48 -0.42 0.63 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.23 7.95 -52.49 -0.42 0.82 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -31.12 345.11 -7.73 -38.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.03 Total: 7.16 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.33 Total: -17.35 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.50 Total: -39.60 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.12 -7.73 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.126 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds