Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47232 * 2 1 4 4 H 1.08998 * 109.46823 * 306.47191 * 3 2 1 5 5 C 1.52997 * 109.47050 * 186.47507 * 3 2 1 6 6 C 1.52993 * 109.47063 * 66.47269 * 3 2 1 7 7 H 1.09000 * 109.47409 * 300.23969 * 6 3 2 8 8 C 1.50700 * 109.47117 * 180.23391 * 6 3 2 9 9 O 1.21279 * 120.00068 * 243.40830 * 8 6 3 10 10 N 1.34769 * 119.99988 * 63.40888 * 8 6 3 11 11 C 1.46502 * 120.00450 * 185.07815 * 10 8 6 12 12 H 1.09001 * 109.46739 * 325.00246 * 11 10 8 13 13 C 1.53004 * 109.47238 * 84.99578 * 11 10 8 14 14 C 1.50695 * 109.47442 * 205.00097 * 11 10 8 15 15 H 1.08002 * 120.00194 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99964 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99915 * 180.02562 * 16 14 11 18 18 Si 1.86800 * 120.00237 * 359.97438 * 16 14 11 19 19 H 1.48502 * 109.46995 * 89.99976 * 18 16 14 20 20 H 1.48498 * 109.47483 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.47016 * 330.00244 * 18 16 14 22 22 C 1.50709 * 109.47099 * 60.23854 * 6 3 2 23 23 C 1.38231 * 120.00162 * 69.82264 * 22 6 3 24 24 C 1.38239 * 120.00006 * 179.79084 * 23 22 6 25 25 C 1.38231 * 119.99421 * 0.44126 * 24 23 22 26 26 C 1.38233 * 120.00626 * 359.81615 * 25 24 23 27 27 C 1.38235 * 119.99971 * 359.97367 * 26 25 24 28 28 H 1.09001 * 109.46962 * 54.13917 * 1 2 3 29 29 H 1.08997 * 109.46939 * 174.13691 * 1 2 3 30 30 H 1.08998 * 109.46785 * 294.14157 * 1 2 3 31 31 H 1.08995 * 109.47391 * 120.00146 * 2 1 3 32 32 H 1.09010 * 109.47315 * 240.00253 * 2 1 3 33 33 H 1.09002 * 109.47577 * 68.86421 * 5 3 2 34 34 H 1.08999 * 109.47313 * 188.86096 * 5 3 2 35 35 H 1.08998 * 109.47593 * 308.86519 * 5 3 2 36 36 H 0.97002 * 119.99905 * 5.07841 * 10 8 6 37 37 H 1.08997 * 109.47297 * 300.00651 * 13 11 10 38 38 H 1.09001 * 109.46711 * 60.00650 * 13 11 10 39 39 H 1.08998 * 109.46877 * 180.02562 * 13 11 10 40 40 H 0.97004 * 119.99827 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00047 * 359.97438 * 23 22 6 42 42 H 1.07997 * 119.99787 * 180.27250 * 24 23 22 43 43 H 1.08009 * 119.99412 * 179.83533 * 25 24 23 44 44 H 1.08001 * 120.00083 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.00060 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5852 1.9886 -0.8264 5 6 3.5613 1.4455 -0.1627 6 6 1.6672 2.1152 1.3225 7 1 0.5836 2.1093 1.4404 8 6 2.1645 3.5378 1.3202 9 8 3.0018 3.8888 2.1244 10 7 1.6788 4.4200 0.4246 11 6 2.2405 5.7709 0.3482 12 1 2.5226 6.1040 1.3470 13 6 3.4766 5.7591 -0.5534 14 6 1.2110 6.7115 -0.2229 15 1 0.2356 6.3403 -0.5008 16 6 1.5139 8.0462 -0.3896 17 7 0.6152 8.8672 -0.8876 18 14 3.2002 8.6887 0.0930 19 1 4.1187 8.5907 -1.0697 20 1 3.0869 10.1077 0.5161 21 1 3.7356 7.8785 1.2165 22 6 2.3008 1.3635 2.4647 23 6 3.6706 1.4066 2.6452 24 6 4.2514 0.7205 3.6954 25 6 3.4632 -0.0160 4.5597 26 6 2.0939 -0.0635 4.3762 27 6 1.5127 0.6261 3.3285 28 1 -0.3633 0.6020 -0.8329 29 1 -0.3633 -1.0223 -0.1050 30 1 -0.3633 0.4203 0.9378 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 3.8200 1.1120 -1.1676 34 1 3.9415 2.4549 -0.0059 35 1 4.0064 0.7718 0.5695 36 1 0.9573 4.1605 -0.1695 37 1 4.2212 5.0788 -0.1403 38 1 3.1945 5.4260 -1.5522 39 1 3.8947 6.7641 -0.6098 40 1 0.8285 9.8062 -1.0053 41 1 4.2869 1.9787 1.9674 42 1 5.3211 0.7578 3.8390 43 1 3.9172 -0.5542 5.3787 44 1 1.4781 -0.6386 5.0517 45 1 0.4429 0.5894 3.1853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = -44.271980 kcal Electronic energy + Delta-G solvation = -24013.246494 eV Core-core repulsion = 20801.315330 eV Total energy + Delta-G solvation = -3211.931165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69366 -39.62102 -37.46167 -36.76784 -34.37386 -32.73415 -31.98433 -31.75315 -30.53579 -28.29316 -27.22432 -24.68344 -23.51098 -23.27181 -22.45817 -21.51589 -20.44123 -19.06098 -17.90590 -17.49246 -17.17056 -16.63630 -16.42253 -15.93223 -15.54632 -15.24799 -14.98823 -14.68053 -14.51509 -14.31563 -14.25613 -14.10681 -13.84697 -13.52401 -13.42785 -13.16833 -13.14001 -12.80546 -12.68754 -12.57587 -12.15412 -11.97900 -11.92292 -11.62942 -11.58464 -11.46677 -11.28959 -11.21779 -10.87684 -10.54299 -9.83193 -9.65145 -9.49731 -8.38823 -6.44077 0.52083 0.62745 1.25137 1.33892 1.43044 1.78651 2.24897 2.46815 2.97582 3.02428 3.58647 3.79815 3.88976 4.12748 4.15596 4.22913 4.26850 4.37073 4.45456 4.46637 4.54806 4.58593 4.66451 4.70268 4.72939 4.81252 4.83292 4.89686 4.99602 5.01332 5.16581 5.20663 5.24943 5.28258 5.31845 5.33359 5.43529 5.45401 5.56211 5.65007 5.67712 5.71926 5.82629 6.14099 6.21711 6.57608 6.90239 7.19465 7.48134 8.76486 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.004706 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.326712 B = 5948.798437 C = 6524.450731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.073 4.073 4 H 0.083 0.917 5 C -0.155 4.155 6 C -0.058 4.058 7 H 0.116 0.884 8 C 0.510 3.490 9 O -0.584 6.584 10 N -0.700 5.700 11 C 0.243 3.757 12 H 0.019 0.981 13 C -0.152 4.152 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.933 5.933 18 Si 0.937 3.063 19 H -0.259 1.259 20 H -0.293 1.293 21 H -0.266 1.266 22 C -0.072 4.072 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.405 0.595 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.270 0.730 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -22.174 4.223 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.092 4.092 4 H 0.101 0.899 5 C -0.212 4.212 6 C -0.079 4.079 7 H 0.134 0.866 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.349 5.349 11 C 0.138 3.862 12 H 0.037 0.963 13 C -0.210 4.210 14 C -0.569 4.569 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.572 5.572 18 Si 0.765 3.235 19 H -0.184 1.184 20 H -0.220 1.220 21 H -0.191 1.191 22 C -0.073 4.073 23 C -0.116 4.116 24 C -0.161 4.161 25 C -0.143 4.143 26 C -0.148 4.148 27 C -0.137 4.137 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.553 -21.727 4.707 22.513 hybrid contribution 0.347 1.143 -0.191 1.209 sum 3.900 -20.584 4.516 21.432 Atomic orbital electron populations 1.21845 0.94973 1.02314 1.02089 1.21509 0.96574 0.94000 1.02571 1.21135 0.96479 0.97606 0.93959 0.89862 1.22127 0.95678 1.00861 1.02556 1.20435 1.02002 0.89202 0.96298 0.86632 1.21026 0.81388 0.88223 0.79623 1.90641 1.35301 1.80373 1.40180 1.45990 1.38425 1.12713 1.37774 1.18715 0.91805 0.80697 0.95007 0.96336 1.22322 0.98029 0.99579 1.01105 1.21258 0.99814 0.93271 1.42589 0.92485 1.25523 1.00243 0.96930 0.94229 1.69973 1.36197 1.05163 1.45872 0.86033 0.80954 0.76834 0.79689 1.18438 1.21994 1.19070 1.19341 0.93733 0.97943 0.96268 1.21217 0.95075 0.97312 0.98030 1.21354 1.00659 0.98422 0.95647 1.21411 0.94270 0.99175 0.99463 1.21372 0.95293 1.00089 0.98064 1.21237 1.00198 0.97378 0.94871 0.92410 0.91720 0.92607 0.91853 0.90828 0.91157 0.94904 0.91518 0.75947 0.93743 0.91523 0.94265 0.92078 0.87264 0.85453 0.84092 0.83720 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.55 71.98 0.69 -1.65 16 2 C -0.11 -1.89 5.25 30.59 0.16 -1.72 16 3 C -0.07 -1.62 2.15 -10.80 -0.02 -1.64 16 4 H 0.08 1.81 7.94 -2.39 -0.02 1.79 16 5 C -0.16 -3.74 7.54 71.98 0.54 -3.20 16 6 C -0.06 -1.56 2.10 -12.29 -0.03 -1.58 16 7 H 0.12 2.70 6.51 -2.39 -0.02 2.68 16 8 C 0.51 18.87 5.50 87.66 0.48 19.35 16 9 O -0.58 -26.20 13.82 -3.03 -0.04 -26.24 16 10 N -0.70 -27.38 4.98 -446.10 -2.22 -29.61 16 11 C 0.24 11.59 2.19 44.24 0.10 11.69 16 12 H 0.02 1.01 6.56 -2.39 -0.02 1.00 16 13 C -0.15 -6.62 8.97 71.98 0.65 -5.98 16 14 C -0.53 -29.05 9.31 25.60 0.24 -28.81 16 15 H 0.06 3.31 7.98 -2.91 -0.02 3.28 16 16 C 0.03 1.73 5.45 84.65 0.46 2.19 16 17 N -0.93 -56.07 13.96 21.45 0.30 -55.77 16 18 Si 0.94 45.22 24.37 68.60 1.67 46.89 16 19 H -0.26 -11.67 6.87 99.48 0.68 -10.99 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.89 6.53 99.48 0.65 -12.24 16 22 C -0.07 -1.94 3.29 -19.86 -0.07 -2.01 16 23 C -0.10 -2.85 6.01 22.27 0.13 -2.71 16 24 C -0.14 -3.54 10.05 22.27 0.22 -3.32 16 25 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 26 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 27 C -0.12 -2.66 9.28 22.27 0.21 -2.46 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.84 6.87 -2.39 -0.02 0.82 16 31 H 0.06 1.17 6.70 -2.39 -0.02 1.16 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.03 0.97 6.47 -2.39 -0.02 0.95 16 35 H 0.07 1.57 5.69 -2.39 -0.01 1.56 16 36 H 0.41 13.92 8.37 -92.71 -0.78 13.15 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.04 1.75 3.28 -2.39 -0.01 1.75 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.11 3.55 5.08 -2.91 -0.01 3.53 16 42 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.14 2.45 7.95 -2.91 -0.02 2.42 16 Total: -1.00 -67.81 345.11 4.04 -63.77 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.13 Total: 27.56 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.21 Total: -26.61 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.92 Total: -85.37 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -67.81 4.04 -63.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.497 kcal (2) G-P(sol) polarization free energy of solvation -67.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds