Wall clock time and date at job start Tue Mar 31 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 H 1.09003 * 109.47562 * 53.36638 * 3 2 1 5 5 C 1.53010 * 109.47271 * 173.36652 * 3 2 1 6 6 C 1.53005 * 109.47507 * 293.36289 * 3 2 1 7 7 H 1.08994 * 109.46759 * 307.21128 * 6 3 2 8 8 C 1.50697 * 109.47291 * 187.20562 * 6 3 2 9 9 O 1.21279 * 120.00133 * 264.54049 * 8 6 3 10 10 N 1.34785 * 119.99786 * 84.54113 * 8 6 3 11 11 C 1.46500 * 119.99903 * 175.01298 * 10 8 6 12 12 C 1.53003 * 109.46958 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.46982 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00208 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99972 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99910 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99767 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47171 * 90.00115 * 17 15 13 19 19 H 1.48498 * 109.47261 * 209.99720 * 17 15 13 20 20 H 1.48502 * 109.47488 * 329.99942 * 17 15 13 21 21 C 1.50702 * 109.46751 * 67.20927 * 6 3 2 22 22 C 1.38237 * 119.99621 * 234.59006 * 21 6 3 23 23 C 1.38240 * 119.99791 * 179.97438 * 22 21 6 24 24 C 1.38238 * 119.99834 * 0.07791 * 23 22 21 25 25 C 1.38236 * 120.00151 * 359.87406 * 24 23 22 26 26 C 1.38231 * 119.99855 * 0.10151 * 25 24 23 27 27 H 1.09005 * 109.47272 * 311.48178 * 1 2 3 28 28 H 1.09000 * 109.47391 * 71.48017 * 1 2 3 29 29 H 1.09000 * 109.47833 * 191.48299 * 1 2 3 30 30 H 1.09004 * 109.46939 * 240.00155 * 2 1 3 31 31 H 1.08999 * 109.47605 * 120.00283 * 2 1 3 32 32 H 1.08998 * 109.46912 * 185.91511 * 5 3 2 33 33 H 1.09003 * 109.46471 * 305.91470 * 5 3 2 34 34 H 1.08998 * 109.47217 * 65.90838 * 5 3 2 35 35 H 0.96996 * 119.99846 * 355.01387 * 10 8 6 36 36 H 1.08999 * 109.46774 * 299.99875 * 11 10 8 37 37 H 1.08998 * 109.46891 * 60.00127 * 11 10 8 38 38 H 1.09006 * 109.46981 * 299.99832 * 12 11 10 39 39 H 1.08999 * 109.47297 * 59.99694 * 12 11 10 40 40 H 0.97003 * 119.99750 * 180.02562 * 16 15 13 41 41 H 1.07996 * 120.00350 * 359.70449 * 22 21 6 42 42 H 1.07995 * 119.99691 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99503 * 180.02562 * 24 23 22 44 44 H 1.07992 * 119.99951 * 180.11007 * 25 24 23 45 45 H 1.08003 * 119.99986 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5829 1.9895 0.8247 5 6 3.5609 1.4457 0.1666 6 6 1.6706 2.1141 -1.3242 7 1 2.0185 1.4981 -2.1534 8 6 2.3223 3.4709 -1.3983 9 8 1.7034 4.4597 -1.0666 10 7 3.5929 3.5853 -1.8332 11 6 4.1902 4.9114 -2.0092 12 6 5.6286 4.7606 -2.5084 13 6 6.2432 6.1247 -2.6889 14 1 5.6656 7.0105 -2.4699 15 6 7.5431 6.2418 -3.1337 16 7 8.0792 7.4322 -3.2916 17 14 8.5424 4.7096 -3.5118 18 1 8.3517 4.3331 -4.9355 19 1 9.9804 4.9818 -3.2602 20 1 8.0896 3.5957 -2.6403 21 6 0.1741 2.2704 -1.4079 22 6 -0.5140 1.7640 -2.4947 23 6 -1.8869 1.9069 -2.5712 24 6 -2.5714 2.5577 -1.5618 25 6 -1.8834 3.0632 -0.4746 26 6 -0.5107 2.9198 -0.3978 27 1 -0.3634 0.6807 0.7699 28 1 -0.3634 0.3264 -0.9744 29 1 -0.3635 -1.0070 0.2046 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.9126 2.4720 0.2720 33 1 3.8301 0.8762 1.0562 34 1 4.0234 0.9912 -0.7095 35 1 4.1118 2.7897 -2.0296 36 1 3.6103 5.4771 -2.7384 37 1 4.1896 5.4396 -1.0557 38 1 6.2087 4.1947 -1.7795 39 1 5.6288 4.2325 -3.4619 40 1 8.9936 7.5146 -3.6049 41 1 0.0214 1.2606 -3.2860 42 1 -2.4243 1.5117 -3.4205 43 1 -3.6440 2.6689 -1.6215 44 1 -2.4183 3.5700 0.3148 45 1 0.0269 3.3151 0.4514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:46 Heat of formation + Delta-G solvation = -32.626447 kcal Electronic energy + Delta-G solvation = -23346.908843 eV Core-core repulsion = 20135.482667 eV Total energy + Delta-G solvation = -3211.426176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70874 -38.68064 -36.49749 -35.00538 -32.81291 -31.77409 -31.01341 -30.83859 -29.83621 -27.16717 -24.90896 -23.51687 -22.75471 -21.78307 -20.94663 -20.62061 -19.53156 -17.16946 -16.92511 -16.80025 -15.61458 -15.45431 -14.98611 -14.70968 -14.39877 -14.18387 -14.09098 -13.84457 -13.40295 -13.35847 -12.96359 -12.95633 -12.73115 -12.60160 -12.38305 -11.97195 -11.53581 -11.49014 -11.25176 -11.18841 -11.07427 -10.88178 -10.84230 -10.64063 -10.38215 -10.24609 -9.96973 -9.47521 -9.29009 -8.83902 -8.64695 -8.55556 -8.46425 -6.11811 -4.11892 1.30706 1.41903 2.92754 3.24217 3.31858 3.33007 3.52485 3.88237 4.36776 4.44832 4.59816 4.63540 4.89603 4.95284 5.03225 5.12343 5.21104 5.21474 5.22779 5.24451 5.39680 5.48424 5.56231 5.59057 5.63884 5.77215 5.88964 5.91639 5.95729 6.04374 6.11894 6.13799 6.15835 6.20895 6.25474 6.43604 6.51211 6.55682 6.61751 6.76734 6.97851 7.13659 7.22514 7.66116 7.91509 8.42995 8.58526 8.92741 9.48309 11.01296 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.003647 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.965492 B = 7676.208627 C = 8283.975449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.078 4.078 4 H 0.079 0.921 5 C -0.161 4.161 6 C -0.067 4.067 7 H 0.096 0.904 8 C 0.515 3.485 9 O -0.538 6.538 10 N -0.726 5.726 11 C 0.130 3.870 12 C -0.021 4.021 13 C -0.523 4.523 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.051 4.051 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.082 4.082 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 -17.986 5.275 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.151 4.151 3 C -0.096 4.096 4 H 0.097 0.903 5 C -0.218 4.218 6 C -0.089 4.089 7 H 0.114 0.886 8 C 0.300 3.700 9 O -0.415 6.415 10 N -0.377 5.377 11 C 0.008 3.992 12 C -0.059 4.059 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.051 4.051 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.100 4.100 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.470 -17.138 5.439 25.070 hybrid contribution 0.970 -0.993 -0.453 1.460 sum -16.500 -18.131 4.986 25.017 Atomic orbital electron populations 1.22336 0.95724 1.01043 1.03615 1.21540 0.96276 0.95249 1.01987 1.21170 0.96600 0.96318 0.95556 0.90250 1.22067 0.94534 1.03081 1.02161 1.20467 0.92643 0.95354 1.00407 0.88564 1.20274 0.81955 0.90437 0.77324 1.90691 1.63450 1.39181 1.48136 1.46438 1.13249 1.10803 1.67173 1.21495 0.95126 0.81693 1.00915 1.19788 0.91177 0.98921 0.96032 1.20922 0.98297 0.91532 1.45352 0.90659 1.25003 0.97562 0.95929 0.94792 1.69904 1.14846 1.22485 1.46436 0.86756 0.79442 0.83845 0.79055 1.20232 1.21267 1.19069 1.19233 0.93305 0.97685 0.94886 1.20963 0.94521 1.00744 0.97474 1.21021 0.94204 1.00151 0.98913 1.21089 0.99651 0.98917 0.94578 1.21110 0.94397 1.00098 0.98429 1.20952 0.93803 0.96614 0.98649 0.92641 0.90614 0.93634 0.91896 0.91861 0.91476 0.92019 0.92275 0.77078 0.92128 0.91951 0.96020 0.96507 0.92553 0.86254 0.86327 0.86490 0.86324 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 8.37 37.15 0.31 -1.22 16 2 C -0.11 -0.97 5.39 -26.74 -0.14 -1.11 16 3 C -0.08 -0.79 2.05 -90.61 -0.19 -0.98 16 4 H 0.08 0.88 6.78 -51.93 -0.35 0.53 16 5 C -0.16 -1.64 7.93 37.16 0.29 -1.35 16 6 C -0.07 -0.79 1.97 -92.92 -0.18 -0.98 16 7 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 8 C 0.52 8.21 6.02 -10.98 -0.07 8.15 16 9 O -0.54 -10.62 15.03 5.56 0.08 -10.54 16 10 N -0.73 -11.70 4.48 -60.29 -0.27 -11.97 16 11 C 0.13 2.64 5.62 -4.04 -0.02 2.61 16 12 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 13 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 17 Si 0.88 20.95 27.47 -169.99 -4.67 16.29 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 21 C -0.05 -0.61 2.29 -104.62 -0.24 -0.85 16 22 C -0.12 -1.29 7.76 -39.58 -0.31 -1.60 16 23 C -0.12 -1.26 10.04 -39.58 -0.40 -1.66 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 26 C -0.08 -1.03 6.24 -39.59 -0.25 -1.27 16 27 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 28 H 0.08 0.72 4.04 -51.93 -0.21 0.51 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.07 0.83 6.68 -51.93 -0.35 0.48 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.54 7.77 -51.93 -0.40 0.13 16 35 H 0.40 5.36 7.44 -40.82 -0.30 5.06 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.61 6.92 -52.48 -0.36 1.24 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -32.01 351.23 -8.64 -40.65 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.32 Total: 4.19 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.53 Total: -17.34 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.50 Total: -38.54 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.01 -8.64 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds