Wall clock time and date at job start Tue Mar 31 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 H 1.09003 * 109.47562 * 53.36638 * 3 2 1 5 5 C 1.53010 * 109.47271 * 173.36652 * 3 2 1 6 6 C 1.53005 * 109.47507 * 293.36289 * 3 2 1 7 7 H 1.08994 * 109.46759 * 307.21128 * 6 3 2 8 8 C 1.50697 * 109.47291 * 187.20562 * 6 3 2 9 9 O 1.21279 * 120.00133 * 264.54049 * 8 6 3 10 10 N 1.34785 * 119.99786 * 84.54113 * 8 6 3 11 11 C 1.46500 * 119.99903 * 175.01298 * 10 8 6 12 12 C 1.53003 * 109.46958 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.46982 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00208 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99972 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99910 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99767 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47171 * 90.00115 * 17 15 13 19 19 H 1.48498 * 109.47261 * 209.99720 * 17 15 13 20 20 H 1.48502 * 109.47488 * 329.99942 * 17 15 13 21 21 C 1.50702 * 109.46751 * 67.20927 * 6 3 2 22 22 C 1.38237 * 119.99621 * 234.59006 * 21 6 3 23 23 C 1.38240 * 119.99791 * 179.97438 * 22 21 6 24 24 C 1.38238 * 119.99834 * 0.07791 * 23 22 21 25 25 C 1.38236 * 120.00151 * 359.87406 * 24 23 22 26 26 C 1.38231 * 119.99855 * 0.10151 * 25 24 23 27 27 H 1.09005 * 109.47272 * 311.48178 * 1 2 3 28 28 H 1.09000 * 109.47391 * 71.48017 * 1 2 3 29 29 H 1.09000 * 109.47833 * 191.48299 * 1 2 3 30 30 H 1.09004 * 109.46939 * 240.00155 * 2 1 3 31 31 H 1.08999 * 109.47605 * 120.00283 * 2 1 3 32 32 H 1.08998 * 109.46912 * 185.91511 * 5 3 2 33 33 H 1.09003 * 109.46471 * 305.91470 * 5 3 2 34 34 H 1.08998 * 109.47217 * 65.90838 * 5 3 2 35 35 H 0.96996 * 119.99846 * 355.01387 * 10 8 6 36 36 H 1.08999 * 109.46774 * 299.99875 * 11 10 8 37 37 H 1.08998 * 109.46891 * 60.00127 * 11 10 8 38 38 H 1.09006 * 109.46981 * 299.99832 * 12 11 10 39 39 H 1.08999 * 109.47297 * 59.99694 * 12 11 10 40 40 H 0.97003 * 119.99750 * 180.02562 * 16 15 13 41 41 H 1.07996 * 120.00350 * 359.70449 * 22 21 6 42 42 H 1.07995 * 119.99691 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99503 * 180.02562 * 24 23 22 44 44 H 1.07992 * 119.99951 * 180.11007 * 25 24 23 45 45 H 1.08003 * 119.99986 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5829 1.9895 0.8247 5 6 3.5609 1.4457 0.1666 6 6 1.6706 2.1141 -1.3242 7 1 2.0185 1.4981 -2.1534 8 6 2.3223 3.4709 -1.3983 9 8 1.7034 4.4597 -1.0666 10 7 3.5929 3.5853 -1.8332 11 6 4.1902 4.9114 -2.0092 12 6 5.6286 4.7606 -2.5084 13 6 6.2432 6.1247 -2.6889 14 1 5.6656 7.0105 -2.4699 15 6 7.5431 6.2418 -3.1337 16 7 8.0792 7.4322 -3.2916 17 14 8.5424 4.7096 -3.5118 18 1 8.3517 4.3331 -4.9355 19 1 9.9804 4.9818 -3.2602 20 1 8.0896 3.5957 -2.6403 21 6 0.1741 2.2704 -1.4079 22 6 -0.5140 1.7640 -2.4947 23 6 -1.8869 1.9069 -2.5712 24 6 -2.5714 2.5577 -1.5618 25 6 -1.8834 3.0632 -0.4746 26 6 -0.5107 2.9198 -0.3978 27 1 -0.3634 0.6807 0.7699 28 1 -0.3634 0.3264 -0.9744 29 1 -0.3635 -1.0070 0.2046 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.9126 2.4720 0.2720 33 1 3.8301 0.8762 1.0562 34 1 4.0234 0.9912 -0.7095 35 1 4.1118 2.7897 -2.0296 36 1 3.6103 5.4771 -2.7384 37 1 4.1896 5.4396 -1.0557 38 1 6.2087 4.1947 -1.7795 39 1 5.6288 4.2325 -3.4619 40 1 8.9936 7.5146 -3.6049 41 1 0.0214 1.2606 -3.2860 42 1 -2.4243 1.5117 -3.4205 43 1 -3.6440 2.6689 -1.6215 44 1 -2.4183 3.5700 0.3148 45 1 0.0269 3.3151 0.4514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:45 Heat of formation + Delta-G solvation = -51.309014 kcal Electronic energy + Delta-G solvation = -23347.718980 eV Core-core repulsion = 20135.482667 eV Total energy + Delta-G solvation = -3212.236313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74110 -39.78070 -37.38351 -36.63729 -34.78929 -32.67589 -32.21562 -31.75432 -31.10591 -28.20731 -26.61020 -24.35837 -23.57555 -22.95094 -22.45616 -21.73798 -20.60113 -19.01668 -18.14303 -17.84767 -16.75134 -16.65873 -16.28549 -15.97986 -15.74983 -15.53094 -15.06977 -14.86997 -14.65193 -14.39093 -14.22275 -14.03634 -13.86574 -13.57960 -13.36784 -13.23893 -13.03841 -12.73916 -12.31002 -12.19981 -12.16314 -11.95934 -11.82587 -11.76373 -11.67048 -11.63689 -11.51757 -11.42795 -10.79207 -10.71480 -10.00569 -9.66897 -9.37160 -8.30461 -6.37958 0.46842 0.58881 1.38876 1.41804 1.53047 1.66371 2.28892 2.36732 2.98261 3.04670 3.56965 3.68183 3.84300 4.09523 4.13466 4.21767 4.31068 4.34096 4.37838 4.41788 4.43105 4.52881 4.62243 4.69905 4.74288 4.78694 4.86051 4.86764 5.04133 5.11538 5.16654 5.21163 5.22559 5.24294 5.35455 5.40112 5.42039 5.44812 5.55751 5.63536 5.65355 5.69480 5.76867 6.17268 6.21770 6.62591 6.71243 7.26495 7.31129 8.86500 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.003647 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.965492 B = 7676.208627 C = 8283.975449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.073 4.073 4 H 0.061 0.939 5 C -0.161 4.161 6 C -0.057 4.057 7 H 0.123 0.877 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.715 5.715 11 C 0.146 3.854 12 C -0.011 4.011 13 C -0.540 4.540 14 H 0.026 0.974 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.959 3.041 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.235 1.235 21 C -0.064 4.064 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.101 4.101 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.128 0.872 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 -22.105 4.299 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.143 4.143 3 C -0.092 4.092 4 H 0.080 0.920 5 C -0.218 4.218 6 C -0.078 4.078 7 H 0.141 0.859 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.022 3.978 12 C -0.049 4.049 13 C -0.578 4.578 14 H 0.044 0.956 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.213 1.213 20 H -0.158 1.158 21 C -0.065 4.065 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.119 4.119 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.769 -21.297 4.472 28.095 hybrid contribution 0.946 0.418 -0.107 1.040 sum -16.823 -20.879 4.365 27.166 Atomic orbital electron populations 1.22299 0.96124 1.01174 1.02964 1.21497 0.95823 0.93777 1.03226 1.21137 0.96727 0.97260 0.94036 0.92012 1.22072 0.94296 1.01769 1.03702 1.20487 0.92350 0.92670 1.02265 0.85864 1.21081 0.81325 0.91763 0.75708 1.90676 1.64395 1.41243 1.49796 1.46183 1.13650 1.09614 1.67237 1.20984 0.94151 0.83646 0.99042 1.19637 0.91910 0.96012 0.97317 1.21259 0.98577 0.92679 1.45327 0.95565 1.26102 0.98918 0.99993 0.94338 1.70081 1.15537 1.25632 1.47887 0.85533 0.77007 0.79472 0.79847 1.18899 1.21285 1.15791 1.19307 0.93335 0.98457 0.95386 1.21242 0.95125 1.00517 0.97312 1.21384 0.94163 0.99469 0.99486 1.21412 1.00910 0.98135 0.94005 1.21326 0.94087 1.00492 0.99428 1.20939 0.94570 0.97689 0.98702 0.93937 0.91000 0.92712 0.90314 0.90880 0.94124 0.90736 0.90456 0.75070 0.94160 0.94179 0.94457 0.94577 0.92327 0.84251 0.83789 0.84202 0.85371 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 8.37 71.98 0.60 -2.09 16 2 C -0.11 -1.51 5.39 30.59 0.16 -1.35 16 3 C -0.07 -1.37 2.05 -10.79 -0.02 -1.40 16 4 H 0.06 1.39 6.78 -2.39 -0.02 1.37 16 5 C -0.16 -2.93 7.93 71.99 0.57 -2.36 16 6 C -0.06 -1.24 1.97 -12.28 -0.02 -1.27 16 7 H 0.12 2.03 7.86 -2.39 -0.02 2.01 16 8 C 0.51 16.24 6.02 87.65 0.53 16.77 16 9 O -0.58 -23.80 15.03 -3.02 -0.05 -23.84 16 10 N -0.71 -22.33 4.48 -463.05 -2.07 -24.40 16 11 C 0.15 6.02 5.62 86.38 0.49 6.50 16 12 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 13 C -0.54 -31.02 9.66 25.60 0.25 -30.77 16 14 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 15 C 0.00 0.20 5.47 84.66 0.46 0.66 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.96 42.08 27.47 68.60 1.88 43.96 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 21 C -0.06 -1.48 2.29 -19.86 -0.05 -1.53 16 22 C -0.12 -2.40 7.76 22.27 0.17 -2.22 16 23 C -0.13 -2.23 10.04 22.27 0.22 -2.01 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 25 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16 26 C -0.10 -2.56 6.24 22.27 0.14 -2.42 16 27 H 0.04 0.78 6.97 -2.38 -0.02 0.76 16 28 H 0.07 1.21 4.04 -2.39 -0.01 1.20 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.04 0.95 6.68 -2.39 -0.02 0.94 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.11 7.77 -2.39 -0.02 1.10 16 35 H 0.41 10.03 7.44 -92.71 -0.69 9.34 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.55 7.20 -2.38 -0.02 1.54 16 39 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.14 2.06 7.95 -2.91 -0.02 2.04 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.10 2.91 6.92 -2.91 -0.02 2.89 16 Total: -1.00 -72.89 351.23 4.36 -68.53 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.22 Total: 23.71 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 4.08 Total: -28.69 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.78 Total: -83.67 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -72.89 4.36 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.226 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds