Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08994 * 109.47396 * 54.99740 * 3 2 1 5 5 C 1.52997 * 109.46834 * 294.99666 * 3 2 1 6 6 C 1.52996 * 109.47012 * 175.00004 * 3 2 1 7 7 H 1.08999 * 109.47776 * 61.31041 * 6 3 2 8 8 C 1.50699 * 109.47276 * 181.31241 * 6 3 2 9 9 O 1.21284 * 119.99876 * 36.12199 * 8 6 3 10 10 N 1.34775 * 120.00093 * 216.12447 * 8 6 3 11 11 C 1.46499 * 120.00152 * 174.99947 * 10 8 6 12 12 C 1.53002 * 109.47422 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99422 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99283 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00438 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47112 * 89.99865 * 17 15 13 19 19 H 1.48500 * 109.47416 * 210.00298 * 17 15 13 20 20 H 1.48504 * 109.46999 * 330.00228 * 17 15 13 21 21 C 1.50701 * 109.47449 * 301.31113 * 6 3 2 22 22 C 1.38240 * 119.99792 * 299.73009 * 21 6 3 23 23 C 1.38238 * 119.99867 * 179.80298 * 22 21 6 24 24 C 1.38237 * 119.99861 * 0.40203 * 23 22 21 25 25 C 1.38236 * 120.00083 * 359.85165 * 24 23 22 26 26 C 1.38232 * 120.00318 * 119.99739 * 21 6 3 27 27 H 1.09000 * 109.47006 * 300.00247 * 1 2 3 28 28 H 1.08992 * 109.46800 * 60.00209 * 1 2 3 29 29 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47255 * 239.99267 * 2 1 3 31 31 H 1.09001 * 109.46907 * 120.00013 * 2 1 3 32 32 H 1.09000 * 109.47328 * 64.78850 * 5 3 2 33 33 H 1.09000 * 109.47175 * 184.78668 * 5 3 2 34 34 H 1.08994 * 109.47648 * 304.78567 * 5 3 2 35 35 H 0.97002 * 120.00314 * 354.99898 * 10 8 6 36 36 H 1.09004 * 109.47326 * 300.00170 * 11 10 8 37 37 H 1.09004 * 109.47245 * 59.99566 * 11 10 8 38 38 H 1.08995 * 109.46731 * 299.99865 * 12 11 10 39 39 H 1.08997 * 109.46915 * 60.00174 * 12 11 10 40 40 H 0.97002 * 119.99565 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.00189 * 359.97438 * 22 21 6 42 42 H 1.08002 * 119.99922 * 180.22819 * 23 22 21 43 43 H 1.08001 * 120.00032 * 179.82903 * 24 23 22 44 44 H 1.08000 * 119.99584 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99895 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 4.0005 0.9254 -0.7281 8 6 4.0646 2.8656 0.1582 9 8 3.4174 3.7232 0.7208 10 7 5.2307 3.1837 -0.4381 11 6 5.6631 4.5820 -0.5021 12 6 7.0092 4.6670 -1.2244 13 6 7.4537 6.1055 -1.2908 14 1 6.8379 6.8813 -0.8605 15 6 8.6466 6.4309 -1.9009 16 7 9.0347 7.6861 -1.9583 17 14 9.7113 5.0890 -2.6457 18 1 9.3274 4.8834 -4.0654 19 1 11.1388 5.4917 -2.5723 20 1 9.5142 3.8250 -1.8916 21 6 3.9649 0.7421 1.3977 22 6 3.5332 1.2250 2.6189 23 6 3.8968 0.5785 3.7855 24 6 4.6990 -0.5460 3.7313 25 6 5.1350 -1.0259 2.5104 26 6 4.7681 -0.3817 1.3437 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5491 2.2012 -1.3572 33 1 2.0704 3.1252 -1.3448 34 1 1.9983 1.5403 -2.1516 35 1 5.7836 2.4869 -0.8249 36 1 4.9212 5.1673 -1.0455 37 1 5.7679 4.9766 0.5085 38 1 7.7508 4.0819 -0.6806 39 1 6.9048 4.2724 -2.2350 40 1 9.8741 7.9151 -2.3872 41 1 2.9096 2.1057 2.6615 42 1 3.5565 0.9537 4.7394 43 1 4.9853 -1.0495 4.6428 44 1 5.7620 -1.9042 2.4682 45 1 5.1086 -0.7567 0.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -44.919823 kcal Electronic energy + Delta-G solvation = -23036.516019 eV Core-core repulsion = 19824.556761 eV Total energy + Delta-G solvation = -3211.959257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47350 -38.64582 -36.57540 -34.91259 -32.87030 -32.37647 -30.97940 -30.21184 -29.84972 -27.08280 -25.10633 -23.83691 -22.77941 -21.87383 -20.82580 -20.45296 -19.36503 -17.11051 -16.97288 -16.71201 -15.63539 -15.44783 -15.09954 -14.85306 -14.59697 -14.20382 -14.05981 -13.77256 -13.50671 -13.38123 -13.12392 -12.71916 -12.56277 -12.47989 -12.30427 -12.06485 -11.76991 -11.49238 -11.32638 -11.21767 -11.10321 -10.87710 -10.64544 -10.62049 -10.38574 -10.24441 -9.96573 -9.55460 -9.31915 -8.99826 -8.70136 -8.63757 -8.50507 -6.11313 -4.11292 1.21831 1.32460 2.93330 3.24799 3.32604 3.33976 3.52808 3.75208 4.37528 4.53734 4.62194 4.75311 4.85132 4.89407 4.95103 5.06447 5.17344 5.18846 5.21701 5.36856 5.42058 5.45790 5.52319 5.56493 5.61439 5.83939 5.85866 5.92537 5.95947 5.98158 6.01250 6.13297 6.20840 6.29386 6.31114 6.36525 6.43924 6.53351 6.56191 6.77330 6.90459 7.14158 7.23406 7.66695 7.91946 8.43435 8.58101 8.93095 9.48920 11.01798 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003884 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.271880 B = 7206.467238 C = 8031.111607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.069 4.069 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.065 4.065 7 H 0.093 0.907 8 C 0.519 3.481 9 O -0.542 6.542 10 N -0.725 5.725 11 C 0.130 3.870 12 C -0.022 4.022 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.069 4.069 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.113 4.113 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 -21.049 5.944 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.088 4.088 4 H 0.103 0.897 5 C -0.209 4.209 6 C -0.087 4.087 7 H 0.111 0.889 8 C 0.304 3.696 9 O -0.420 6.420 10 N -0.374 5.374 11 C 0.008 3.992 12 C -0.060 4.060 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.069 4.069 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.323 -20.264 6.260 25.046 hybrid contribution 1.112 -0.875 -0.648 1.556 sum -12.211 -21.139 5.612 25.049 Atomic orbital electron populations 1.21797 0.95819 1.01299 1.02001 1.21588 0.95909 0.95920 1.02123 1.21023 0.91488 0.96549 0.99760 0.89741 1.21912 1.01613 1.01028 0.96301 1.20436 0.97900 0.93707 0.96652 0.88896 1.20265 0.81222 0.89737 0.78407 1.90665 1.57204 1.50468 1.43623 1.46365 1.21617 1.11069 1.58382 1.21499 0.97540 0.79047 1.01110 1.19790 0.91926 0.98974 0.95262 1.20921 1.06103 0.91026 1.38032 0.90645 1.25000 0.97424 0.95357 0.95499 1.69906 1.22632 1.16995 1.44149 0.86756 0.79802 0.82673 0.79886 1.20208 1.21249 1.19085 1.19419 0.98079 0.95670 0.93776 1.21180 0.99465 0.99609 0.91778 1.21156 0.98451 0.95882 0.98251 1.21154 0.98282 0.96878 0.97775 1.21087 1.00236 1.00112 0.92510 1.21051 0.97973 0.95523 0.98587 0.92759 0.92480 0.93011 0.92079 0.91659 0.92174 0.92055 0.92806 0.77162 0.92040 0.91997 0.96040 0.96471 0.92555 0.85324 0.86102 0.86281 0.86127 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.07 5.23 -26.73 -0.14 -1.21 16 3 C -0.07 -0.77 1.49 -90.62 -0.14 -0.91 16 4 H 0.08 1.07 7.12 -51.93 -0.37 0.70 16 5 C -0.15 -1.70 8.67 37.16 0.32 -1.38 16 6 C -0.07 -0.79 1.96 -92.93 -0.18 -0.97 16 7 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 8 C 0.52 8.34 5.35 -10.99 -0.06 8.28 16 9 O -0.54 -10.52 15.31 5.55 0.09 -10.43 16 10 N -0.72 -12.08 5.55 -60.29 -0.33 -12.41 16 11 C 0.13 2.68 5.62 -4.04 -0.02 2.66 16 12 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 13 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 17 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 C -0.07 -0.81 3.36 -104.62 -0.35 -1.17 16 22 C -0.10 -1.28 8.81 -39.58 -0.35 -1.62 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.11 -1.17 9.67 -39.59 -0.38 -1.55 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 32 H 0.06 0.60 6.80 -51.93 -0.35 0.25 16 33 H 0.06 0.84 6.84 -51.93 -0.36 0.49 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 5.59 8.46 -40.82 -0.35 5.24 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 41 H 0.13 1.74 7.06 -52.49 -0.37 1.37 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -31.95 362.16 -8.85 -40.80 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.49 Total: 4.22 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.68 Total: -17.42 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.44 Total: -39.08 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.95 -8.85 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.119 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds