Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08994 * 109.47396 * 54.99740 * 3 2 1 5 5 C 1.52997 * 109.46834 * 294.99666 * 3 2 1 6 6 C 1.52996 * 109.47012 * 175.00004 * 3 2 1 7 7 H 1.08999 * 109.47776 * 61.31041 * 6 3 2 8 8 C 1.50699 * 109.47276 * 181.31241 * 6 3 2 9 9 O 1.21284 * 119.99876 * 36.12199 * 8 6 3 10 10 N 1.34775 * 120.00093 * 216.12447 * 8 6 3 11 11 C 1.46499 * 120.00152 * 174.99947 * 10 8 6 12 12 C 1.53002 * 109.47422 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46995 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99422 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99283 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00438 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47112 * 89.99865 * 17 15 13 19 19 H 1.48500 * 109.47416 * 210.00298 * 17 15 13 20 20 H 1.48504 * 109.46999 * 330.00228 * 17 15 13 21 21 C 1.50701 * 109.47449 * 301.31113 * 6 3 2 22 22 C 1.38240 * 119.99792 * 299.73009 * 21 6 3 23 23 C 1.38238 * 119.99867 * 179.80298 * 22 21 6 24 24 C 1.38237 * 119.99861 * 0.40203 * 23 22 21 25 25 C 1.38236 * 120.00083 * 359.85165 * 24 23 22 26 26 C 1.38232 * 120.00318 * 119.99739 * 21 6 3 27 27 H 1.09000 * 109.47006 * 300.00247 * 1 2 3 28 28 H 1.08992 * 109.46800 * 60.00209 * 1 2 3 29 29 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47255 * 239.99267 * 2 1 3 31 31 H 1.09001 * 109.46907 * 120.00013 * 2 1 3 32 32 H 1.09000 * 109.47328 * 64.78850 * 5 3 2 33 33 H 1.09000 * 109.47175 * 184.78668 * 5 3 2 34 34 H 1.08994 * 109.47648 * 304.78567 * 5 3 2 35 35 H 0.97002 * 120.00314 * 354.99898 * 10 8 6 36 36 H 1.09004 * 109.47326 * 300.00170 * 11 10 8 37 37 H 1.09004 * 109.47245 * 59.99566 * 11 10 8 38 38 H 1.08995 * 109.46731 * 299.99865 * 12 11 10 39 39 H 1.08997 * 109.46915 * 60.00174 * 12 11 10 40 40 H 0.97002 * 119.99565 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.00189 * 359.97438 * 22 21 6 42 42 H 1.08002 * 119.99922 * 180.22819 * 23 22 21 43 43 H 1.08001 * 120.00032 * 179.82903 * 24 23 22 44 44 H 1.08000 * 119.99584 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99895 * 359.97438 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 4.0005 0.9254 -0.7281 8 6 4.0646 2.8656 0.1582 9 8 3.4174 3.7232 0.7208 10 7 5.2307 3.1837 -0.4381 11 6 5.6631 4.5820 -0.5021 12 6 7.0092 4.6670 -1.2244 13 6 7.4537 6.1055 -1.2908 14 1 6.8379 6.8813 -0.8605 15 6 8.6466 6.4309 -1.9009 16 7 9.0347 7.6861 -1.9583 17 14 9.7113 5.0890 -2.6457 18 1 9.3274 4.8834 -4.0654 19 1 11.1388 5.4917 -2.5723 20 1 9.5142 3.8250 -1.8916 21 6 3.9649 0.7421 1.3977 22 6 3.5332 1.2250 2.6189 23 6 3.8968 0.5785 3.7855 24 6 4.6990 -0.5460 3.7313 25 6 5.1350 -1.0259 2.5104 26 6 4.7681 -0.3817 1.3437 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5491 2.2012 -1.3572 33 1 2.0704 3.1252 -1.3448 34 1 1.9983 1.5403 -2.1516 35 1 5.7836 2.4869 -0.8249 36 1 4.9212 5.1673 -1.0455 37 1 5.7679 4.9766 0.5085 38 1 7.7508 4.0819 -0.6806 39 1 6.9048 4.2724 -2.2350 40 1 9.8741 7.9151 -2.3872 41 1 2.9096 2.1057 2.6615 42 1 3.5565 0.9537 4.7394 43 1 4.9853 -1.0495 4.6428 44 1 5.7620 -1.9042 2.4682 45 1 5.1086 -0.7567 0.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = -63.817997 kcal Electronic energy + Delta-G solvation = -23037.335505 eV Core-core repulsion = 19824.556761 eV Total energy + Delta-G solvation = -3212.778744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55773 -39.69376 -37.53660 -36.52765 -34.80887 -33.35524 -31.93880 -31.75989 -30.71817 -28.17425 -26.69020 -24.86866 -23.58905 -22.92352 -22.52061 -21.58640 -20.38650 -19.01517 -18.11108 -17.84882 -16.79305 -16.61410 -16.29161 -16.12572 -15.79362 -15.62934 -15.19547 -14.97051 -14.61241 -14.52877 -14.20618 -14.15587 -13.65225 -13.41505 -13.36666 -13.10359 -13.04053 -12.88127 -12.52295 -12.22561 -12.16981 -12.13797 -11.88551 -11.77487 -11.68548 -11.54866 -11.48577 -11.39767 -10.81715 -10.79926 -10.05154 -9.79711 -9.57655 -8.31311 -6.38842 0.39963 0.52318 1.38033 1.41092 1.52350 1.65866 2.26108 2.36007 2.89526 3.03688 3.65034 3.68730 3.83196 4.05147 4.10678 4.17052 4.25410 4.32538 4.37019 4.39281 4.42628 4.58061 4.61650 4.68623 4.71380 4.72407 4.76380 4.83360 5.07150 5.08972 5.12829 5.16922 5.17818 5.22211 5.25112 5.38233 5.40984 5.47770 5.53798 5.58895 5.63671 5.64998 5.69755 6.12568 6.20720 6.60864 6.69934 7.25538 7.29060 8.85644 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003884 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.271880 B = 7206.467238 C = 8031.111607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.066 4.066 4 H 0.059 0.941 5 C -0.149 4.149 6 C -0.054 4.054 7 H 0.122 0.878 8 C 0.517 3.483 9 O -0.582 6.582 10 N -0.717 5.717 11 C 0.146 3.854 12 C -0.011 4.011 13 C -0.541 4.541 14 H 0.027 0.973 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.238 1.238 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.113 4.113 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -25.667 4.965 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.085 4.085 4 H 0.077 0.923 5 C -0.206 4.206 6 C -0.075 4.075 7 H 0.140 0.860 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.369 5.369 11 C 0.022 3.978 12 C -0.049 4.049 13 C -0.579 4.579 14 H 0.045 0.955 15 C -0.193 4.193 16 N -0.591 5.591 17 Si 0.782 3.218 18 H -0.187 1.187 19 H -0.212 1.212 20 H -0.161 1.161 21 C -0.081 4.081 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.131 4.131 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.147 0.853 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.412 -24.920 5.287 28.337 hybrid contribution 0.746 0.658 -0.241 1.024 sum -11.665 -24.262 5.045 27.389 Atomic orbital electron populations 1.21801 0.95297 1.02101 1.01741 1.21512 0.96310 0.94041 1.02736 1.20990 0.90974 0.97891 0.98676 0.92290 1.21898 1.02130 0.99472 0.97109 1.20432 0.98330 0.90577 0.98201 0.85958 1.21077 0.80274 0.91317 0.76900 1.90650 1.58207 1.52244 1.45103 1.46144 1.22304 1.09589 1.58819 1.20991 0.96296 0.81395 0.99110 1.19635 0.92891 0.95675 0.96680 1.21252 1.05985 0.92882 1.37770 0.95495 1.26096 0.99049 0.98264 0.95898 1.70080 1.23525 1.19895 1.45558 0.85531 0.77004 0.79769 0.79546 1.18742 1.21184 1.16062 1.19418 0.99141 0.96633 0.92933 1.21145 1.00416 0.99605 0.93221 1.21349 0.98942 0.96520 0.98142 1.21490 0.97340 0.96201 0.99192 1.21480 0.99821 1.00633 0.92022 1.21352 0.96942 0.94640 1.00159 0.93646 0.92208 0.91635 0.90360 0.91960 0.91292 0.95295 0.90835 0.75151 0.93802 0.94445 0.94733 0.94436 0.92292 0.87863 0.85253 0.83941 0.83342 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.67 71.98 0.70 -1.55 16 2 C -0.11 -1.74 5.23 30.60 0.16 -1.57 16 3 C -0.07 -1.43 1.49 -10.80 -0.02 -1.45 16 4 H 0.06 1.57 7.12 -2.39 -0.02 1.56 16 5 C -0.15 -3.22 8.67 71.98 0.62 -2.60 16 6 C -0.05 -1.22 1.96 -12.29 -0.02 -1.25 16 7 H 0.12 2.03 7.86 -2.39 -0.02 2.01 16 8 C 0.52 16.67 5.35 87.66 0.47 17.14 16 9 O -0.58 -23.79 15.31 -3.04 -0.05 -23.84 16 10 N -0.72 -23.28 5.55 -463.05 -2.57 -25.85 16 11 C 0.15 6.15 5.62 86.38 0.49 6.63 16 12 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 13 C -0.54 -31.30 9.66 25.60 0.25 -31.05 16 14 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 15 C 0.00 0.23 5.47 84.66 0.46 0.70 16 16 N -0.95 -59.70 13.96 21.45 0.30 -59.41 16 17 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 21 C -0.08 -1.78 3.36 -19.87 -0.07 -1.85 16 22 C -0.13 -3.16 8.81 22.27 0.20 -2.97 16 23 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 24 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 25 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 26 C -0.11 -1.94 9.67 22.27 0.22 -1.72 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.84 6.67 -2.39 -0.02 0.83 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.06 7.00 -2.39 -0.02 1.04 16 32 H 0.07 1.34 6.80 -2.39 -0.02 1.32 16 33 H 0.03 0.80 6.84 -2.39 -0.02 0.78 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 10.49 8.46 -92.71 -0.78 9.70 16 36 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.03 1.48 7.20 -2.39 -0.02 1.47 16 39 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.10 3.05 7.06 -2.91 -0.02 3.03 16 42 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.15 1.72 7.95 -2.91 -0.02 1.70 16 Total: -1.00 -73.21 362.16 3.93 -69.28 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.12 Total: 23.54 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 4.24 Total: -28.06 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -2.27 Total: -85.25 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -73.21 3.93 -69.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.466 kcal (2) G-P(sol) polarization free energy of solvation -73.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds