Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47257 * 2 1 4 4 H 1.08994 * 109.46725 * 304.99339 * 3 2 1 5 5 C 1.50700 * 109.47081 * 184.99707 * 3 2 1 6 6 H 1.07998 * 120.00415 * 240.00261 * 5 3 2 7 7 C 1.37882 * 120.00050 * 59.99643 * 5 3 2 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00121 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47100 * 120.00244 * 9 7 5 12 12 H 1.48498 * 109.47310 * 240.00342 * 9 7 5 13 13 N 1.46497 * 109.46905 * 64.99681 * 3 2 1 14 14 C 1.34772 * 120.00190 * 274.99667 * 13 3 2 15 15 O 1.21550 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.47846 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.39578 * 120.14062 * 180.02562 * 16 14 13 18 18 C 1.37966 * 119.84976 * 180.02562 * 17 16 14 19 19 C 1.38355 * 120.14503 * 0.27870 * 18 17 16 20 20 C 1.50701 * 119.85310 * 179.69903 * 19 18 17 21 21 C 1.52998 * 109.46956 * 59.99886 * 20 19 18 22 22 C 1.53003 * 109.46868 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.46918 * 299.99873 * 20 19 18 24 24 C 1.38364 * 120.29045 * 359.44583 * 19 18 17 25 25 C 1.37949 * 120.14776 * 0.55105 * 24 19 18 26 26 H 1.09000 * 109.47100 * 59.99910 * 1 2 3 27 27 H 1.08996 * 109.47561 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47186 * 300.00700 * 1 2 3 29 29 H 1.08996 * 109.47390 * 239.99814 * 2 1 3 30 30 H 1.09007 * 109.47099 * 119.99697 * 2 1 3 31 31 H 0.96998 * 120.00317 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99758 * 95.00530 * 13 3 2 33 33 H 1.08000 * 120.07643 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.92372 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.46826 * 60.00102 * 21 20 19 36 36 H 1.09003 * 109.46721 * 179.97438 * 21 20 19 37 37 H 1.08990 * 109.47441 * 300.00180 * 21 20 19 38 38 H 1.08999 * 109.46854 * 60.00546 * 22 20 19 39 39 H 1.09008 * 109.46767 * 179.97438 * 22 20 19 40 40 H 1.08994 * 109.47271 * 300.00082 * 22 20 19 41 41 H 1.08997 * 109.47563 * 60.00267 * 23 20 19 42 42 H 1.09008 * 109.47025 * 179.97438 * 23 20 19 43 43 H 1.08998 * 109.47957 * 299.99583 * 23 20 19 44 44 H 1.08008 * 119.92380 * 180.25782 * 24 19 18 45 45 H 1.07996 * 120.07959 * 179.70727 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5462 -0.1940 11 1 6.4970 -0.5177 -1.4627 12 1 6.3991 1.6165 -2.6100 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3412 2.6320 0.4322 16 6 0.0442 3.3259 2.6300 17 6 -1.2159 3.9136 2.7526 18 6 -1.5743 4.5297 3.9338 19 6 -0.6856 4.5709 4.9935 20 6 -1.0814 5.2515 6.2784 21 6 -2.3199 4.5655 6.8584 22 6 0.0707 5.1579 7.2809 23 6 -1.3964 6.7226 6.0002 24 6 0.5629 3.9853 4.8804 25 6 0.9338 3.3660 3.7048 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0606 -2.9501 32 1 2.2719 2.1232 1.9977 33 1 -1.9085 3.8868 1.9243 34 1 -2.5488 4.9852 4.0299 35 1 -2.0953 3.5174 7.0566 36 1 -2.6059 5.0576 7.7881 37 1 -3.1404 4.6325 6.1441 38 1 0.9527 5.6470 6.8674 39 1 -0.2154 5.6507 8.2102 40 1 0.2956 4.1100 7.4792 41 1 -2.2169 6.7897 5.2859 42 1 -1.6831 7.2149 6.9296 43 1 -0.5141 7.2114 5.5871 44 1 1.2504 4.0173 5.7128 45 1 1.9103 2.9134 3.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -36.422356 kcal Electronic energy + Delta-G solvation = -23008.129667 eV Core-core repulsion = 19796.538888 eV Total energy + Delta-G solvation = -3211.590779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11757 -38.71678 -36.17721 -34.98232 -32.49022 -31.30046 -30.88127 -29.74006 -27.56865 -27.47477 -26.92240 -24.00239 -22.88123 -22.10467 -20.60496 -19.54740 -19.04954 -17.91638 -16.27169 -15.76156 -15.34821 -14.87157 -14.76410 -14.57340 -14.39211 -14.20074 -13.71958 -13.49685 -13.28540 -12.87144 -12.69494 -12.53009 -12.28024 -12.13055 -11.92630 -11.79776 -11.50843 -11.41209 -11.24824 -11.13257 -10.95862 -10.86463 -10.82033 -10.59081 -10.30088 -10.16566 -9.61678 -9.06612 -9.01268 -8.88229 -8.60226 -8.49627 -7.79423 -6.12018 -4.21359 1.07989 1.48010 3.23764 3.31611 3.33978 3.35763 4.09489 4.23076 4.36816 4.41247 4.53709 4.77465 5.00824 5.02840 5.07281 5.19363 5.30413 5.38204 5.42812 5.46452 5.52839 5.58850 5.63908 5.69214 5.76296 5.83586 5.99554 6.03737 6.07142 6.08327 6.41456 6.46359 6.48579 6.56703 6.60254 6.68955 6.98678 7.07187 7.22351 7.38440 7.46455 7.63311 7.75038 7.91380 8.18860 8.67813 8.78566 9.14022 9.46045 10.93401 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.003471 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.426079 B = 8065.803642 C = 8737.994503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.541 3.459 15 O -0.546 6.546 16 C -0.125 4.125 17 C -0.063 4.063 18 C -0.126 4.126 19 C -0.059 4.059 20 C -0.031 4.031 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.087 4.087 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 8.611 17.967 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.128 4.128 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.059 4.059 20 C -0.031 4.031 21 C -0.196 4.196 22 C -0.202 4.202 23 C -0.196 4.196 24 C -0.148 4.148 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.297 8.464 17.076 20.787 hybrid contribution 1.350 -0.095 0.187 1.366 sum -6.948 8.369 17.263 20.404 Atomic orbital electron populations 1.21842 0.98341 0.98045 1.01279 1.21933 0.92645 0.99739 1.02280 1.18817 0.94246 0.89219 0.80920 0.93197 1.21269 0.90691 1.38945 1.06322 0.92057 1.24889 0.98617 0.94804 0.95378 1.69906 1.35028 1.37662 1.09312 0.86402 0.84867 0.77763 0.78122 1.19745 1.20874 1.20878 1.46458 1.14417 1.55504 1.18546 1.18199 0.82958 0.79315 0.86902 1.90728 1.51561 1.60272 1.40065 1.20347 0.95655 1.01667 0.95122 1.21264 0.95292 0.94280 0.97405 1.20897 0.99613 1.00993 0.92940 1.19933 0.94020 0.97125 0.94862 1.19529 0.96110 0.95204 0.92282 1.21891 0.96564 1.00548 1.00560 1.21974 0.97799 1.02099 0.98313 1.21892 1.01893 0.94247 1.01548 1.21078 0.96467 0.99377 0.97894 1.21395 0.99026 0.97563 0.92561 0.93125 0.95845 0.94266 0.88244 0.95043 0.92613 0.77957 0.84868 0.85955 0.92400 0.92420 0.92327 0.92127 0.92456 0.92133 0.92333 0.92420 0.92378 0.85389 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.94 4.97 -55.88 -0.28 -15.21 16 14 C 0.54 11.24 6.34 -12.33 -0.08 11.16 16 15 O -0.55 -13.09 13.48 5.32 0.07 -13.02 16 16 C -0.12 -2.08 5.87 -104.97 -0.62 -2.69 16 17 C -0.06 -0.95 9.60 -39.18 -0.38 -1.33 16 18 C -0.13 -1.52 8.69 -39.64 -0.34 -1.87 16 19 C -0.06 -0.66 4.77 -104.53 -0.50 -1.16 16 20 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 21 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 22 C -0.14 -1.08 7.13 37.16 0.26 -0.82 16 23 C -0.14 -1.08 8.28 37.16 0.31 -0.77 16 24 C -0.13 -1.53 8.96 -39.64 -0.36 -1.88 16 25 C -0.09 -1.21 9.54 -39.19 -0.37 -1.58 16 26 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.39 7.19 6.57 -40.82 -0.27 6.93 16 33 H 0.13 2.04 7.65 -52.49 -0.40 1.64 16 34 H 0.12 1.20 7.08 -52.49 -0.37 0.83 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 38 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 39 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.06 0.45 7.49 -51.93 -0.39 0.06 16 41 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 42 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.13 1.22 5.87 -52.48 -0.31 0.91 16 45 H 0.13 1.61 6.41 -52.49 -0.34 1.28 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -29.99 352.54 -8.70 -38.69 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.13 Total: 7.02 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.27 Total: -14.26 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.35 Total: -39.34 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.99 -8.70 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.263 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds