Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47257 * 2 1 4 4 H 1.08994 * 109.46725 * 304.99339 * 3 2 1 5 5 C 1.50700 * 109.47081 * 184.99707 * 3 2 1 6 6 H 1.07998 * 120.00415 * 240.00261 * 5 3 2 7 7 C 1.37882 * 120.00050 * 59.99643 * 5 3 2 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00121 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47100 * 120.00244 * 9 7 5 12 12 H 1.48498 * 109.47310 * 240.00342 * 9 7 5 13 13 N 1.46497 * 109.46905 * 64.99681 * 3 2 1 14 14 C 1.34772 * 120.00190 * 274.99667 * 13 3 2 15 15 O 1.21550 * 119.99927 * 0.02562 * 14 13 3 16 16 C 1.47846 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.39578 * 120.14062 * 180.02562 * 16 14 13 18 18 C 1.37966 * 119.84976 * 180.02562 * 17 16 14 19 19 C 1.38355 * 120.14503 * 0.27870 * 18 17 16 20 20 C 1.50701 * 119.85310 * 179.69903 * 19 18 17 21 21 C 1.52998 * 109.46956 * 59.99886 * 20 19 18 22 22 C 1.53003 * 109.46868 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.46918 * 299.99873 * 20 19 18 24 24 C 1.38364 * 120.29045 * 359.44583 * 19 18 17 25 25 C 1.37949 * 120.14776 * 0.55105 * 24 19 18 26 26 H 1.09000 * 109.47100 * 59.99910 * 1 2 3 27 27 H 1.08996 * 109.47561 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47186 * 300.00700 * 1 2 3 29 29 H 1.08996 * 109.47390 * 239.99814 * 2 1 3 30 30 H 1.09007 * 109.47099 * 119.99697 * 2 1 3 31 31 H 0.96998 * 120.00317 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99758 * 95.00530 * 13 3 2 33 33 H 1.08000 * 120.07643 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.92372 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.46826 * 60.00102 * 21 20 19 36 36 H 1.09003 * 109.46721 * 179.97438 * 21 20 19 37 37 H 1.08990 * 109.47441 * 300.00180 * 21 20 19 38 38 H 1.08999 * 109.46854 * 60.00546 * 22 20 19 39 39 H 1.09008 * 109.46767 * 179.97438 * 22 20 19 40 40 H 1.08994 * 109.47271 * 300.00082 * 22 20 19 41 41 H 1.08997 * 109.47563 * 60.00267 * 23 20 19 42 42 H 1.09008 * 109.47025 * 179.97438 * 23 20 19 43 43 H 1.08998 * 109.47957 * 299.99583 * 23 20 19 44 44 H 1.08008 * 119.92380 * 180.25782 * 24 19 18 45 45 H 1.07996 * 120.07959 * 179.70727 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5462 -0.1940 11 1 6.4970 -0.5177 -1.4627 12 1 6.3991 1.6165 -2.6100 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3412 2.6320 0.4322 16 6 0.0442 3.3259 2.6300 17 6 -1.2159 3.9136 2.7526 18 6 -1.5743 4.5297 3.9338 19 6 -0.6856 4.5709 4.9935 20 6 -1.0814 5.2515 6.2784 21 6 -2.3199 4.5655 6.8584 22 6 0.0707 5.1579 7.2809 23 6 -1.3964 6.7226 6.0002 24 6 0.5629 3.9853 4.8804 25 6 0.9338 3.3660 3.7048 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0606 -2.9501 32 1 2.2719 2.1232 1.9977 33 1 -1.9085 3.8868 1.9243 34 1 -2.5488 4.9852 4.0299 35 1 -2.0953 3.5174 7.0566 36 1 -2.6059 5.0576 7.7881 37 1 -3.1404 4.6325 6.1441 38 1 0.9527 5.6470 6.8674 39 1 -0.2154 5.6507 8.2102 40 1 0.2956 4.1100 7.4792 41 1 -2.2169 6.7897 5.2859 42 1 -1.6831 7.2149 6.9296 43 1 -0.5141 7.2114 5.5871 44 1 1.2504 4.0173 5.7128 45 1 1.9103 2.9134 3.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -52.627751 kcal Electronic energy + Delta-G solvation = -23008.832386 eV Core-core repulsion = 19796.538888 eV Total energy + Delta-G solvation = -3212.293498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32853 -40.09818 -37.26163 -36.74118 -34.37959 -33.03063 -32.01806 -30.99380 -28.88003 -28.17001 -28.05176 -25.49723 -24.54650 -23.17843 -22.15780 -21.24901 -20.06811 -19.46832 -17.92541 -17.34560 -16.72685 -16.28472 -16.21521 -15.80926 -15.65128 -15.10998 -14.96144 -14.63043 -14.48694 -14.34559 -14.04035 -13.65172 -13.50339 -13.40728 -13.18237 -12.90122 -12.83429 -12.74621 -12.70180 -12.48397 -12.31240 -12.16832 -12.07545 -11.79132 -11.65525 -11.60753 -11.36559 -11.06082 -10.75880 -10.54389 -9.92171 -9.81447 -9.53207 -8.17302 -6.35008 -0.07184 0.44386 1.43737 1.44651 1.56731 2.00730 2.34622 2.61493 2.94329 3.12319 3.60535 3.77809 3.96172 4.05464 4.15421 4.15954 4.39238 4.43995 4.46638 4.54371 4.56155 4.73003 4.83547 4.84258 4.87414 4.96170 5.03259 5.03378 5.09019 5.10454 5.13347 5.22498 5.27769 5.38037 5.41059 5.45798 5.48788 5.49535 5.55180 5.60044 5.67965 5.76991 5.90552 5.98470 6.14504 6.72435 6.95072 7.31363 7.52702 8.88524 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.003471 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.426079 B = 8065.803642 C = 8737.994503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.588 6.588 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.122 4.122 19 C -0.047 4.047 20 C -0.031 4.031 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.086 4.086 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.157 0.843 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 9.549 21.308 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.348 5.348 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.156 4.156 17 C -0.094 4.094 18 C -0.140 4.140 19 C -0.047 4.047 20 C -0.031 4.031 21 C -0.196 4.196 22 C -0.203 4.203 23 C -0.196 4.196 24 C -0.144 4.144 25 C -0.105 4.105 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.174 0.826 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.663 9.414 20.460 23.790 hybrid contribution 1.065 -0.309 -0.771 1.350 sum -6.598 9.105 19.689 22.674 Atomic orbital electron populations 1.21677 0.97116 0.99169 1.00137 1.21785 0.93653 0.99088 1.01390 1.18413 0.93839 0.89193 0.81112 0.98414 1.21595 0.91240 1.39038 1.06842 0.91039 1.25791 1.03474 0.94285 0.94935 1.70057 1.37070 1.38319 1.09850 0.85296 0.78911 0.77888 0.78231 1.18391 1.20323 1.21003 1.46208 1.15236 1.55655 1.17682 1.18860 0.82024 0.78475 0.87999 1.90694 1.52599 1.61796 1.42016 1.20039 0.97386 1.04165 0.94051 1.21278 0.94641 0.95147 0.98377 1.21112 1.00849 1.00110 0.91903 1.20371 0.93322 0.95414 0.95624 1.19621 0.97042 0.95393 0.91012 1.21902 0.96012 1.00324 1.01337 1.21997 0.97271 1.02459 0.98600 1.21905 1.01638 0.93614 1.02460 1.21402 0.97168 0.98195 0.97652 1.21522 0.98882 0.97636 0.92474 0.95513 0.93406 0.94132 0.90757 0.94020 0.92543 0.76292 0.86285 0.83609 0.92922 0.90709 0.92379 0.92077 0.90952 0.91981 0.92392 0.90693 0.93000 0.82598 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.71 2.24 44.25 0.10 14.81 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -29.55 8.73 25.60 0.22 -29.32 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.91 -52.87 11.29 21.45 0.24 -52.63 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.70 -30.63 4.97 -448.99 -2.23 -32.86 16 14 C 0.54 23.29 6.34 86.79 0.55 23.84 16 15 O -0.59 -29.93 13.48 -3.87 -0.05 -29.98 16 16 C -0.15 -5.16 5.87 -20.09 -0.12 -5.28 16 17 C -0.08 -2.27 9.60 22.53 0.22 -2.06 16 18 C -0.12 -2.74 8.69 22.23 0.19 -2.54 16 19 C -0.05 -0.92 4.77 -19.81 -0.09 -1.01 16 20 C -0.03 -0.42 0.85 -52.93 -0.05 -0.46 16 21 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 22 C -0.15 -1.62 7.13 71.98 0.51 -1.11 16 23 C -0.14 -1.70 8.28 71.98 0.60 -1.11 16 24 C -0.13 -2.63 8.96 22.23 0.20 -2.43 16 25 C -0.09 -2.30 9.54 22.53 0.21 -2.08 16 26 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 29 H 0.07 4.18 5.95 -2.39 -0.01 4.17 16 30 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.40 14.98 6.57 -92.71 -0.61 14.37 16 33 H 0.12 3.84 7.65 -2.91 -0.02 3.82 16 34 H 0.15 2.54 7.08 -2.91 -0.02 2.52 16 35 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.71 7.37 -2.39 -0.02 0.69 16 38 H 0.06 0.68 7.52 -2.39 -0.02 0.67 16 39 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.06 0.68 7.49 -2.39 -0.02 0.66 16 41 H 0.06 0.72 7.38 -2.39 -0.02 0.70 16 42 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 43 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.16 2.37 5.87 -2.91 -0.02 2.36 16 45 H 0.14 3.26 6.41 -2.91 -0.02 3.24 16 Total: -1.00 -67.56 352.54 4.72 -62.84 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.37 Total: 27.98 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.37 Total: -19.72 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.99 Total: -85.49 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.56 4.72 -62.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.211 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds