Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 H 1.09003 * 109.46908 * 54.35540 * 3 2 1 5 5 C 1.50693 * 109.47224 * 174.35714 * 3 2 1 6 6 H 1.08004 * 120.00309 * 119.99858 * 5 3 2 7 7 C 1.37880 * 120.00361 * 299.99855 * 5 3 2 8 8 N 1.31515 * 120.00429 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99647 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47155 * 89.99479 * 9 7 5 11 11 H 1.48501 * 109.46939 * 209.99849 * 9 7 5 12 12 H 1.48502 * 109.47082 * 329.99548 * 9 7 5 13 13 N 1.46905 * 109.47202 * 294.35814 * 3 2 1 14 14 C 1.46891 * 110.99908 * 159.17440 * 13 3 2 15 15 H 1.09000 * 109.47431 * 38.75729 * 14 13 3 16 16 C 1.50702 * 109.47326 * 158.75640 * 14 13 3 17 17 C 1.38265 * 119.94892 * 220.00613 * 16 14 13 18 18 C 1.38145 * 120.05703 * 179.97438 * 17 16 14 19 19 C 1.38735 * 119.94292 * 359.97438 * 18 17 16 20 20 O 1.35902 * 120.05540 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99885 * 359.97438 * 20 19 18 22 22 C 1.38733 * 119.89088 * 359.97060 * 19 18 17 23 23 C 1.38147 * 119.94223 * 0.03206 * 22 19 18 24 24 C 1.52999 * 109.47548 * 278.75457 * 14 13 3 25 25 C 1.52996 * 117.50264 * 242.64555 * 24 14 13 26 26 C 1.53001 * 117.50201 * 174.01639 * 24 14 13 27 27 H 1.09000 * 109.46575 * 185.27262 * 1 2 3 28 28 H 1.08993 * 109.47062 * 305.27234 * 1 2 3 29 29 H 1.09002 * 109.47031 * 65.27977 * 1 2 3 30 30 H 1.09004 * 109.47469 * 239.99941 * 2 1 3 31 31 H 1.09002 * 109.47564 * 120.00076 * 2 1 3 32 32 H 0.96997 * 120.00046 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99438 * 35.22112 * 13 3 2 34 34 H 1.07995 * 119.96850 * 359.71185 * 17 16 14 35 35 H 1.07992 * 120.02722 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.47048 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46963 * 300.00501 * 21 20 19 38 38 H 1.09005 * 109.46790 * 59.99749 * 21 20 19 39 39 H 1.07996 * 120.02894 * 180.02562 * 22 19 18 40 40 H 1.07998 * 119.97261 * 179.97438 * 23 22 19 41 41 H 1.09002 * 115.54621 * 28.35245 * 24 14 13 42 42 H 1.08997 * 117.49959 * 359.97438 * 25 24 14 43 43 H 1.09003 * 117.50144 * 145.02056 * 25 24 14 44 44 H 1.08994 * 117.49818 * 214.98098 * 26 24 14 45 45 H 1.09000 * 117.49883 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 0.8352 5 6 3.5404 1.4448 0.1397 6 1 4.1540 1.8865 -0.6317 7 6 4.1302 0.8831 1.2522 8 7 5.4397 0.8847 1.3739 9 14 3.0691 0.1186 2.5861 10 1 2.8515 -1.3186 2.2824 11 1 3.7526 0.2494 3.8980 12 1 1.7598 0.8173 2.6383 13 7 1.6647 2.0946 -1.2617 14 6 1.6804 3.5569 -1.1235 15 1 2.5249 3.8541 -0.5017 16 6 1.8124 4.1889 -2.4853 17 6 2.6220 5.2966 -2.6566 18 6 2.7451 5.8774 -3.9040 19 6 2.0559 5.3479 -4.9854 20 8 2.1749 5.9177 -6.2134 21 6 3.0265 7.0604 -6.3186 22 6 1.2452 4.2356 -4.8111 23 6 1.1254 3.6586 -3.5617 24 6 0.3774 4.0216 -0.4700 25 6 -0.5366 4.9359 -1.2882 26 6 0.2570 5.5037 -0.1096 27 1 -0.3632 -1.0234 0.0944 28 1 -0.3633 0.5934 0.8389 29 1 -0.3633 0.4298 -0.9335 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8545 0.4892 2.1564 33 1 0.7641 1.7713 -1.5818 34 1 3.1552 5.7107 -1.8137 35 1 3.3771 6.7428 -4.0372 36 1 3.0317 7.4161 -7.3489 37 1 2.6577 7.8499 -5.6638 38 1 4.0395 6.7870 -6.0231 39 1 0.7081 3.8214 -5.6515 40 1 0.4941 2.7930 -3.4254 41 1 -0.0969 3.3014 0.1968 42 1 -0.2094 5.2068 -2.2920 43 1 -1.6125 4.8174 -1.1600 44 1 -0.2968 5.7586 0.7938 45 1 1.1063 6.1477 -0.3378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = 19.375397 kcal Electronic energy + Delta-G solvation = -23625.081701 eV Core-core repulsion = 20415.910494 eV Total energy + Delta-G solvation = -3209.171207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17432 -38.71136 -36.52172 -35.74331 -32.38655 -31.76430 -30.91624 -29.56597 -27.60183 -26.98112 -24.65433 -22.75815 -22.42137 -21.85718 -21.71231 -19.92825 -19.31611 -18.01727 -16.68109 -16.13412 -15.97109 -15.67545 -15.26263 -14.80437 -14.58832 -14.21292 -13.84586 -13.58361 -13.24459 -13.13623 -12.77898 -12.45781 -12.33975 -12.15370 -11.90415 -11.85529 -11.66693 -11.37404 -11.12060 -10.85190 -10.77666 -10.61051 -10.50653 -10.28767 -10.17441 -9.95347 -9.63304 -9.39637 -9.15089 -8.72173 -8.51218 -7.82028 -7.38221 -6.02435 -3.99227 1.61083 1.69365 3.26539 3.34219 3.36727 3.38886 4.01308 4.04212 4.41833 4.88492 4.95294 5.04806 5.07178 5.07739 5.16105 5.17931 5.26240 5.34184 5.37048 5.44232 5.62670 5.67593 5.74641 5.82836 5.83963 5.91041 5.95980 5.99211 6.10334 6.20526 6.32482 6.34949 6.40699 6.48373 6.53926 6.60750 6.69216 6.73712 6.80993 6.99242 7.05796 7.21267 7.52901 7.72595 7.99280 8.26036 8.77448 9.10397 9.60720 11.10985 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.004572 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.217394 B = 6122.897391 C = 6559.697139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.190 3.810 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.662 5.662 14 C 0.162 3.838 15 H 0.099 0.901 16 C -0.078 4.078 17 C -0.077 4.077 18 C -0.207 4.207 19 C 0.111 3.889 20 O -0.323 6.323 21 C 0.029 3.971 22 C -0.155 4.155 23 C -0.058 4.058 24 C -0.174 4.174 25 C -0.183 4.183 26 C -0.177 4.177 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.320 0.680 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.414 10.290 -9.463 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.081 3.919 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.291 5.291 14 C 0.051 3.949 15 H 0.117 0.883 16 C -0.079 4.079 17 C -0.096 4.096 18 C -0.226 4.226 19 C 0.066 3.934 20 O -0.237 6.237 21 C -0.066 4.066 22 C -0.173 4.173 23 C -0.076 4.076 24 C -0.194 4.194 25 C -0.220 4.220 26 C -0.215 4.215 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.695 10.123 -9.785 17.094 hybrid contribution -1.019 -0.229 1.546 1.866 sum -10.714 9.893 -8.238 16.749 Atomic orbital electron populations 1.21915 0.98245 1.00529 1.00707 1.22089 0.92893 1.00413 1.01797 1.19626 0.96841 0.89237 0.86165 0.98014 1.21026 0.89121 1.37471 1.05740 0.90118 1.24947 0.94707 0.95982 0.97727 1.69887 1.08922 1.45902 1.29284 0.86963 0.80781 0.79799 0.81276 1.20651 1.22601 1.19294 1.60638 1.33090 1.02509 1.32867 1.19977 0.95007 0.88798 0.91128 0.88255 1.19765 0.96981 0.95316 0.95871 1.20831 0.97134 0.95237 0.96393 1.21101 1.04711 1.03413 0.93343 1.18966 0.96641 0.94000 0.83776 1.86029 1.65104 1.44235 1.28309 1.22983 0.93772 0.86831 1.03017 1.20359 1.02278 0.96482 0.98221 1.20728 0.97930 0.98043 0.90940 1.23297 0.99616 0.93440 1.03016 1.23103 0.97042 1.04889 0.96924 1.22835 1.02946 0.96692 0.98992 0.93675 0.93668 0.93071 0.91295 0.92877 0.92781 0.86205 0.85966 0.86011 0.88685 0.92923 0.92728 0.85782 0.85544 0.87991 0.88169 0.89762 0.89483 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.63 37.16 0.36 -2.25 16 2 C -0.13 -2.81 5.04 -26.73 -0.13 -2.94 16 3 C 0.19 4.28 1.44 -68.86 -0.10 4.18 16 4 H 0.00 0.06 6.28 -51.93 -0.33 -0.27 16 5 C -0.50 -13.68 8.83 -34.44 -0.30 -13.98 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.73 24.41 -169.99 -4.15 17.58 16 10 H -0.28 -6.74 6.82 56.52 0.39 -6.35 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.66 -12.82 5.55 -102.17 -0.57 -13.39 16 14 C 0.16 2.85 2.38 -68.87 -0.16 2.68 16 15 H 0.10 2.05 7.36 -51.93 -0.38 1.66 16 16 C -0.08 -1.25 3.27 -104.60 -0.34 -1.59 16 17 C -0.08 -1.17 9.65 -39.61 -0.38 -1.55 16 18 C -0.21 -2.84 9.04 -39.43 -0.36 -3.19 16 19 C 0.11 1.56 6.69 -39.21 -0.26 1.30 16 20 O -0.32 -4.18 10.50 -19.43 -0.20 -4.39 16 21 C 0.03 0.26 9.81 101.05 0.99 1.25 16 22 C -0.15 -2.18 9.99 -39.43 -0.39 -2.58 16 23 C -0.06 -0.86 7.94 -39.60 -0.31 -1.17 16 24 C -0.17 -2.65 5.40 -90.62 -0.49 -3.14 16 25 C -0.18 -2.39 9.45 -26.73 -0.25 -2.64 16 26 C -0.18 -2.39 10.13 -26.73 -0.27 -2.66 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.75 6.64 -51.93 -0.34 0.40 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.05 1.20 3.21 -51.93 -0.17 1.04 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.32 5.46 5.59 -39.29 -0.22 5.24 16 34 H 0.12 1.74 8.03 -52.49 -0.42 1.32 16 35 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.13 1.75 7.12 -52.49 -0.37 1.38 16 41 H 0.10 1.64 7.66 -51.93 -0.40 1.24 16 42 H 0.10 1.35 5.66 -51.93 -0.29 1.06 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -30.53 349.62 -8.43 -38.96 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.04 Total: 9.13 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -2.51 Total: -26.44 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.21 Total: -40.11 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.20 Total: -4.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.15 Total: 17.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.53 -8.43 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.338 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds