Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 H 1.09003 * 109.46908 * 54.35540 * 3 2 1 5 5 C 1.50693 * 109.47224 * 174.35714 * 3 2 1 6 6 H 1.08004 * 120.00309 * 119.99858 * 5 3 2 7 7 C 1.37880 * 120.00361 * 299.99855 * 5 3 2 8 8 N 1.31515 * 120.00429 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 119.99647 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47155 * 89.99479 * 9 7 5 11 11 H 1.48501 * 109.46939 * 209.99849 * 9 7 5 12 12 H 1.48502 * 109.47082 * 329.99548 * 9 7 5 13 13 N 1.46905 * 109.47202 * 294.35814 * 3 2 1 14 14 C 1.46891 * 110.99908 * 159.17440 * 13 3 2 15 15 H 1.09000 * 109.47431 * 38.75729 * 14 13 3 16 16 C 1.50702 * 109.47326 * 158.75640 * 14 13 3 17 17 C 1.38265 * 119.94892 * 220.00613 * 16 14 13 18 18 C 1.38145 * 120.05703 * 179.97438 * 17 16 14 19 19 C 1.38735 * 119.94292 * 359.97438 * 18 17 16 20 20 O 1.35902 * 120.05540 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99885 * 359.97438 * 20 19 18 22 22 C 1.38733 * 119.89088 * 359.97060 * 19 18 17 23 23 C 1.38147 * 119.94223 * 0.03206 * 22 19 18 24 24 C 1.52999 * 109.47548 * 278.75457 * 14 13 3 25 25 C 1.52996 * 117.50264 * 242.64555 * 24 14 13 26 26 C 1.53001 * 117.50201 * 174.01639 * 24 14 13 27 27 H 1.09000 * 109.46575 * 185.27262 * 1 2 3 28 28 H 1.08993 * 109.47062 * 305.27234 * 1 2 3 29 29 H 1.09002 * 109.47031 * 65.27977 * 1 2 3 30 30 H 1.09004 * 109.47469 * 239.99941 * 2 1 3 31 31 H 1.09002 * 109.47564 * 120.00076 * 2 1 3 32 32 H 0.96997 * 120.00046 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99438 * 35.22112 * 13 3 2 34 34 H 1.07995 * 119.96850 * 359.71185 * 17 16 14 35 35 H 1.07992 * 120.02722 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.47048 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46963 * 300.00501 * 21 20 19 38 38 H 1.09005 * 109.46790 * 59.99749 * 21 20 19 39 39 H 1.07996 * 120.02894 * 180.02562 * 22 19 18 40 40 H 1.07998 * 119.97261 * 179.97438 * 23 22 19 41 41 H 1.09002 * 115.54621 * 28.35245 * 24 14 13 42 42 H 1.08997 * 117.49959 * 359.97438 * 25 24 14 43 43 H 1.09003 * 117.50144 * 145.02056 * 25 24 14 44 44 H 1.08994 * 117.49818 * 214.98098 * 26 24 14 45 45 H 1.09000 * 117.49883 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 0.8352 5 6 3.5404 1.4448 0.1397 6 1 4.1540 1.8865 -0.6317 7 6 4.1302 0.8831 1.2522 8 7 5.4397 0.8847 1.3739 9 14 3.0691 0.1186 2.5861 10 1 2.8515 -1.3186 2.2824 11 1 3.7526 0.2494 3.8980 12 1 1.7598 0.8173 2.6383 13 7 1.6647 2.0946 -1.2617 14 6 1.6804 3.5569 -1.1235 15 1 2.5249 3.8541 -0.5017 16 6 1.8124 4.1889 -2.4853 17 6 2.6220 5.2966 -2.6566 18 6 2.7451 5.8774 -3.9040 19 6 2.0559 5.3479 -4.9854 20 8 2.1749 5.9177 -6.2134 21 6 3.0265 7.0604 -6.3186 22 6 1.2452 4.2356 -4.8111 23 6 1.1254 3.6586 -3.5617 24 6 0.3774 4.0216 -0.4700 25 6 -0.5366 4.9359 -1.2882 26 6 0.2570 5.5037 -0.1096 27 1 -0.3632 -1.0234 0.0944 28 1 -0.3633 0.5934 0.8389 29 1 -0.3633 0.4298 -0.9335 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8545 0.4892 2.1564 33 1 0.7641 1.7713 -1.5818 34 1 3.1552 5.7107 -1.8137 35 1 3.3771 6.7428 -4.0372 36 1 3.0317 7.4161 -7.3489 37 1 2.6577 7.8499 -5.6638 38 1 4.0395 6.7870 -6.0231 39 1 0.7081 3.8214 -5.6515 40 1 0.4941 2.7930 -3.4254 41 1 -0.0969 3.3014 0.1968 42 1 -0.2094 5.2068 -2.2920 43 1 -1.6125 4.8174 -1.1600 44 1 -0.2968 5.7586 0.7938 45 1 1.1063 6.1477 -0.3378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = 0.572843 kcal Electronic energy + Delta-G solvation = -23625.897041 eV Core-core repulsion = 20415.910494 eV Total energy + Delta-G solvation = -3209.986547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28977 -39.87682 -37.85139 -37.09090 -34.33405 -33.32384 -32.02791 -30.81603 -29.05274 -28.20407 -26.05601 -24.21568 -23.79125 -22.92214 -22.84117 -21.62866 -20.65429 -19.03262 -18.73849 -17.44827 -17.10140 -16.68422 -16.58591 -16.33073 -16.02685 -15.44773 -15.25870 -14.85604 -14.74319 -14.37383 -14.21941 -13.90641 -13.56552 -13.50157 -13.43000 -13.04971 -12.82228 -12.67619 -12.44016 -12.33372 -12.21341 -12.11550 -11.73675 -11.68304 -11.65013 -11.41980 -11.19548 -11.06669 -10.79819 -10.65344 -9.84722 -9.02807 -8.89444 -8.24830 -6.25745 0.48239 0.54291 1.29531 1.34570 1.44547 2.33093 2.44383 2.85455 2.91117 3.08680 3.56895 3.87426 3.92433 3.99892 4.04067 4.15876 4.21146 4.31482 4.35125 4.37644 4.41848 4.45950 4.52360 4.57346 4.72557 4.78428 4.80677 4.82211 4.86606 4.93746 5.04265 5.11435 5.13690 5.15931 5.20535 5.27085 5.32291 5.41092 5.47150 5.52066 5.75250 5.81866 5.89104 6.14770 6.50829 6.54343 6.81239 7.01761 7.38665 8.92753 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.004572 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.217394 B = 6122.897391 C = 6559.697139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.199 3.801 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.029 0.971 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.247 1.247 13 N -0.668 5.668 14 C 0.169 3.831 15 H 0.055 0.945 16 C -0.094 4.094 17 C -0.092 4.092 18 C -0.206 4.206 19 C 0.108 3.892 20 O -0.334 6.334 21 C 0.019 3.981 22 C -0.159 4.159 23 C -0.060 4.060 24 C -0.190 4.190 25 C -0.158 4.158 26 C -0.175 4.175 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.336 0.664 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 10.671 -10.238 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.090 3.910 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.595 5.595 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.171 1.171 13 N -0.299 5.299 14 C 0.058 3.942 15 H 0.073 0.927 16 C -0.095 4.095 17 C -0.111 4.111 18 C -0.224 4.224 19 C 0.063 3.937 20 O -0.248 6.248 21 C -0.075 4.075 22 C -0.177 4.177 23 C -0.079 4.079 24 C -0.210 4.210 25 C -0.195 4.195 26 C -0.213 4.213 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.726 10.521 -10.590 19.616 hybrid contribution 0.029 -0.214 1.622 1.637 sum -12.697 10.307 -8.968 18.651 Atomic orbital electron populations 1.21838 0.94307 1.02350 1.02051 1.21980 0.96394 0.98181 1.00696 1.19350 0.93290 0.90966 0.87425 0.98593 1.21289 0.91828 1.36048 1.04199 0.95243 1.25790 0.95847 0.96777 1.00399 1.70058 1.11145 1.47871 1.30391 0.85878 0.79593 0.79546 0.77512 1.19292 1.23037 1.17074 1.60459 1.34384 1.03752 1.31332 1.19746 0.94833 0.87745 0.91862 0.92707 1.19668 0.98400 0.96064 0.95357 1.20927 0.97400 0.95603 0.97155 1.21291 1.04695 1.03879 0.92583 1.19121 0.96226 0.93976 0.84340 1.86022 1.65847 1.45457 1.27475 1.23299 0.93306 0.85853 1.05066 1.20585 1.02283 0.96486 0.98392 1.20791 0.97970 0.98264 0.90849 1.23066 0.99109 0.94422 1.04387 1.23097 0.97669 1.02358 0.96368 1.22923 1.03166 0.95118 1.00079 0.91444 0.93268 0.91030 0.92009 0.94435 0.92816 0.84340 0.86346 0.83859 0.86127 0.91775 0.92482 0.84054 0.84701 0.88427 0.88478 0.87659 0.87996 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.63 71.98 0.69 -3.73 16 2 C -0.13 -5.45 5.04 30.59 0.15 -5.29 16 3 C 0.20 9.04 1.44 44.17 0.06 9.10 16 4 H 0.00 -0.16 6.28 -2.39 -0.01 -0.17 16 5 C -0.49 -28.62 8.83 25.60 0.23 -28.40 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.47 5.45 84.66 0.46 0.94 16 8 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 9 Si 0.95 45.38 24.41 68.60 1.67 47.06 16 10 H -0.27 -12.16 6.82 99.48 0.68 -11.48 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 13 N -0.67 -26.07 5.55 -477.17 -2.65 -28.72 16 14 C 0.17 6.08 2.38 44.17 0.11 6.19 16 15 H 0.05 2.43 7.36 -2.39 -0.02 2.41 16 16 C -0.09 -3.02 3.27 -19.85 -0.06 -3.08 16 17 C -0.09 -2.83 9.65 22.25 0.21 -2.61 16 18 C -0.21 -5.47 9.04 22.37 0.20 -5.27 16 19 C 0.11 2.90 6.69 22.51 0.15 3.05 16 20 O -0.33 -7.97 10.50 -92.44 -0.97 -8.94 16 21 C 0.02 0.29 9.81 113.37 1.11 1.41 16 22 C -0.16 -4.25 9.99 22.37 0.22 -4.02 16 23 C -0.06 -1.73 7.94 22.26 0.18 -1.55 16 24 C -0.19 -5.63 5.40 -10.79 -0.06 -5.69 16 25 C -0.16 -3.78 9.45 30.60 0.29 -3.49 16 26 C -0.18 -4.51 10.13 30.60 0.31 -4.20 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.83 6.64 -2.39 -0.02 1.82 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.04 1.63 3.21 -2.39 -0.01 1.62 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.34 11.06 5.59 -89.70 -0.50 10.56 16 34 H 0.12 3.59 8.03 -2.91 -0.02 3.56 16 35 H 0.14 3.06 6.30 -2.91 -0.02 3.04 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 38 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.14 3.53 7.12 -2.91 -0.02 3.51 16 41 H 0.10 2.98 7.66 -2.39 -0.02 2.97 16 42 H 0.10 2.43 5.66 -2.39 -0.01 2.41 16 43 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 Total: -1.00 -69.29 349.62 3.01 -66.28 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.39 Total: 31.54 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 4.26 Total: -46.65 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -2.35 Total: -89.28 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.97 Total: -8.94 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.06 kcal Total: -69.29 3.01 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.850 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds