Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.09006 * 109.47172 * 179.03979 * 3 2 1 5 5 C 1.50697 * 109.47170 * 299.04031 * 3 2 1 6 6 H 1.08002 * 119.99909 * 120.00193 * 5 3 2 7 7 C 1.37877 * 120.00054 * 299.99696 * 5 3 2 8 8 N 1.31517 * 120.00104 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00046 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47309 * 89.99508 * 9 7 5 11 11 H 1.48499 * 109.47244 * 209.99897 * 9 7 5 12 12 H 1.48507 * 109.46694 * 329.99584 * 9 7 5 13 13 N 1.46899 * 109.47249 * 59.04256 * 3 2 1 14 14 C 1.46900 * 111.00296 * 85.40950 * 13 3 2 15 15 H 1.09002 * 109.46983 * 327.14489 * 14 13 3 16 16 C 1.50705 * 109.46963 * 207.14877 * 14 13 3 17 17 C 1.38261 * 119.94237 * 140.00279 * 16 14 13 18 18 C 1.38139 * 120.05705 * 179.70122 * 17 16 14 19 19 C 1.38740 * 119.94346 * 0.27483 * 18 17 16 20 20 O 1.35901 * 120.05723 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99934 * 179.97438 * 20 19 18 22 22 C 1.38732 * 119.88639 * 359.97438 * 19 18 17 23 23 C 1.38144 * 119.94098 * 0.02562 * 22 19 18 24 24 C 1.52997 * 109.47168 * 87.14824 * 14 13 3 25 25 C 1.52999 * 117.49699 * 248.74990 * 24 14 13 26 26 C 1.53001 * 117.50059 * 180.08888 * 24 14 13 27 27 H 1.09008 * 109.46774 * 176.22553 * 1 2 3 28 28 H 1.08995 * 109.47104 * 296.22226 * 1 2 3 29 29 H 1.08997 * 109.47492 * 56.22858 * 1 2 3 30 30 H 1.08997 * 109.47214 * 239.99938 * 2 1 3 31 31 H 1.09002 * 109.47496 * 119.99839 * 2 1 3 32 32 H 0.97000 * 120.00007 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00155 * 209.36497 * 13 3 2 34 34 H 1.08006 * 119.97336 * 359.97348 * 17 16 14 35 35 H 1.07999 * 120.03229 * 180.29477 * 18 17 16 36 36 H 1.09000 * 109.47107 * 299.99486 * 21 20 19 37 37 H 1.08994 * 109.47112 * 59.99962 * 21 20 19 38 38 H 1.08995 * 109.46996 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.02821 * 180.02562 * 22 19 18 40 40 H 1.08004 * 119.96634 * 180.02562 * 23 22 19 41 41 H 1.08998 * 115.55280 * 34.41873 * 24 14 13 42 42 H 1.08998 * 117.50420 * 359.97438 * 25 24 14 43 43 H 1.08998 * 117.49818 * 145.02410 * 25 24 14 44 44 H 1.09001 * 117.50065 * 214.98019 * 26 24 14 45 45 H 1.09000 * 117.49622 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4427 0.0172 5 6 1.5571 2.1460 -1.2422 6 1 0.9347 3.0246 -1.1578 7 6 1.9099 1.6681 -2.4864 8 7 1.4890 2.2823 -3.5704 9 14 2.9860 0.1481 -2.6323 10 1 2.1279 -1.0627 -2.6848 11 1 3.7978 0.2336 -3.8728 12 1 3.8878 0.0652 -1.4553 13 7 1.5314 2.1417 1.1877 14 6 2.4022 1.9103 2.3479 15 1 2.8336 0.9112 2.2849 16 6 1.5939 2.0295 3.6143 17 6 1.8157 1.1522 4.6597 18 6 1.0805 1.2632 5.8239 19 6 0.1148 2.2524 5.9414 20 8 -0.6095 2.3640 7.0859 21 6 -1.5861 3.4060 7.1366 22 6 -0.1094 3.1281 4.8891 23 6 0.6286 3.0128 3.7270 24 6 3.5240 2.9505 2.3591 25 6 4.9457 2.4592 2.0794 26 6 4.5447 2.8766 3.4965 27 1 -0.3633 -1.0255 -0.0677 28 1 -0.3633 0.4541 0.9219 29 1 -0.3634 0.5712 -0.8542 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7369 1.9458 -4.4458 33 1 1.4234 3.1287 1.0077 34 1 2.5675 0.3823 4.5677 35 1 1.2574 0.5807 6.6420 36 1 -1.0955 4.3704 7.0053 37 1 -2.3164 3.2585 6.3410 38 1 -2.0915 3.3835 8.1020 39 1 -0.8603 3.8993 4.9783 40 1 0.4546 3.6946 2.9076 41 1 3.2518 3.9396 1.9908 42 1 5.0820 1.3949 1.8879 43 1 5.6089 3.1253 1.5275 44 1 4.9441 3.8170 3.8762 45 1 4.4166 2.0871 4.2371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 15.351225 kcal Electronic energy + Delta-G solvation = -23560.527627 eV Core-core repulsion = 20351.181918 eV Total energy + Delta-G solvation = -3209.345709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11601 -38.62459 -36.69540 -35.67540 -32.58498 -31.48024 -30.85171 -29.75559 -27.61856 -26.54450 -24.48190 -23.18169 -22.48137 -22.12367 -21.51391 -20.01625 -19.19713 -18.09102 -16.64638 -16.14982 -15.75380 -15.56632 -15.45296 -14.96103 -14.30546 -14.19424 -13.75834 -13.44540 -13.39605 -13.11985 -12.78836 -12.61284 -12.50126 -12.15116 -11.95428 -11.53733 -11.43568 -11.28686 -11.19633 -10.88651 -10.66040 -10.58966 -10.49733 -10.26954 -10.09341 -9.98903 -9.67060 -9.30119 -8.94179 -8.80460 -8.57258 -7.89699 -7.46303 -6.09398 -4.07642 1.53191 1.64352 3.27699 3.28582 3.36814 3.38436 3.92469 4.06586 4.39265 4.77741 4.87865 5.00009 5.04177 5.05643 5.12304 5.13017 5.26003 5.33113 5.34787 5.44971 5.55635 5.60556 5.78711 5.80815 5.84583 5.96100 6.10629 6.18659 6.21975 6.24846 6.31032 6.39885 6.46106 6.49195 6.59611 6.76497 6.89671 6.93288 6.98150 7.13906 7.28420 7.46938 7.50050 7.62173 7.93957 8.33081 8.61249 8.95159 9.53639 11.03489 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004510 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.393140 B = 6206.727807 C = 6800.753789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.006 0.994 5 C -0.511 4.511 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.268 1.268 13 N -0.662 5.662 14 C 0.155 3.845 15 H 0.078 0.922 16 C -0.080 4.080 17 C -0.081 4.081 18 C -0.153 4.153 19 C 0.111 3.889 20 O -0.323 6.323 21 C 0.029 3.971 22 C -0.208 4.208 23 C -0.053 4.053 24 C -0.166 4.166 25 C -0.176 4.176 26 C -0.178 4.178 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.339 0.661 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 0.986 18.621 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.023 0.977 5 C -0.549 4.549 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.193 1.193 13 N -0.292 5.292 14 C 0.044 3.956 15 H 0.096 0.904 16 C -0.081 4.081 17 C -0.100 4.100 18 C -0.172 4.172 19 C 0.067 3.933 20 O -0.237 6.237 21 C -0.066 4.066 22 C -0.226 4.226 23 C -0.072 4.072 24 C -0.186 4.186 25 C -0.213 4.213 26 C -0.216 4.216 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.264 0.373 18.729 18.735 hybrid contribution 1.180 -0.098 -0.658 1.355 sum 0.916 0.275 18.071 18.097 Atomic orbital electron populations 1.21458 0.95591 0.98213 1.02904 1.21762 0.97397 0.98300 0.97623 1.19568 0.93106 0.91048 0.88478 0.97691 1.21001 1.32268 1.13179 0.88428 0.90456 1.24874 0.95500 0.96692 0.95752 1.69887 1.45544 1.40488 0.97794 0.86886 0.80865 0.83889 0.76773 1.20485 1.22683 1.19336 1.60649 1.47973 1.16208 1.04394 1.20058 0.89098 0.96964 0.89465 0.90391 1.19756 0.97416 0.95743 0.95167 1.20774 0.98586 0.98411 0.92214 1.20267 0.97981 0.99661 0.99295 1.18970 0.92946 0.95798 0.85624 1.86022 1.49692 1.52760 1.35265 1.22988 0.90682 0.89821 1.03117 1.21197 1.04402 1.02139 0.94911 1.20751 0.93441 0.97129 0.95856 1.23180 0.91359 1.01038 1.03037 1.22971 0.98051 1.01667 0.98567 1.22871 1.04319 1.02744 0.91689 0.96258 0.92632 0.91460 0.94175 0.95256 0.92670 0.84135 0.86004 0.85846 0.92838 0.92700 0.88665 0.85971 0.85586 0.87818 0.89055 0.89082 0.89431 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 2 C -0.11 -2.47 5.27 -26.73 -0.14 -2.61 16 3 C 0.19 4.19 1.70 -68.87 -0.12 4.08 16 4 H 0.01 0.13 6.78 -51.93 -0.35 -0.22 16 5 C -0.51 -13.57 7.89 -34.44 -0.27 -13.85 16 6 H 0.08 2.23 7.86 -52.49 -0.41 1.82 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.89 21.82 24.38 -169.99 -4.14 17.68 16 10 H -0.28 -6.77 6.86 56.52 0.39 -6.38 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 13 N -0.66 -12.53 4.73 -102.17 -0.48 -13.02 16 14 C 0.16 2.49 2.21 -68.86 -0.15 2.34 16 15 H 0.08 1.32 6.77 -51.93 -0.35 0.97 16 16 C -0.08 -1.18 4.61 -104.60 -0.48 -1.66 16 17 C -0.08 -1.10 9.20 -39.61 -0.36 -1.46 16 18 C -0.15 -2.01 9.99 -39.43 -0.39 -2.41 16 19 C 0.11 1.49 6.69 -39.21 -0.26 1.23 16 20 O -0.32 -3.99 10.50 -19.43 -0.20 -4.20 16 21 C 0.03 0.25 9.81 101.05 0.99 1.24 16 22 C -0.21 -2.72 9.04 -39.43 -0.36 -3.08 16 23 C -0.05 -0.76 9.32 -39.61 -0.37 -1.13 16 24 C -0.17 -2.47 5.07 -90.62 -0.46 -2.93 16 25 C -0.18 -2.50 10.18 -26.69 -0.27 -2.77 16 26 C -0.18 -2.26 9.87 -26.69 -0.26 -2.53 16 27 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.05 1.13 7.70 -51.93 -0.40 0.73 16 29 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 30 H 0.04 0.94 3.25 -51.93 -0.17 0.77 16 31 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.34 6.44 7.22 -39.29 -0.28 6.16 16 34 H 0.12 1.45 8.03 -52.48 -0.42 1.03 16 35 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 37 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 40 H 0.13 1.78 7.30 -52.48 -0.38 1.40 16 41 H 0.10 1.57 7.90 -51.93 -0.41 1.16 16 42 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -29.43 353.60 -8.57 -38.00 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.18 Total: 8.13 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.66 Total: -25.85 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.29 Total: -39.08 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.43 -8.57 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.352 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds