Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.09006 * 109.47172 * 179.03979 * 3 2 1 5 5 C 1.50697 * 109.47170 * 299.04031 * 3 2 1 6 6 H 1.08002 * 119.99909 * 120.00193 * 5 3 2 7 7 C 1.37877 * 120.00054 * 299.99696 * 5 3 2 8 8 N 1.31517 * 120.00104 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00046 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47309 * 89.99508 * 9 7 5 11 11 H 1.48499 * 109.47244 * 209.99897 * 9 7 5 12 12 H 1.48507 * 109.46694 * 329.99584 * 9 7 5 13 13 N 1.46899 * 109.47249 * 59.04256 * 3 2 1 14 14 C 1.46900 * 111.00296 * 85.40950 * 13 3 2 15 15 H 1.09002 * 109.46983 * 327.14489 * 14 13 3 16 16 C 1.50705 * 109.46963 * 207.14877 * 14 13 3 17 17 C 1.38261 * 119.94237 * 140.00279 * 16 14 13 18 18 C 1.38139 * 120.05705 * 179.70122 * 17 16 14 19 19 C 1.38740 * 119.94346 * 0.27483 * 18 17 16 20 20 O 1.35901 * 120.05723 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99934 * 179.97438 * 20 19 18 22 22 C 1.38732 * 119.88639 * 359.97438 * 19 18 17 23 23 C 1.38144 * 119.94098 * 0.02562 * 22 19 18 24 24 C 1.52997 * 109.47168 * 87.14824 * 14 13 3 25 25 C 1.52999 * 117.49699 * 248.74990 * 24 14 13 26 26 C 1.53001 * 117.50059 * 180.08888 * 24 14 13 27 27 H 1.09008 * 109.46774 * 176.22553 * 1 2 3 28 28 H 1.08995 * 109.47104 * 296.22226 * 1 2 3 29 29 H 1.08997 * 109.47492 * 56.22858 * 1 2 3 30 30 H 1.08997 * 109.47214 * 239.99938 * 2 1 3 31 31 H 1.09002 * 109.47496 * 119.99839 * 2 1 3 32 32 H 0.97000 * 120.00007 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00155 * 209.36497 * 13 3 2 34 34 H 1.08006 * 119.97336 * 359.97348 * 17 16 14 35 35 H 1.07999 * 120.03229 * 180.29477 * 18 17 16 36 36 H 1.09000 * 109.47107 * 299.99486 * 21 20 19 37 37 H 1.08994 * 109.47112 * 59.99962 * 21 20 19 38 38 H 1.08995 * 109.46996 * 179.97438 * 21 20 19 39 39 H 1.08003 * 120.02821 * 180.02562 * 22 19 18 40 40 H 1.08004 * 119.96634 * 180.02562 * 23 22 19 41 41 H 1.08998 * 115.55280 * 34.41873 * 24 14 13 42 42 H 1.08998 * 117.50420 * 359.97438 * 25 24 14 43 43 H 1.08998 * 117.49818 * 145.02410 * 25 24 14 44 44 H 1.09001 * 117.50065 * 214.98019 * 26 24 14 45 45 H 1.09000 * 117.49622 * 359.97438 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4427 0.0172 5 6 1.5571 2.1460 -1.2422 6 1 0.9347 3.0246 -1.1578 7 6 1.9099 1.6681 -2.4864 8 7 1.4890 2.2823 -3.5704 9 14 2.9860 0.1481 -2.6323 10 1 2.1279 -1.0627 -2.6848 11 1 3.7978 0.2336 -3.8728 12 1 3.8878 0.0652 -1.4553 13 7 1.5314 2.1417 1.1877 14 6 2.4022 1.9103 2.3479 15 1 2.8336 0.9112 2.2849 16 6 1.5939 2.0295 3.6143 17 6 1.8157 1.1522 4.6597 18 6 1.0805 1.2632 5.8239 19 6 0.1148 2.2524 5.9414 20 8 -0.6095 2.3640 7.0859 21 6 -1.5861 3.4060 7.1366 22 6 -0.1094 3.1281 4.8891 23 6 0.6286 3.0128 3.7270 24 6 3.5240 2.9505 2.3591 25 6 4.9457 2.4592 2.0794 26 6 4.5447 2.8766 3.4965 27 1 -0.3633 -1.0255 -0.0677 28 1 -0.3633 0.4541 0.9219 29 1 -0.3634 0.5712 -0.8542 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7369 1.9458 -4.4458 33 1 1.4234 3.1287 1.0077 34 1 2.5675 0.3823 4.5677 35 1 1.2574 0.5807 6.6420 36 1 -1.0955 4.3704 7.0053 37 1 -2.3164 3.2585 6.3410 38 1 -2.0915 3.3835 8.1020 39 1 -0.8603 3.8993 4.9783 40 1 0.4546 3.6946 2.9076 41 1 3.2518 3.9396 1.9908 42 1 5.0820 1.3949 1.8879 43 1 5.6089 3.1253 1.5275 44 1 4.9441 3.8170 3.8762 45 1 4.4166 2.0871 4.2371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -1.392902 kcal Electronic energy + Delta-G solvation = -23561.253706 eV Core-core repulsion = 20351.181918 eV Total energy + Delta-G solvation = -3210.071788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12299 -39.77504 -37.82629 -37.18369 -34.35143 -33.17672 -31.87566 -31.01542 -28.85216 -27.89579 -25.83520 -24.98657 -23.55967 -23.18945 -22.55504 -21.48927 -20.70345 -19.04945 -18.53778 -17.43535 -17.02237 -16.64175 -16.54216 -16.24849 -15.70888 -15.36252 -15.16986 -14.98130 -14.74892 -14.55810 -14.29968 -13.96603 -13.64002 -13.49985 -13.04846 -12.87809 -12.61747 -12.60985 -12.55655 -12.41351 -12.28730 -12.06281 -11.78617 -11.70497 -11.56324 -11.36523 -11.21070 -10.89867 -10.79576 -10.66609 -9.82422 -9.05074 -8.88526 -8.26340 -6.27175 0.51328 0.59213 1.31588 1.35116 1.44434 2.33381 2.46524 2.85841 2.98071 3.10356 3.48107 3.86527 3.99122 4.01454 4.05913 4.15288 4.26752 4.37296 4.40580 4.42889 4.47233 4.52003 4.59977 4.63821 4.72171 4.77398 4.78618 4.79650 4.89853 4.98016 5.04487 5.18909 5.19739 5.25164 5.29412 5.37322 5.40029 5.45882 5.56160 5.66653 5.77951 5.82321 5.92047 6.09760 6.53641 6.57314 6.72320 6.89661 7.38062 8.90016 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.004510 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.393140 B = 6206.727807 C = 6800.753789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.115 4.115 3 C 0.196 3.804 4 H -0.001 1.001 5 C -0.502 4.502 6 H 0.041 0.959 7 C 0.020 3.980 8 N -0.947 5.947 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.302 1.302 12 H -0.250 1.250 13 N -0.662 5.662 14 C 0.163 3.837 15 H 0.073 0.927 16 C -0.092 4.092 17 C -0.081 4.081 18 C -0.158 4.158 19 C 0.107 3.893 20 O -0.335 6.335 21 C 0.020 3.980 22 C -0.210 4.210 23 C -0.066 4.066 24 C -0.184 4.184 25 C -0.185 4.185 26 C -0.152 4.152 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.263 0.737 33 H 0.336 0.664 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -0.247 21.301 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.016 0.984 5 C -0.540 4.540 6 H 0.059 0.941 7 C -0.178 4.178 8 N -0.588 5.588 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.231 1.231 12 H -0.174 1.174 13 N -0.291 5.291 14 C 0.052 3.948 15 H 0.091 0.909 16 C -0.093 4.093 17 C -0.099 4.099 18 C -0.177 4.177 19 C 0.062 3.938 20 O -0.250 6.250 21 C -0.074 4.074 22 C -0.229 4.229 23 C -0.085 4.085 24 C -0.203 4.203 25 C -0.222 4.222 26 C -0.190 4.190 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.316 -0.859 21.449 21.469 hybrid contribution 0.899 0.396 -1.375 1.690 sum 1.215 -0.463 20.075 20.117 Atomic orbital electron populations 1.21344 0.95192 0.99079 1.01661 1.21749 0.97749 0.97526 0.98244 1.19338 0.92427 0.91586 0.88027 0.98384 1.21241 1.30548 1.11925 0.90286 0.94068 1.25617 0.97037 0.99615 0.95492 1.70028 1.47786 1.42587 0.98386 0.85988 0.79535 0.80608 0.77091 1.19688 1.23057 1.17405 1.60593 1.48847 1.15698 1.03982 1.19982 0.89178 0.96908 0.88713 0.90885 1.19651 0.97938 0.96766 0.94982 1.20927 0.98887 0.98285 0.91837 1.20517 0.97675 0.99841 0.99628 1.19155 0.93020 0.95687 0.85959 1.86013 1.50215 1.54036 1.34703 1.23278 0.90166 0.89271 1.04727 1.21356 1.04510 1.02599 0.94402 1.20788 0.94043 0.97336 0.96312 1.23071 0.91508 1.00335 1.05423 1.23031 0.97478 1.01578 1.00120 1.22915 1.01627 1.03521 0.90901 0.94025 0.92057 0.94731 0.95263 0.92694 0.92770 0.84576 0.84377 0.84199 0.91994 0.92355 0.86242 0.84280 0.86309 0.88784 0.89294 0.88954 0.88067 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 9.52 71.98 0.69 -4.07 16 2 C -0.11 -4.83 5.27 30.59 0.16 -4.67 16 3 C 0.20 8.72 1.70 44.17 0.08 8.79 16 4 H 0.00 -0.06 6.78 -2.38 -0.02 -0.08 16 5 C -0.50 -27.35 7.89 25.60 0.20 -27.15 16 6 H 0.04 2.49 7.86 -2.91 -0.02 2.47 16 7 C 0.02 1.13 5.45 84.65 0.46 1.59 16 8 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 9 Si 0.94 44.91 24.38 68.60 1.67 46.58 16 10 H -0.27 -12.53 6.86 99.48 0.68 -11.85 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 13 N -0.66 -24.95 4.73 -477.15 -2.26 -27.21 16 14 C 0.16 5.02 2.21 44.17 0.10 5.12 16 15 H 0.07 2.33 6.77 -2.39 -0.02 2.31 16 16 C -0.09 -2.58 4.61 -19.85 -0.09 -2.67 16 17 C -0.08 -1.98 9.20 22.25 0.20 -1.78 16 18 C -0.16 -3.75 9.99 22.37 0.22 -3.53 16 19 C 0.11 2.63 6.69 22.51 0.15 2.78 16 20 O -0.34 -7.49 10.50 -92.43 -0.97 -8.46 16 21 C 0.02 0.29 9.81 113.37 1.11 1.40 16 22 C -0.21 -5.16 9.04 22.37 0.20 -4.96 16 23 C -0.07 -1.84 9.32 22.25 0.21 -1.63 16 24 C -0.18 -5.26 5.07 -10.79 -0.05 -5.32 16 25 C -0.19 -4.99 10.18 30.62 0.31 -4.68 16 26 C -0.15 -3.50 9.87 30.62 0.30 -3.20 16 27 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 2.42 7.70 -2.39 -0.02 2.40 16 29 H 0.03 1.62 7.12 -2.39 -0.02 1.60 16 30 H 0.03 1.30 3.25 -2.39 -0.01 1.29 16 31 H 0.05 2.04 7.50 -2.39 -0.02 2.02 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.34 13.09 7.22 -89.69 -0.65 12.44 16 34 H 0.14 2.85 8.03 -2.91 -0.02 2.83 16 35 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 37 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.14 2.81 6.30 -2.91 -0.02 2.79 16 40 H 0.12 3.38 7.30 -2.91 -0.02 3.36 16 41 H 0.09 2.86 7.90 -2.39 -0.02 2.84 16 42 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 43 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.10 2.16 7.68 -2.39 -0.02 2.14 16 Total: -1.00 -63.71 353.60 3.24 -60.46 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.25 Total: 30.66 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 4.25 Total: -43.96 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.96 Total: -85.29 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.97 Total: -8.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -63.71 3.24 -60.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.070 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds