Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 H 1.08994 * 109.46867 * 305.55951 * 3 2 1 5 5 C 1.50698 * 109.47084 * 185.55817 * 3 2 1 6 6 H 1.08004 * 119.99888 * 240.00187 * 5 3 2 7 7 C 1.37869 * 120.00074 * 59.99888 * 5 3 2 8 8 N 1.31515 * 120.00226 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46891 * 60.00025 * 9 7 5 11 11 H 1.48499 * 109.47170 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47202 * 300.00424 * 9 7 5 13 13 N 1.46900 * 109.46916 * 65.55746 * 3 2 1 14 14 C 1.46902 * 110.99857 * 205.85068 * 13 3 2 15 15 H 1.08991 * 109.47144 * 326.91122 * 14 13 3 16 16 C 1.50700 * 109.47416 * 206.90652 * 14 13 3 17 17 C 1.38268 * 119.94414 * 319.73645 * 16 14 13 18 18 C 1.38145 * 120.05417 * 179.72350 * 17 16 14 19 19 C 1.38733 * 119.94349 * 0.56133 * 18 17 16 20 20 O 1.35900 * 120.05566 * 179.68163 * 19 18 17 21 21 C 1.42896 * 116.99968 * 0.02885 * 20 19 18 22 22 C 1.38724 * 119.88819 * 359.70880 * 19 18 17 23 23 C 1.38146 * 119.94695 * 359.97438 * 22 19 18 24 24 C 1.53004 * 109.46894 * 86.91397 * 14 13 3 25 25 C 1.53005 * 117.49858 * 185.94507 * 24 14 13 26 26 C 1.53007 * 60.02960 * 252.51738 * 25 24 14 27 27 H 1.09000 * 109.47237 * 301.18952 * 1 2 3 28 28 H 1.09009 * 109.46748 * 61.18384 * 1 2 3 29 29 H 1.08996 * 109.47428 * 181.18790 * 1 2 3 30 30 H 1.08997 * 109.47501 * 239.99933 * 2 1 3 31 31 H 1.08998 * 109.46806 * 119.99524 * 2 1 3 32 32 H 0.97003 * 120.00577 * 179.97438 * 8 7 5 33 33 H 1.00904 * 111.00412 * 329.80870 * 13 3 2 34 34 H 1.08001 * 119.97378 * 359.96545 * 17 16 14 35 35 H 1.08003 * 120.02607 * 180.24960 * 18 17 16 36 36 H 1.09001 * 109.47113 * 299.99547 * 21 20 19 37 37 H 1.09001 * 109.47894 * 59.99445 * 21 20 19 38 38 H 1.09001 * 109.47323 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.02958 * 179.97438 * 22 19 18 40 40 H 1.08001 * 119.97700 * 179.97438 * 23 22 19 41 41 H 1.09001 * 115.55912 * 331.62805 * 24 14 13 42 42 H 1.08997 * 117.49811 * 145.01809 * 25 24 14 43 43 H 1.08999 * 117.49693 * 0.02562 * 25 24 14 44 44 H 1.08999 * 117.50073 * 107.47550 * 26 25 24 45 45 H 1.08994 * 117.49617 * 252.47525 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1532 1.8867 0.6344 7 6 4.1319 0.8824 -1.2490 8 7 3.3862 0.3445 -2.1893 9 14 5.9921 0.8857 -1.4199 10 1 6.5951 0.1481 -0.2808 11 1 6.3732 0.2264 -2.6947 12 1 6.4867 2.2860 -1.4202 13 7 1.6630 2.0952 1.2609 14 6 1.5630 3.5509 1.0908 15 1 2.2945 3.8816 0.3536 16 6 1.8347 4.2305 2.4081 17 6 1.3291 3.6948 3.5783 18 6 1.5816 4.3128 4.7877 19 6 2.3333 5.4782 4.8263 20 8 2.5776 6.0915 6.0142 21 6 2.0302 5.4808 7.1843 22 6 2.8347 6.0166 3.6503 23 6 2.5850 5.3913 2.4440 24 6 0.1559 3.9128 0.6111 25 6 -0.1102 5.3731 0.2399 26 6 -0.6988 4.7922 1.5272 27 1 -0.3634 0.5322 0.8791 28 1 -0.3633 0.4954 -0.9005 29 1 -0.3634 -1.0274 0.0213 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8021 -0.0508 -2.9714 33 1 0.8018 1.7133 1.6223 34 1 0.7396 2.7905 3.5471 35 1 1.1898 3.8918 5.7019 36 1 0.9447 5.4350 7.0962 37 1 2.4291 4.4717 7.2882 38 1 2.2993 6.0696 8.0613 39 1 3.4199 6.9240 3.6776 40 1 2.9748 5.8103 1.5281 41 1 -0.3550 3.1448 0.0303 42 1 -0.7962 5.5657 -0.5849 43 1 0.7173 6.0758 0.3371 44 1 -0.2583 5.1125 2.4714 45 1 -1.7720 4.6031 1.5493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = 11.169051 kcal Electronic energy + Delta-G solvation = -23575.726742 eV Core-core repulsion = 20366.199681 eV Total energy + Delta-G solvation = -3209.527061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13382 -38.62424 -36.40971 -35.50898 -32.40963 -31.33610 -30.79673 -29.51042 -27.46997 -26.48400 -24.60214 -22.82975 -22.32592 -21.96843 -21.53781 -19.55747 -19.35535 -17.98632 -16.22204 -16.03624 -15.83837 -15.64033 -15.12360 -14.77571 -14.27600 -14.21098 -13.86708 -13.45308 -13.15033 -12.98718 -12.61945 -12.41580 -12.14372 -11.96795 -11.83249 -11.57106 -11.32398 -11.09449 -10.98758 -10.77288 -10.70695 -10.63612 -10.50924 -10.17119 -9.91905 -9.73608 -9.64547 -9.47846 -9.05863 -8.70216 -8.31989 -7.77133 -7.22274 -5.93923 -3.97632 1.63085 1.73784 3.35654 3.36539 3.40450 3.44605 4.05011 4.10051 4.47878 4.93029 5.03009 5.07901 5.08434 5.13895 5.19852 5.24968 5.35078 5.37287 5.40699 5.57326 5.68514 5.73127 5.88590 5.89959 6.07773 6.11648 6.15734 6.19407 6.25841 6.35618 6.39197 6.42205 6.49083 6.58673 6.72918 6.84530 7.00299 7.07622 7.11739 7.18468 7.51483 7.56191 7.79889 7.95462 8.32204 8.41920 8.77711 9.10660 9.67398 11.11307 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.004870 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.763775 B = 5748.349473 C = 6527.232637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.162 3.838 15 H 0.093 0.907 16 C -0.077 4.077 17 C -0.055 4.055 18 C -0.211 4.211 19 C 0.109 3.891 20 O -0.323 6.323 21 C 0.030 3.970 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.169 4.169 25 C -0.178 4.178 26 C -0.184 4.184 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.318 0.682 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.165 8.959 11.810 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.304 5.304 14 C 0.051 3.949 15 H 0.111 0.889 16 C -0.077 4.077 17 C -0.073 4.073 18 C -0.229 4.229 19 C 0.065 3.935 20 O -0.237 6.237 21 C -0.066 4.066 22 C -0.171 4.171 23 C -0.099 4.099 24 C -0.189 4.189 25 C -0.216 4.216 26 C -0.221 4.221 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.374 9.024 11.900 16.238 hybrid contribution -0.006 -0.268 -0.556 0.617 sum -6.379 8.757 11.344 15.686 Atomic orbital electron populations 1.21893 0.99691 0.99512 0.99644 1.21778 0.91133 1.00492 1.03068 1.19163 0.95364 0.89847 0.84358 0.97697 1.21181 0.91285 1.36402 1.04178 0.92123 1.24929 0.97926 0.95685 0.95871 1.69857 1.34698 1.39573 1.09565 0.86642 0.86007 0.78152 0.77061 1.20371 1.21526 1.20435 1.60814 1.36250 1.00680 1.32617 1.19964 0.92735 0.89972 0.92276 0.88902 1.19841 0.97488 0.94755 0.95660 1.20713 0.97561 0.98141 0.90922 1.21164 1.04993 0.97616 0.99153 1.18948 0.96632 0.92593 0.85376 1.86022 1.72978 1.51254 1.13494 1.22972 0.98478 0.98948 0.86158 1.20289 1.04600 1.02210 0.90030 1.20861 0.97220 0.94947 0.96921 1.23310 0.98556 0.93901 1.03162 1.22840 1.03341 0.96865 0.98509 1.23101 0.98564 1.05080 0.95325 0.94614 0.93905 0.94484 0.88236 0.94129 0.93096 0.86329 0.85891 0.86108 0.92928 0.92775 0.88734 0.85838 0.85656 0.87890 0.89496 0.88962 0.88293 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.77 37.16 0.36 -2.45 16 2 C -0.13 -2.90 5.36 -26.73 -0.14 -3.04 16 3 C 0.22 5.26 1.83 -68.86 -0.13 5.13 16 4 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 5 C -0.49 -13.33 8.55 -34.44 -0.29 -13.62 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.20 11.29 55.43 0.63 -24.58 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.67 -13.60 5.48 -102.17 -0.56 -14.16 16 14 C 0.16 2.91 2.34 -68.86 -0.16 2.75 16 15 H 0.09 1.93 7.51 -51.93 -0.39 1.54 16 16 C -0.08 -1.24 3.28 -104.60 -0.34 -1.59 16 17 C -0.05 -0.83 7.91 -39.60 -0.31 -1.15 16 18 C -0.21 -2.91 9.04 -39.43 -0.36 -3.27 16 19 C 0.11 1.56 6.69 -39.22 -0.26 1.30 16 20 O -0.32 -4.25 10.50 -19.43 -0.20 -4.46 16 21 C 0.03 0.27 9.81 101.05 0.99 1.26 16 22 C -0.15 -2.21 9.99 -39.44 -0.39 -2.61 16 23 C -0.08 -1.24 9.65 -39.61 -0.38 -1.62 16 24 C -0.17 -2.68 5.51 -90.58 -0.50 -3.18 16 25 C -0.18 -2.47 10.13 -26.73 -0.27 -2.75 16 26 C -0.18 -2.50 9.44 -26.69 -0.25 -2.75 16 27 H 0.03 0.60 6.42 -51.93 -0.33 0.27 16 28 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 33 H 0.32 5.89 5.65 -39.29 -0.22 5.67 16 34 H 0.12 1.81 7.31 -52.49 -0.38 1.43 16 35 H 0.12 1.38 6.30 -52.48 -0.33 1.05 16 36 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 37 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.13 1.78 8.03 -52.49 -0.42 1.36 16 41 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 44 H 0.10 1.38 5.65 -51.93 -0.29 1.09 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -28.57 357.86 -9.53 -38.11 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.23 Total: 9.32 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.54 Total: -26.13 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.07 Total: -38.74 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.57 -9.53 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.274 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds